Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004296.1

Orthogroup ID

OG0000962

Physical Location & Seq

Genomic Coordinates Forward (+)

96623 .. 98608

Gene Structure 1986 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004296.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

atgtgtggaattgcccactgggtttcaaacccacaagggttcaaattggggctcactccttcctctccggccaagcctctcagagtttcaaggactcggtctgagttgttccatgggactcacaaggtcccggtgggtgataccccctacatcagagccaagaatgttcagctggtggataaggatccagagaaggctattcctctgttctgggccaccttggcaaatattcctgctgcttacctaggtgccaatatggagtggagtgaacaacaggagattcttagagcactgagttctgaatattgtaaatacaagctgttatatgtcgcccctgaaaaagttgccaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_19 TPR_2 TPR_8

Protein Analysis

117

Amino Acids

13.08

Weight (kDa)

9.33

Isoelectric Point (pI)

42.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10930
fragaria_vesca	FvH4_5g28920 FvH4_5g28920
malus_domestica	MD02G1262900.v1.1 MD07G1056800.v1.1 MD07G1057400.v1.1
prunus_persica	Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1
pyrus_communis	pycom02g22480 pycom02g22490 pycom02g22530 pycom07g04380
rosa_chinensis	RchiOBHm_Chr2g0101731 RchiOBHm_Chr2g0146651 RchiOBHm_Chr3g0471841 RchiOBHm_Chr4g0402091 RchiOBHm_Chr5g0019321 RchiOBHm_Chr7g0221231
rosa_laevigata	RLG00000002168 RLG00000008436
rosa_multiflora	Rmu_co8338979.1_g000001 Rmu_co8389917.1_g000001 Rmu_sc0000212.1_g000013 Rmu_sc0000324.1_g000016 Rmu_sc0000518.1_g000001 Rmu_sc0000808.1_g000043 Rmu_sc0002206.1_g000018 Rmu_sc0002551.1_g000024 Rmu_sc0004296.1_g000023 Rmu_sc0009806.1_g000017 Rmu_sc0032411.1_g000001 Rmu_ssc0000291.1_g000025
rosa_roxburghii	Rroxscaffold_176G00431210 Rroxscaffold_1G00026280 Rroxscaffold_3G00238540 Rroxscaffold_4G00313160 Rroxscaffold_4G00330040 Rroxscaffold_5G00342230 Rroxscaffold_5G00352050
rosa_rugosa	Rorug07G0201600 Rorug07G0253300
rosa_samantha	Rh1BG131100 Rh1CG101400 Rh2BG215600 Rh2CG271000 Rh4DG065200 Rh4DG134600 Rh5AG275200 Rh5AG434000 Rh7AG340500 Rh7BG172400 Rh7BG331600 Rh7BG331700 Rh7CG358400 Rh7DG335700 Rh7DG335800 Rh7DG339200 Rh7DG339300
rosa_wichuraiana	Rw6G023870 Rw7G028980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	248
AclWI	GGATC	2 cut(s)	179, 192
AcoI	YGGCCR	1 cut(s)	69
AgsI	TTSAA	3 cut(s)	27, 43, 90
AluBI	AGCT	2 cut(s)	172, 319
AluI	AGCT	2 cut(s)	172, 319
Alw21I	GWGCWC	1 cut(s)	292
