Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0032411.1

Orthogroup ID

OG0000962

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2989

Gene Structure 2989 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0032411.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

atgaatagaggagaaccacagatgagtcgtacccatttgggcaatggtgctgctgctgacaccacgcctttcaaacttggtttattggagcatattacatcactcgacaatttctcaaccccaagtgaagttctcagctcacatttccttttctccttaccgactcaaaaacctccaatggctactagctcaatggcctttccgatccagcatgttcaaagattagagagtgcacaagttcaaaaggcttggcatgccctttccaatcttcagatctcttctaggagctacacaagacctggaaaaactgttcaacttaaaaatgctagcgctgagtttactcatgatgccggaagaactacagttgtaagctcatgtgacattaataaaagtagtggccatatgcaaacacatcaatacatcgatgaaagcaatgccaggttaagtgaagctgcaagctgtctgcgcagtgggtttcggtcaagtaactacaatgttgcagatgcaggaaaaagtcttcgggggcatagtcaggtcacagcatcgctggtcaagaattctcattctcaggtgtctggtggttcatttagtaataatagtgttcataccagccaagcggaagaatgttcgaacaatttggtgagtgagatggatgctggtgatgatgacgacatacttgagctcaataagcagattcagccacttgagagttatctttgttccaactcattggatgaggaaagacggaagtcaaatttttctgcatccacaacaactcccaggcatttccaatatgaaacacctcaagcagctgcattcaggaatgaccctgtgagatttgattcagaggttcatctacataatgaggcaggaggatatgcagagtggaattcatcatcagtttcatcctcttctacggataagtttggtttctcttcttttcctgttgagagagaaccttacatcccaaagtttgttgaagttaactatactgaaggttcaaatgacaagaagtggagggatggttctttcccgtggactaaagaactggaggctaataataagagagtgtttggtaaccactctttccgcctcaaccaaagagaggtcattaatgctacaatgagtggccatgatgttttcgttttaatgccaactggagggggtaagagcttgacatatcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005911 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009266 GO:0009378 GO:0009409 GO:0009506 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0032392 GO:0032508 GO:0032870 GO:0033554 GO:0033993 GO:0034641 GO:0042221 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0055044 GO:0070035 GO:0070417 GO:0070887 GO:0071103 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097305 GO:0097306 GO:0140097 GO:1901360 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko03018 ko03440 ko03460 map03018 map03440 map03460

Pfam Domains

Protein Families

DEAD HRDC Helicase_C RQC RecQ_Zn_bind

Protein Analysis

395

Amino Acids

43.66

Weight (kDa)

6.24

Isoelectric Point (pI)

