Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8338979.1

Orthogroup ID

OG0000962

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 868

Gene Structure 868 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8338979.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

caaataccgcagtttcttctggaagcgaatgtgaagccaattctatgtacacagcctaggaggtttgcggtagtagctgttgcgaaaatggttgcacaagctcgtaatagtgagcttggtggagaggttggatatcacataggccactcaaagcacttgtcaccaagatcagtgattgtttttaaaactgctggagttttactggatgaaatgcgggacaaggggatgcatgcgcttgattacaaggtcattgttctcgatgaagtgcatgaaagatctgtggagtctgatcttgttcttgtttgtgtgaagcagtttatgatgaagaacaataacttgagggtggtgttgatgtctgcaacggctgatattaataggtacagggattactttaaggatcttggcagggatgaacgagtggaagtgcttgcaatccctacctctggacagaaaaccatttttcagaaaagggtttcttatcttgaagaggcacttactcttttctttactgttaatcgctttgctgtatacttcttacgtttatttaagaccaccgcctcaattaatgttccttttgcatgcttgttcatctgtggtactcttattggtgctgatccgttatgcaccaataagcaagagaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C zf-CCCH

Protein Analysis

214

Amino Acids

24.22

Weight (kDa)

8.97

Isoelectric Point (pI)

37.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10930
fragaria_vesca	FvH4_5g28920 FvH4_5g28920
malus_domestica	MD02G1262900.v1.1 MD07G1056800.v1.1 MD07G1057400.v1.1
prunus_persica	Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1
pyrus_communis	pycom02g22480 pycom02g22490 pycom02g22530 pycom07g04380
rosa_chinensis	RchiOBHm_Chr2g0101731 RchiOBHm_Chr2g0146651 RchiOBHm_Chr3g0471841 RchiOBHm_Chr4g0402091 RchiOBHm_Chr5g0019321 RchiOBHm_Chr7g0221231
rosa_laevigata	RLG00000002168 RLG00000008436
rosa_multiflora	Rmu_co8338979.1_g000001 Rmu_co8389917.1_g000001 Rmu_sc0000212.1_g000013 Rmu_sc0000324.1_g000016 Rmu_sc0000518.1_g000001 Rmu_sc0000808.1_g000043 Rmu_sc0002206.1_g000018 Rmu_sc0002551.1_g000024 Rmu_sc0004296.1_g000023 Rmu_sc0009806.1_g000017 Rmu_sc0032411.1_g000001 Rmu_ssc0000291.1_g000025
rosa_roxburghii	Rroxscaffold_176G00431210 Rroxscaffold_1G00026280 Rroxscaffold_3G00238540 Rroxscaffold_4G00313160 Rroxscaffold_4G00330040 Rroxscaffold_5G00342230 Rroxscaffold_5G00352050
rosa_rugosa	Rorug07G0201600 Rorug07G0253300
rosa_samantha	Rh1BG131100 Rh1CG101400 Rh2BG215600 Rh2CG271000 Rh4DG065200 Rh4DG134600 Rh5AG275200 Rh5AG434000 Rh7AG340500 Rh7BG172400 Rh7BG331600 Rh7BG331700 Rh7CG358400 Rh7DG335700 Rh7DG335800 Rh7DG339200 Rh7DG339300
rosa_wichuraiana	Rw6G023870 Rw7G028980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	528
AciI	CCGC	4 cut(s)	8, 68, 214, 555
AclWI	GGATC	2 cut(s)	405, 608
AfaI	GTAC	3 cut(s)	49, 380, 598
AfiI	CCNNNNNNNGG	1 cut(s)	443