AlwI	GGATC	2 cut(s)	179, 192
AoxI	GGCC	2 cut(s)	69, 213
ApeKI	GCWGC	1 cut(s)	236
AspA2I	CCTAGG	1 cut(s)	244
AspS9I	GGNCC	2 cut(s)	127, 213
AsuC2I	CCSGG	1 cut(s)	131
AsuHPI	GGTGA	1 cut(s)	149
AvaII	GGWCC	1 cut(s)	127
AvrII	CCTAGG	1 cut(s)	244
BamHI	GGATCC	1 cut(s)	184
BanI	GGYRCC	1 cut(s)	248
BanII	GRGCYC	1 cut(s)	54
Bbv12I	GWGCWC	1 cut(s)	292
BbvI	GCAGC	1 cut(s)	223
BcnI	CCSGG	1 cut(s)	131
BfaI	CTAG	1 cut(s)	245
BglI	GCCNNNNNGGC	1 cut(s)	221
BisI	GCNGC	1 cut(s)	237
BlnI	CCTAGG	1 cut(s)	244
BlsI	GCNGC	1 cut(s)	238
Bme1390I	CCNGG	1 cut(s)	131
Bme18I	GGWCC	1 cut(s)	127
BmgT120I	GGNCC	2 cut(s)	127, 213
BmiI	GGNNCC	3 cut(s)	129, 186, 250
BmrFI	CCNGG	1 cut(s)	131
BmrI	ACTGGG	1 cut(s)	28
BmuI	ACTGGG	1 cut(s)	28
BpuMI	CCSGG	1 cut(s)	131
BsaBI	GATNNNNATC	1 cut(s)	183
BsaJI	CCNNGG	3 cut(s)	112, 219, 244
Bse1I	ACTGG	1 cut(s)	23
Bse8I	GATNNNNATC	1 cut(s)	183
BseDI	CCNNGG	3 cut(s)	112, 219, 244
BseJI	GATNNNNATC	1 cut(s)	183
BseMII	CTCAG	3 cut(s)	93, 94, 284
BseNI	ACTGG	1 cut(s)	23
BseXI	GCAGC	1 cut(s)	223
BshFI	GGCC	2 cut(s)	71, 215
BshNI	GGYRCC	1 cut(s)	248
BsiHKAI	GWGCWC	1 cut(s)	292
BsiSI	CCGG	2 cut(s)	68, 131
BslFI	GGGAC	2 cut(s)	113, 130
BsmFI	GGGAC	2 cut(s)	113, 130
BsnI	GGCC	2 cut(s)	71, 215
Bsp1286I	GDGCHC	2 cut(s)	54, 292
Bsp143I	GATC	1 cut(s)	184
Bsp19I	CCATGG	1 cut(s)	112
BspANI	GGCC	2 cut(s)	71, 215
BspCNI	CTCAG	3 cut(s)	93, 94, 285
BspLI	GGNNCC	3 cut(s)	129, 186, 250
BspPI	GGATC	2 cut(s)	179, 192
BspT107I	GGYRCC	1 cut(s)	248
BsrI	ACTGG	1 cut(s)	23
BssECI	CCNNGG	3 cut(s)	112, 219, 244
BssMI	GATC	1 cut(s)	184
BssT1I	CCWWGG	3 cut(s)	112, 219, 244
BstDEI	CTNAG	4 cut(s)	80, 102, 284, 293
BstDSI	CCRYGG	1 cut(s)	112
BstKTI	GATC	1 cut(s)	187
BstMBI	GATC	1 cut(s)	184
BstMWI	GCNNNNNNNGC	1 cut(s)	221
BstSCI	CCNGG	1 cut(s)	129
BstV1I	GCAGC	1 cut(s)	223
BstX2I	RGATCY	1 cut(s)	184
BstYI	RGATCY	1 cut(s)	184
BsuRI	GGCC	2 cut(s)	71, 215
BtgI	CCRYGG	1 cut(s)	112
BtsIMutI	CAGTG	2 cut(s)	16, 290
Cfr13I	GGNCC	2 cut(s)	127, 213
CviAII	CATG	1 cut(s)	113
CviJI	RGCY	8 cut(s)	52, 71, 76, 158, 172, 197, 215, 319
CviKI_1	RGCY	8 cut(s)	52, 71, 76, 158, 172, 197, 215, 319
DdeI	CTNAG	4 cut(s)	80, 102, 284, 293
DpnI	GATC	1 cut(s)	186
DpnII	GATC	1 cut(s)	184
EaeI	YGGCCR	1 cut(s)	69
Eco130I	CCWWGG	3 cut(s)	112, 219, 244
Eco24I	GRGCYC	1 cut(s)	54
Eco47I	GGWCC	1 cut(s)	127
EcoO109I	RGGNCCY	1 cut(s)	127
EcoT14I	CCWWGG	3 cut(s)	112, 219, 244