44.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10930
fragaria_vesca	FvH4_5g28920 FvH4_5g28920
malus_domestica	MD02G1262900.v1.1 MD07G1056800.v1.1 MD07G1057400.v1.1
prunus_persica	Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1
pyrus_communis	pycom02g22480 pycom02g22490 pycom02g22530 pycom07g04380
rosa_chinensis	RchiOBHm_Chr2g0101731 RchiOBHm_Chr2g0146651 RchiOBHm_Chr3g0471841 RchiOBHm_Chr4g0402091 RchiOBHm_Chr5g0019321 RchiOBHm_Chr7g0221231
rosa_laevigata	RLG00000002168 RLG00000008436
rosa_multiflora	Rmu_co8338979.1_g000001 Rmu_co8389917.1_g000001 Rmu_sc0000212.1_g000013 Rmu_sc0000324.1_g000016 Rmu_sc0000518.1_g000001 Rmu_sc0000808.1_g000043 Rmu_sc0002206.1_g000018 Rmu_sc0002551.1_g000024 Rmu_sc0004296.1_g000023 Rmu_sc0009806.1_g000017 Rmu_sc0032411.1_g000001 Rmu_ssc0000291.1_g000025
rosa_roxburghii	Rroxscaffold_176G00431210 Rroxscaffold_1G00026280 Rroxscaffold_3G00238540 Rroxscaffold_4G00313160 Rroxscaffold_4G00330040 Rroxscaffold_5G00342230 Rroxscaffold_5G00352050
rosa_rugosa	Rorug07G0201600 Rorug07G0253300
rosa_samantha	Rh1BG131100 Rh1CG101400 Rh2BG215600 Rh2CG271000 Rh4DG065200 Rh4DG134600 Rh5AG275200 Rh5AG434000 Rh7AG340500 Rh7BG172400 Rh7BG331600 Rh7BG331700 Rh7CG358400 Rh7DG335700 Rh7DG335800 Rh7DG339200 Rh7DG339300
rosa_wichuraiana	Rw6G023870 Rw7G028980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	467
AciI	CCGC	2 cut(s)	617, 1090
AclWI	GGATC	1 cut(s)	199
AcoI	YGGCCR	2 cut(s)	397, 1129
AcsI	RAATTY	3 cut(s)	556, 754, 889
AcuI	CTGAAG	2 cut(s)	254, 1014
AfaI	GTAC	1 cut(s)	31
AfeI	AGCGCT	1 cut(s)	331
AfiI	CCNNNNNNNGG	2 cut(s)	1105, 1160
AgsI	TTSAA	6 cut(s)	73, 218, 242, 314, 980, 1002
AjnI	CCWGG	3 cut(s)	298, 437, 779
AloI	GAACNNNNNNTCC	6 cut(s)	294, 326, 948, 980, 1009, 1041
AluBI	AGCT	9 cut(s)	138, 189, 288, 372, 452, 459, 682, 812, 1173
AluI	AGCT	9 cut(s)	138, 189, 288, 372, 452, 459, 682, 812, 1173
Alw21I	GWGCWC	2 cut(s)	235, 684
Alw44I	GTGCAC	1 cut(s)	231
AlwI	GGATC	1 cut(s)	199
Aor51HI	AGCGCT	1 cut(s)	331
AoxI	GGCC	3 cut(s)	195, 397, 1129
ApaLI	GTGCAC	1 cut(s)	231
ApeKI	GCWGC	5 cut(s)	50, 53, 452, 809, 812
ApoI	RAATTY	3 cut(s)	556, 754, 889
AseI	ATTAAT	2 cut(s)	384, 1113
AspLEI	GCGC	2 cut(s)	332, 468
AsuHPI	GGTGA	2 cut(s)	652, 671
AsuII	TTCGAA	1 cut(s)	629
AsuNHI	GCTAGC	1 cut(s)	326
BaeGI	GKGCMC	1 cut(s)	235
BalI	TGGCCA	2 cut(s)	399, 1131
BanII	GRGCYC	1 cut(s)	684
BbsI	GAAGAC	1 cut(s)	509
Bbv12I	GWGCWC	2 cut(s)	235, 684
BbvI	GCAGC	5 cut(s)	37, 40, 439, 799, 821
BccI	CCATC	2 cut(s)	643, 1016
BciT130I	CCWGG	3 cut(s)	300, 439, 781
BfaI	CTAG	3 cut(s)	186, 282, 327
BfmI	CTRYAG	1 cut(s)	360
BfoI	RGCGCY	1 cut(s)	333
