Rw6G023870

ATP-dependent DNA helicase Q-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Forward (+)
46532246 .. 46533546
1301 bp
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UTR
Exon/CDS
Intron
Rw6G023870.1

Sequence Viewer

Length: 534 bp
ATGGGTAATCGGATAAAGGAAGAGGAGAAAATTGAAAGAATAATTCGAAGTCTTTTAAAGCTTCCTGAGAATAAAAGATGCATCAACTGCAATAGTTTGGGCATGTTGGAAATATACAGCTCTTTGTCTGAAGCTGACAAGAAGGAGTTTGAGACTGGCTGGCTGCCAACTTACAGGCTAATATACACCTCGATTATATCATATTTCTTATTTGCATTACCTGTCACCCTAATTATTGACTGGCTGCTGCCAACTTACAGGCTAATAATAAGAGTGTTTGGTAACCACTCTTTCCGCCTCAACCAAAGAGAGGTCATTAATGCTACAATGAGTGGCCATGATGTTTTTGTTTTAATGCCAATTGGAGGGGGTAAGAGCCTGACATATCAGGCAAATATTCCTGCTGCTTACCTAAGTGCCAATATGGAGTGGAGTGAACAACATGAGATTCTTAGAGCACCGAGTTCTGAATATTGTAAATACAAGCTGTTATATGTCACCCCTGAAAAAGTTGCAAAAGTGAGCCTGAGTTAA

Protein Analysis

177

Amino Acids

20.41

Weight (kDa)

8.7

Isoelectric Point (pI)