EcoT38I	GRGCYC	1 cut(s)	54
ErhI	CCWWGG	3 cut(s)	112, 219, 244
FaeI	CATG	1 cut(s)	116
FaiI	YATR	4 cut(s)	114, 257, 325, 327
FaqI	GGGAC	2 cut(s)	113, 130
FatI	CATG	1 cut(s)	112
Fnu4HI	GCNGC	1 cut(s)	237
FriOI	GRGCYC	1 cut(s)	54
Fsp4HI	GCNGC	1 cut(s)	237
FspBI	CTAG	1 cut(s)	245
GluI	GCNGC	1 cut(s)	237
HaeIII	GGCC	2 cut(s)	71, 215
HapII	CCGG	2 cut(s)	68, 131
Hin1II	CATG	1 cut(s)	116
HinfI	GANTC	3 cut(s)	94, 118, 280
HpaII	CCGG	2 cut(s)	68, 131
HphI	GGTGA	1 cut(s)	149
Hpy166II	GTNNAC	1 cut(s)	269
Hpy188I	TCNGA	4 cut(s)	83, 103, 155, 301
Hpy188III	TCNNGA	1 cut(s)	188
Hpy8I	GTNNAC	1 cut(s)	269
HpyAV	CCTTC	2 cut(s)	69, 187
HpyF10VI	GCNNNNNNNGC	1 cut(s)	221
HpyF3I	CTNAG	4 cut(s)	80, 102, 284, 293
Hsp92II	CATG	1 cut(s)	116
Kzo9I	GATC	1 cut(s)	184
LpnPI	CCDG	9 cut(s)	4, 81, 144, 158, 196, 201, 246, 260, 348
Lsp1109I	GCAGC	1 cut(s)	223
MaeI	CTAG	1 cut(s)	245
MalI	GATC	1 cut(s)	186
MboI	GATC	1 cut(s)	184
MflI	RGATCY	1 cut(s)	184
MhlI	GDGCHC	2 cut(s)	54, 292
MluCI	AATT	2 cut(s)	9, 44
MlyI	GAGTC	2 cut(s)	88, 112
MnlI	CCTC	3 cut(s)	73, 87, 213
MspA1I	CMGCKG	1 cut(s)	172
MspI	CCGG	2 cut(s)	68, 131
MspR9I	CCNGG	1 cut(s)	131
MwoI	GCNNNNNNNGC	1 cut(s)	221
NciI	CCSGG	1 cut(s)	131
NcoI	CCATGG	1 cut(s)	112
NdeII	GATC	1 cut(s)	184
NlaIII	CATG	1 cut(s)	116
NlaIV	GGNNCC	3 cut(s)	129, 186, 250
PfeI	GAWTC	1 cut(s)	280
PflFI	GACNNNGTC	1 cut(s)	97
PkrI	GCNGC	1 cut(s)	238
PleI	GAGTC	2 cut(s)	88, 112
PpsI	GAGTC	2 cut(s)	88, 112
PpuMI	RGGWCCY	1 cut(s)	127
Psp5II	RGGWCCY	1 cut(s)	127
PspN4I	GGNNCC	3 cut(s)	129, 186, 250
PspPI	GGNCC	2 cut(s)	127, 213
PspPPI	RGGWCCY	1 cut(s)	127
PsuI	RGATCY	1 cut(s)	184
PsyI	GACNNNGTC	1 cut(s)	97
PvuII	CAGCTG	1 cut(s)	172
SatI	GCNGC	1 cut(s)	237
Sau3AI	GATC	1 cut(s)	184
Sau96I	GGNCC	2 cut(s)	127, 213
SchI	GAGTC	2 cut(s)	88, 112
ScrFI	CCNGG	1 cut(s)	131
SduI	GDGCHC	2 cut(s)	54, 292
SetI	ASST	6 cut(s)	129, 174, 221, 246, 250, 321
SinI	GGWCC	1 cut(s)	127
Sse9I	AATT	2 cut(s)	9, 44
SspI	AATATT	2 cut(s)	229, 305
SspMI	CTAG	1 cut(s)	245
StyD4I	CCNGG	1 cut(s)	129
StyI	CCWWGG	3 cut(s)	112, 219, 244
TaqII	GACCGA	1 cut(s)	87
TasI	AATT	2 cut(s)	9, 44
TfiI	GAWTC	1 cut(s)	280
TscAI	CASTG	2 cut(s)	23, 297
TseI	GCWGC	1 cut(s)	236
TspRI	CASTG	2 cut(s)	23, 297
Tth111I	GACNNNGTC	1 cut(s)	97
VpaK11BI	GGWCC	1 cut(s)	127
XmaJI	CCTAGG	1 cut(s)	244
XspI	CTAG	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.