BglII	AGATCT	1 cut(s)	273
BisI	GCNGC	5 cut(s)	51, 54, 453, 810, 813
BlsI	GCNGC	5 cut(s)	52, 55, 454, 811, 814
Bme1390I	CCNGG	3 cut(s)	300, 439, 781
BmrFI	CCNGG	3 cut(s)	300, 439, 781
BmsI	GCATC	5 cut(s)	337, 493, 551, 643, 773
BmtI	GCTAGC	1 cut(s)	330
BoxI	GACNNNNGTC	1 cut(s)	748
BpiI	GAAGAC	1 cut(s)	509
BpmI	CTGGAG	2 cut(s)	1070, 1179
Bpu14I	TTCGAA	1 cut(s)	629
BpuEI	CTTGAG	3 cut(s)	698, 725, 789
Bsa29I	ATCGAT	1 cut(s)	423
BsaJI	CCNNGG	2 cut(s)	779, 1034
BsaXI	ACNNNNNCTCC	4 cut(s)	760, 790, 1009, 1039
Bsc4I	CCNNNNNNNGG	2 cut(s)	1105, 1160
Bse1I	ACTGG	2 cut(s)	1053, 1162
Bse3DI	GCAATG	2 cut(s)	49, 439
BseBI	CCWGG	3 cut(s)	300, 439, 781
BseCI	ATCGAT	1 cut(s)	423
BseDI	CCNNGG	2 cut(s)	779, 1034
BseGI	GGATG	6 cut(s)	658, 739, 764, 905, 963, 1027
BseLI	CCNNNNNNNGG	2 cut(s)	1105, 1160
BseMI	GCAATG	2 cut(s)	49, 439
BseMII	CTCAG	3 cut(s)	148, 324, 581
BseNI	ACTGG	2 cut(s)	1053, 1162
BseRI	GAGGAG	1 cut(s)	24
BseSI	GKGCMC	1 cut(s)	235
BseXI	GCAGC	5 cut(s)	37, 40, 439, 799, 821
BshFI	GGCC	3 cut(s)	197, 399, 1131
BshVI	ATCGAT	1 cut(s)	423
BsiHKAI	GWGCWC	2 cut(s)	235, 684
BsiSI	CCGG	1 cut(s)	351
BslI	CCNNNNNNNGG	2 cut(s)	1105, 1160
BsmI	GAATGC	1 cut(s)	815
BsnI	GGCC	3 cut(s)	197, 399, 1131
Bsp119I	TTCGAA	1 cut(s)	629
Bsp1286I	GDGCHC	2 cut(s)	235, 684
Bsp143I	GATC	2 cut(s)	204, 273
BspACI	CCGC	2 cut(s)	617, 1090
BspANI	GGCC	3 cut(s)	197, 399, 1131
BspCNI	CTCAG	3 cut(s)	147, 325, 580
BspDI	ATCGAT	1 cut(s)	423
BspHI	TCATGA	1 cut(s)	343
BspOI	GCTAGC	1 cut(s)	330
BspPI	GGATC	1 cut(s)	199
BspT104I	TTCGAA	1 cut(s)	629
BsrDI	GCAATG	2 cut(s)	49, 439
BsrI	ACTGG	2 cut(s)	1053, 1162
BssECI	CCNNGG	2 cut(s)	779, 1034
BssMI	GATC	2 cut(s)	204, 273
Bst2UI	CCWGG	3 cut(s)	300, 439, 781
Bst4CI	ACNGT	2 cut(s)	310, 364
Bst6I	CTCTTC	3 cut(s)	283, 916, 940
BstBI	TTCGAA	1 cut(s)	629
BstC8I	GCNNGC	3 cut(s)	255, 328, 457
BstDEI	CTNAG	3 cut(s)	134, 333, 567
BstDSI	CCRYGG	1 cut(s)	1034
BstEII	GGTNACC	1 cut(s)	1076
BstF5I	GGATG	6 cut(s)	658, 739, 764, 905, 963, 1027
BstH2I	RGCGCY	1 cut(s)	333
BstHHI	GCGC	2 cut(s)	332, 468
BstKTI	GATC	2 cut(s)	207, 276
BstMBI	GATC	2 cut(s)	204, 273
BstMWI	GCNNNNNNNGC	4 cut(s)	254, 465, 688, 697
BstNI	CCWGG	3 cut(s)	300, 439, 781
BstNSI	RCATGY	2 cut(s)	215, 257
BstPAI	GACNNNNGTC	1 cut(s)	748
BstPI	GGTNACC	1 cut(s)	1076
BstSCI	CCNGG	3 cut(s)	298, 437, 779
BstSFI	CTRYAG	1 cut(s)	360
BstSLI	GKGCMC	1 cut(s)	235
BstV1I	GCAGC	5 cut(s)	37, 40, 439, 799, 821
BstV2I	GAAGAC	1 cut(s)	509
BstX2I	RGATCY	1 cut(s)	273
BstXI	CCANNNNNNTGG	1 cut(s)	730
BstYI	RGATCY	1 cut(s)	273
Bsu15I	ATCGAT	1 cut(s)	423
BsuRI	GGCC	3 cut(s)	197, 399, 1131
BsuTUI	ATCGAT	1 cut(s)	423