43.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 295
AcoI YGGCCR 1 cut(s) 334
AcuI CTGAAG 1 cut(s) 150
AfiI CCNNNNNNNGG 2 cut(s) 310, 365
AgsI TTSAA 1 cut(s) 35
AluBI AGCT 4 cut(s) 61, 120, 134, 487
AluI AGCT 4 cut(s) 61, 120, 134, 487
Alw21I GWGCWC 1 cut(s) 460
Alw26I GTCTC 1 cut(s) 146
AoxI GGCC 1 cut(s) 334
ApeKI GCWGC 4 cut(s) 163, 244, 247, 404
AseI ATTAAT 1 cut(s) 318
AsuHPI GGTGA 2 cut(s) 217, 490
AsuII TTCGAA 1 cut(s) 46
BalI TGGCCA 1 cut(s) 336
Bbv12I GWGCWC 1 cut(s) 460
BbvI GCAGC 4 cut(s) 150, 231, 234, 391
BcoDI GTCTC 1 cut(s) 146
BisI GCNGC 4 cut(s) 164, 245, 248, 405
BlsI GCNGC 4 cut(s) 165, 246, 249, 406
BmsI GCATC 2 cut(s) 68, 90
Bpu14I TTCGAA 1 cut(s) 46
Bsc4I CCNNNNNNNGG 2 cut(s) 310, 365
Bse1I ACTGG 2 cut(s) 160, 245
BseLI CCNNNNNNNGG 2 cut(s) 310, 365
BseMII CTCAG 2 cut(s) 57, 518
BseNI ACTGG 2 cut(s) 160, 245
BseRI GAGGAG 1 cut(s) 38
BseXI GCAGC 4 cut(s) 150, 231, 234, 391
BshFI GGCC 1 cut(s) 336
BsiHKAI GWGCWC 1 cut(s) 460
BslI CCNNNNNNNGG 2 cut(s) 310, 365
BsmAI GTCTC 1 cut(s) 146
BsnI GGCC 1 cut(s) 336
Bsp119I TTCGAA 1 cut(s) 46
Bsp1286I GDGCHC 1 cut(s) 460
BspACI CCGC 1 cut(s) 295
BspANI GGCC 1 cut(s) 336
BspCNI CTCAG 2 cut(s) 58, 519
BspT104I TTCGAA 1 cut(s) 46
BsrI ACTGG 2 cut(s) 160, 245
Bst6I CTCTTC 1 cut(s) 15
BstAPI GCANNNNNTGC 1 cut(s) 87
BstBI TTCGAA 1 cut(s) 46
BstC8I GCNNGC 1 cut(s) 161
BstDEI CTNAG 4 cut(s) 66, 413, 452, 527
BstEII GGTNACC 1 cut(s) 281
BstMAI GTCTC 1 cut(s) 146
BstMWI GCNNNNNNNGC 1 cut(s) 87
BstNSI RCATGY 1 cut(s) 106
BstPI GGTNACC 1 cut(s) 281
BstV1I GCAGC 4 cut(s) 150, 231, 234, 391
BsuRI GGCC 1 cut(s) 336
Cac8I GCNNGC 1 cut(s) 161
CviAII CATG 3 cut(s) 103, 338, 443
DdeI CTNAG 4 cut(s) 66, 413, 452, 527
DraI TTTAAA 1 cut(s) 57
EaeI YGGCCR 1 cut(s) 334
Eam1104I CTCTTC 1 cut(s) 15
EarI CTCTTC 1 cut(s) 15
EciI GGCGGA 1 cut(s) 284
Eco57I CTGAAG 1 cut(s) 150
Eco91I GGTNACC 1 cut(s) 281
EcoO65I GGTNACC 1 cut(s) 281
EcoT22I ATGCAT 1 cut(s) 83
FaeI CATG 3 cut(s) 106, 341, 446
FatI CATG 3 cut(s) 102, 337, 442
Fnu4HI GCNGC 4 cut(s) 164, 245, 248, 405
Fsp4HI GCNGC 4 cut(s) 164, 245, 248, 405
GluI GCNGC 4 cut(s) 164, 245, 248, 405
HaeIII GGCC 1 cut(s) 336
Hin1II CATG 3 cut(s) 106, 341, 446
HindIII AAGCTT 1 cut(s) 59
HinfI GANTC 1 cut(s) 448
HphI GGTGA 2 cut(s) 217, 490
Hpy166II GTNNAC 1 cut(s) 437
Hpy188I TCNGA 3 cut(s) 12, 130, 469
Hpy188III TCNNGA 1 cut(s) 65
Hpy8I GTNNAC 1 cut(s) 437
HpyAV CCTTC 1 cut(s) 136
HpyCH4V TGCA 4 cut(s) 81, 90, 215, 515
HpyF10VI GCNNNNNNNGC 1 cut(s) 87
HpyF3I CTNAG 4 cut(s) 66, 413, 452, 527
Hsp92II CATG 3 cut(s) 106, 341, 446
Lsp1109I GCAGC 4 cut(s) 150, 231, 234, 391
LweI GCATC 2 cut(s) 68, 90
MaeIII GTNAC 3 cut(s) 223, 281, 496
MboII GAAGA 1 cut(s) 32
MfeI CAATTG 1 cut(s) 360
MhlI GDGCHC 1 cut(s) 460
MlsI TGGCCA 1 cut(s) 336
MluCI AATT 4 cut(s) 30, 42, 231, 360
MluNI TGGCCA 1 cut(s) 336
MmeI TCCRAC 1 cut(s) 87
MnlI CCTC 5 cut(s) 16, 199, 304, 308, 359
Mox20I TGGCCA 1 cut(s) 336
Mph1103I ATGCAT 1 cut(s) 83
MscI TGGCCA 1 cut(s) 336
MseI TTAA 4 cut(s) 56, 318, 353, 532
Msp20I TGGCCA 1 cut(s) 336
MunI CAATTG 1 cut(s) 360
MwoI GCNNNNNNNGC 1 cut(s) 87
NlaIII CATG 3 cut(s) 106, 341, 446
NmuCI GTSAC 2 cut(s) 223, 496
NsiI ATGCAT 1 cut(s) 83
NspI RCATGY 1 cut(s) 106
NspV TTCGAA 1 cut(s) 46
PfeI GAWTC 1 cut(s) 448
PkrI GCNGC 4 cut(s) 165, 246, 249, 406
PshBI ATTAAT 1 cut(s) 318
PspEI GGTNACC 1 cut(s) 281
SaqAI TTAA 4 cut(s) 56, 318, 353, 532
SatI GCNGC 4 cut(s) 164, 245, 248, 405
SduI GDGCHC 1 cut(s) 460
SetI ASST 8 cut(s) 63, 122, 136, 191, 223, 315, 414, 489
SfaNI GCATC 2 cut(s) 68, 90
SfuI TTCGAA 1 cut(s) 46
Sse9I AATT 4 cut(s) 30, 42, 231, 360
SsiI CCGC 1 cut(s) 295
SspI AATATT 2 cut(s) 397, 473
TaqI TCGA 2 cut(s) 46, 191
TasI AATT 4 cut(s) 30, 42, 231, 360
TfiI GAWTC 1 cut(s) 448
Tru1I TTAA 4 cut(s) 56, 318, 353, 532
Tru9I TTAA 4 cut(s) 56, 318, 353, 532
TseFI GTSAC 2 cut(s) 223, 496
TseI GCWGC 4 cut(s) 163, 244, 247, 404
Tsp45I GTSAC 2 cut(s) 223, 496
VspI ATTAAT 1 cut(s) 318
XceI RCATGY 1 cut(s) 106
Zsp2I ATGCAT 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.