AgsI	TTSAA	1 cut(s)	485
AluBI	AGCT	3 cut(s)	77, 101, 115
AluI	AGCT	3 cut(s)	77, 101, 115
AlwI	GGATC	2 cut(s)	405, 608
AoxI	GGCC	1 cut(s)	142
ArsI	GACNNNNNNTTYG	2 cut(s)	143, 175
AseI	ATTAAT	2 cut(s)	372, 564
AspA2I	CCTAGG	1 cut(s)	56
AspLEI	GCGC	1 cut(s)	235
AsuHPI	GGTGA	1 cut(s)	153
AvrII	CCTAGG	1 cut(s)	56
BceAI	ACGGC	1 cut(s)	378
BfaI	CTAG	1 cut(s)	57
BglII	AGATCT	1 cut(s)	275
BlnI	CCTAGG	1 cut(s)	56
BmsI	GCATC	1 cut(s)	216
BpmI	CTGGAG	1 cut(s)	213
BpuEI	CTTGAG	1 cut(s)	358
BsaJI	CCNNGG	1 cut(s)	56
Bsc4I	CCNNNNNNNGG	1 cut(s)	443
Bse1I	ACTGG	1 cut(s)	207
BseDI	CCNNGG	1 cut(s)	56
BseGI	GGATG	3 cut(s)	211, 231, 415
BseLI	CCNNNNNNNGG	1 cut(s)	443
BseNI	ACTGG	1 cut(s)	207
BshFI	GGCC	1 cut(s)	144
BslFI	GGGAC	1 cut(s)	230
BslI	CCNNNNNNNGG	1 cut(s)	443
BsmFI	GGGAC	1 cut(s)	230
BsnI	GGCC	1 cut(s)	144
Bsp1407I	TGTACA	1 cut(s)	47
Bsp143I	GATC	5 cut(s)	167, 275, 289, 397, 613
BspACI	CCGC	4 cut(s)	8, 68, 214, 555
BspANI	GGCC	1 cut(s)	144
BspPI	GGATC	2 cut(s)	405, 608
BsrGI	TGTACA	1 cut(s)	47
BsrI	ACTGG	1 cut(s)	207
BssECI	CCNNGG	1 cut(s)	56
BssMI	GATC	5 cut(s)	167, 275, 289, 397, 613
BssNAI	GTATAC	1 cut(s)	529
BssT1I	CCWWGG	1 cut(s)	56
Bst1107I	GTATAC	1 cut(s)	529
Bst4CI	ACNGT	1 cut(s)	511
Bst6I	CTCTTC	1 cut(s)	480
BstAUI	TGTACA	1 cut(s)	47
BstC8I	GCNNGC	3 cut(s)	231, 429, 580
BstF5I	GGATG	3 cut(s)	211, 231, 415
BstHHI	GCGC	1 cut(s)	235
BstKTI	GATC	5 cut(s)	170, 278, 292, 400, 616
BstMBI	GATC	5 cut(s)	167, 275, 289, 397, 613
BstMWI	GCNNNNNNNGC	1 cut(s)	74
BstNSI	RCATGY	2 cut(s)	233, 582
BstX2I	RGATCY	2 cut(s)	275, 397
BstYI	RGATCY	2 cut(s)	275, 397
BstZ17I	GTATAC	1 cut(s)	529
BsuRI	GGCC	1 cut(s)	144
BtsCI	GGATG	3 cut(s)	211, 231, 415
BtsIMutI	CAGTG	1 cut(s)	177
Cac8I	GCNNGC	3 cut(s)	231, 429, 580
CfoI	GCGC	1 cut(s)	235
Csp6I	GTAC	3 cut(s)	48, 379, 597
CviAII	CATG	3 cut(s)	230, 269, 579
CviJI	RGCY	7 cut(s)	37, 55, 77, 101, 115, 144, 365
CviKI_1	RGCY	7 cut(s)	37, 55, 77, 101, 115, 144, 365
CviQI	GTAC	3 cut(s)	48, 379, 597
DpnI	GATC	5 cut(s)	169, 277, 291, 399, 615
DpnII	GATC	5 cut(s)	167, 275, 289, 397, 613
DraI	TTTAAA	1 cut(s)	184
Eam1104I	CTCTTC	1 cut(s)	480
EarI	CTCTTC	1 cut(s)	480
Eco130I	CCWWGG	1 cut(s)	56
Eco32I	GATATC	1 cut(s)	134
EcoRV	GATATC	1 cut(s)	134
EcoT14I	CCWWGG	1 cut(s)	56
EcoT22I	ATGCAT	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	56
FaeI	CATG	3 cut(s)	233, 272, 582
FaiI	YATR	8 cut(s)	46, 140, 231, 270, 320, 529, 580, 622
FalI	AAGNNNNNCTT	4 cut(s)	460, 492, 477, 509
FaqI	GGGAC	1 cut(s)	230
FatI	CATG	3 cut(s)	229, 268, 578
FauI	CCCGC	1 cut(s)	207
FblI	GTMKAC	1 cut(s)	528
FokI	GGATG	3 cut(s)	218, 238, 422