BtgI	CCRYGG	1 cut(s)	1034
BtgZI	GCGATG	1 cut(s)	528
BtsCI	GGATG	6 cut(s)	658, 739, 764, 905, 963, 1027
BtsI	GCAGTG	1 cut(s)	475
BtsIMutI	CAGTG	1 cut(s)	475
Cac8I	GCNNGC	3 cut(s)	255, 328, 457
CciI	TCATGA	1 cut(s)	343
CfoI	GCGC	2 cut(s)	332, 468
ClaI	ATCGAT	1 cut(s)	423
Csp6I	GTAC	1 cut(s)	30
CviAII	CATG	5 cut(s)	212, 254, 344, 375, 1133
CviQI	GTAC	1 cut(s)	30
DdeI	CTNAG	3 cut(s)	134, 333, 567
DpnI	GATC	2 cut(s)	206, 275
DpnII	GATC	2 cut(s)	204, 273
EaeI	YGGCCR	2 cut(s)	397, 1129
Eam1104I	CTCTTC	3 cut(s)	283, 916, 940
EarI	CTCTTC	3 cut(s)	283, 916, 940
EciI	GGCGGA	1 cut(s)	1079
Ecl136II	GAGCTC	1 cut(s)	682
Eco24I	GRGCYC	1 cut(s)	684
Eco47III	AGCGCT	1 cut(s)	331
Eco53kI	GAGCTC	1 cut(s)	682
Eco57I	CTGAAG	2 cut(s)	254, 1014
Eco91I	GGTNACC	1 cut(s)	1076
EcoICRI	GAGCTC	1 cut(s)	682
EcoO65I	GGTNACC	1 cut(s)	1076
EcoRI	GAATTC	2 cut(s)	556, 889
EcoRII	CCWGG	3 cut(s)	298, 437, 779
EcoT38I	GRGCYC	1 cut(s)	684
FaeI	CATG	5 cut(s)	215, 257, 347, 378, 1136
FatI	CATG	5 cut(s)	211, 253, 343, 374, 1132
FauNDI	CATATG	1 cut(s)	402
Fnu4HI	GCNGC	5 cut(s)	51, 54, 453, 810, 813
FokI	GGATG	6 cut(s)	665, 746, 751, 892, 950, 1034
FriOI	GRGCYC	1 cut(s)	684
Fsp4HI	GCNGC	5 cut(s)	51, 54, 453, 810, 813
FspBI	CTAG	3 cut(s)	186, 282, 327
FspI	TGCGCA	1 cut(s)	467
GlaI	GCGC	2 cut(s)	331, 467
GluI	GCNGC	5 cut(s)	51, 54, 453, 810, 813
GsuI	CTGGAG	2 cut(s)	1070, 1179
HaeII	RGCGCY	1 cut(s)	333
HaeIII	GGCC	3 cut(s)	197, 399, 1131
HapII	CCGG	1 cut(s)	351
HhaI	GCGC	2 cut(s)	332, 468
Hin1II	CATG	5 cut(s)	215, 257, 347, 378, 1136
Hin6I	GCGC	2 cut(s)	330, 466
HinP1I	GCGC	2 cut(s)	330, 466
HincII	GTYRAC	1 cut(s)	985
HindII	GTYRAC	1 cut(s)	985
HinfI	GANTC	4 cut(s)	25, 163, 694, 842
HpaI	GTTAAC	1 cut(s)	985
HpaII	CCGG	1 cut(s)	351
HphI	GGTGA	2 cut(s)	652, 671
Hpy166II	GTNNAC	4 cut(s)	233, 339, 985, 1038
Hpy188I	TCNGA	3 cut(s)	204, 273, 847
Hpy188III	TCNNGA	3 cut(s)	344, 553, 820
Hpy8I	GTNNAC	4 cut(s)	233, 339, 985, 1038
HpyAV	CCTTC	1 cut(s)	989
HpyCH4III	ACNGT	2 cut(s)	310, 364
HpyCH4V	TGCA	8 cut(s)	233, 406, 455, 500, 506, 764, 815, 881
HpyF10VI	GCNNNNNNNGC	4 cut(s)	254, 465, 688, 697
HpyF3I	CTNAG	3 cut(s)	134, 333, 567
Hsp92II	CATG	5 cut(s)	215, 257, 347, 378, 1136
HspAI	GCGC	2 cut(s)	330, 466
KspAI	GTTAAC	1 cut(s)	985
Kzo9I	GATC	2 cut(s)	204, 273
LmnI	GCTCC	2 cut(s)	88, 285
Lsp1109I	GCAGC	5 cut(s)	37, 40, 439, 799, 821
LweI	GCATC	5 cut(s)	337, 493, 551, 643, 773
MaeI	CTAG	3 cut(s)	186, 282, 327
MaeIII	GTNAC	4 cut(s)	377, 485, 535, 1076
MalI	GATC	2 cut(s)	206, 275
MboI	GATC	2 cut(s)	204, 273
MboII	GAAGA	7 cut(s)	260, 270, 366, 509, 632, 903, 927
MflI	RGATCY	1 cut(s)	273