FspBI	CTAG	1 cut(s)	57
GlaI	GCGC	1 cut(s)	234
GsuI	CTGGAG	1 cut(s)	213
HaeIII	GGCC	1 cut(s)	144
HhaI	GCGC	1 cut(s)	235
Hin1II	CATG	3 cut(s)	233, 272, 582
Hin6I	GCGC	1 cut(s)	233
HinP1I	GCGC	1 cut(s)	233
HinfI	GANTC	1 cut(s)	284
HphI	GGTGA	1 cut(s)	153
Hpy166II	GTNNAC	2 cut(s)	50, 529
Hpy188I	TCNGA	2 cut(s)	289, 465
Hpy188III	TCNNGA	4 cut(s)	20, 257, 444, 482
Hpy8I	GTNNAC	2 cut(s)	50, 529
HpyCH4III	ACNGT	1 cut(s)	511
HpyCH4IV	ACGT	1 cut(s)	538
HpyCH4V	TGCA	7 cut(s)	95, 229, 268, 359, 431, 578, 624
HpyF10VI	GCNNNNNNNGC	1 cut(s)	74
HpySE526I	ACGT	1 cut(s)	538
Hsp92II	CATG	3 cut(s)	233, 272, 582
HspAI	GCGC	1 cut(s)	233
Kzo9I	GATC	5 cut(s)	167, 275, 289, 397, 613
LpnPI	CCDG	6 cut(s)	5, 177, 188, 367, 391, 429
LweI	GCATC	1 cut(s)	216
MaeI	CTAG	1 cut(s)	57
MaeII	ACGT	1 cut(s)	538
MaeIII	GTNAC	1 cut(s)	159
MalI	GATC	5 cut(s)	169, 277, 291, 399, 615
MboI	GATC	5 cut(s)	167, 275, 289, 397, 613
MboII	GAAGA	3 cut(s)	8, 337, 497
MflI	RGATCY	2 cut(s)	275, 397
MluCI	AATT	3 cut(s)	39, 561, 640
MlyI	GAGTC	1 cut(s)	293
MmeI	TCCRAC	1 cut(s)	109
MnlI	CCTC	6 cut(s)	54, 118, 333, 451, 481, 568
Mph1103I	ATGCAT	1 cut(s)	231
MseI	TTAA	7 cut(s)	183, 372, 393, 513, 546, 564, 643
MwoI	GCNNNNNNNGC	1 cut(s)	74
NdeII	GATC	5 cut(s)	167, 275, 289, 397, 613
NlaIII	CATG	3 cut(s)	233, 272, 582
NmuCI	GTSAC	1 cut(s)	159
NsiI	ATGCAT	1 cut(s)	231
NspI	RCATGY	2 cut(s)	233, 582
PaeI	GCATGC	2 cut(s)	233, 582
PleI	GAGTC	1 cut(s)	292
PpsI	GAGTC	1 cut(s)	292
PshBI	ATTAAT	2 cut(s)	372, 564
PsuI	RGATCY	2 cut(s)	275, 397
RsaI	GTAC	3 cut(s)	49, 380, 598
RsaNI	GTAC	3 cut(s)	48, 379, 597
SaqAI	TTAA	7 cut(s)	183, 372, 393, 513, 546, 564, 643
Sau3AI	GATC	5 cut(s)	167, 275, 289, 397, 613
SchI	GAGTC	1 cut(s)	293
SetI	ASST	9 cut(s)	65, 79, 103, 117, 129, 249, 380, 443, 541
SfaNI	GCATC	1 cut(s)	216
SmlI	CTYRAG	1 cut(s)	337
SmoI	CTYRAG	1 cut(s)	337
SphI	GCATGC	2 cut(s)	233, 582
Sse9I	AATT	3 cut(s)	39, 561, 640
SsiI	CCGC	4 cut(s)	8, 68, 214, 555
SspMI	CTAG	1 cut(s)	57
StyI	CCWWGG	1 cut(s)	56
TaaI	ACNGT	1 cut(s)	511
TaiI	ACGT	1 cut(s)	541
TaqI	TCGA	1 cut(s)	258
TasI	AATT	3 cut(s)	39, 561, 640
TatI	WGTACW	1 cut(s)	47
Tru1I	TTAA	7 cut(s)	183, 372, 393, 513, 546, 564, 643
Tru9I	TTAA	7 cut(s)	183, 372, 393, 513, 546, 564, 643
TscAI	CASTG	1 cut(s)	177
TseFI	GTSAC	1 cut(s)	159
Tsp45I	GTSAC	1 cut(s)	159
TspDTI	ATGAA	6 cut(s)	222, 276, 285, 338, 426, 577
TspGWI	ACGGA	1 cut(s)	606
TspRI	CASTG	1 cut(s)	177
VspI	ATTAAT	2 cut(s)	372, 564
XceI	RCATGY	2 cut(s)	233, 582
XmaJI	CCTAGG	1 cut(s)	56
XmiI	GTMKAC	1 cut(s)	528
XspI	CTAG	1 cut(s)	57
Zsp2I	ATGCAT	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.