MhlI	GDGCHC	2 cut(s)	235, 684
MlsI	TGGCCA	2 cut(s)	399, 1131
MluCI	AATT	5 cut(s)	109, 556, 634, 754, 889
MluNI	TGGCCA	2 cut(s)	399, 1131
MlyI	GAGTC	2 cut(s)	34, 157
MmeI	TCCRAC	1 cut(s)	747
Mox20I	TGGCCA	2 cut(s)	399, 1131
MscI	TGGCCA	2 cut(s)	399, 1131
MseI	TTAA	6 cut(s)	318, 384, 443, 984, 1113, 1148
Msp20I	TGGCCA	2 cut(s)	399, 1131
MspA1I	CMGCKG	1 cut(s)	812
MspI	CCGG	1 cut(s)	351
MspR9I	CCNGG	3 cut(s)	300, 439, 781
Mva1269I	GAATGC	1 cut(s)	815
MvaI	CCWGG	3 cut(s)	300, 439, 781
MwoI	GCNNNNNNNGC	4 cut(s)	254, 465, 688, 697
NdeI	CATATG	1 cut(s)	402
NdeII	GATC	2 cut(s)	204, 273
NheI	GCTAGC	1 cut(s)	326
NlaIII	CATG	5 cut(s)	215, 257, 347, 378, 1136
NmuCI	GTSAC	2 cut(s)	377, 535
NsbI	TGCGCA	1 cut(s)	467
NspI	RCATGY	2 cut(s)	215, 257
NspV	TTCGAA	1 cut(s)	629
PaeI	GCATGC	1 cut(s)	257
PagI	TCATGA	1 cut(s)	343
PctI	GAATGC	1 cut(s)	815
PfeI	GAWTC	2 cut(s)	694, 842
PkrI	GCNGC	5 cut(s)	52, 55, 454, 811, 814
PleI	GAGTC	2 cut(s)	33, 157
PpsI	GAGTC	2 cut(s)	33, 157
PshAI	GACNNNNGTC	1 cut(s)	748
PshBI	ATTAAT	2 cut(s)	384, 1113
Psp124BI	GAGCTC	1 cut(s)	684
Psp6I	CCWGG	3 cut(s)	298, 437, 779
PspEI	GGTNACC	1 cut(s)	1076
PspGI	CCWGG	3 cut(s)	298, 437, 779
PsuI	RGATCY	1 cut(s)	273
PvuII	CAGCTG	1 cut(s)	812
RsaI	GTAC	1 cut(s)	31
RsaNI	GTAC	1 cut(s)	30
SacI	GAGCTC	1 cut(s)	684
SaqAI	TTAA	6 cut(s)	318, 384, 443, 984, 1113, 1148
SatI	GCNGC	5 cut(s)	51, 54, 453, 810, 813
Sau3AI	GATC	2 cut(s)	204, 273
SchI	GAGTC	2 cut(s)	34, 157
ScrFI	CCNGG	3 cut(s)	300, 439, 781
SduI	GDGCHC	2 cut(s)	235, 684
SfaNI	GCATC	5 cut(s)	337, 493, 551, 643, 773
SfcI	CTRYAG	1 cut(s)	360
SfuI	TTCGAA	1 cut(s)	629
SmlI	CTYRAG	3 cut(s)	677, 704, 804
SmoI	CTYRAG	3 cut(s)	677, 704, 804
SphI	GCATGC	1 cut(s)	257
Sse9I	AATT	5 cut(s)	109, 556, 634, 754, 889
SsiI	CCGC	2 cut(s)	617, 1090
SspMI	CTAG	3 cut(s)	186, 282, 327
SstI	GAGCTC	1 cut(s)	684
StyD4I	CCNGG	3 cut(s)	298, 437, 779
TaaI	ACNGT	2 cut(s)	310, 364
TaqI	TCGA	3 cut(s)	105, 423, 629
TaqII	GACCGA	1 cut(s)	468
TasI	AATT	5 cut(s)	109, 556, 634, 754, 889
TfiI	GAWTC	2 cut(s)	694, 842
Tru1I	TTAA	6 cut(s)	318, 384, 443, 984, 1113, 1148
Tru9I	TTAA	6 cut(s)	318, 384, 443, 984, 1113, 1148
TscAI	CASTG	1 cut(s)	475
TseFI	GTSAC	2 cut(s)	377, 535
TseI	GCWGC	5 cut(s)	50, 53, 452, 809, 812
Tsp45I	GTSAC	2 cut(s)	377, 535
TspDTI	ATGAA	8 cut(s)	17, 441, 573, 593, 810, 842, 882, 894
TspGWI	ACGGA	2 cut(s)	760, 932
TspRI	CASTG	1 cut(s)	475
VneI	GTGCAC	1 cut(s)	231
VspI	ATTAAT	2 cut(s)	384, 1113
XapI	RAATTY	3 cut(s)	556, 754, 889
XceI	RCATGY	2 cut(s)	215, 257
XcmI	CCANNNNNNNNNTGG	1 cut(s)	41
XspI	CTAG	3 cut(s)	186, 282, 327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.