Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000962

Physical Location & Seq

Genomic Coordinates Reverse (-)

20032376 .. 20049858

Gene Structure 17483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g28920.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3687 bp

ATGAATAGAGGAGAATCACAGATGAGTCGTACCCATTCCGGCAGAGCTGCTGCTGCTGGTGTTGATGACACCACGCCTTTCAAACTCGGTTTATTGGAGCATCTGAGAGCACTTGACAATTTCTCAAACCCAACTCAACTTCTCAGCTCACATTTCCTTTTCTCCTTACCAACACAAAAACCACTTAATCACCAAGCTGGAATGGCTACTAGCTCAATGGCCTTCCCAATCCAGCATATTCAAAGATTAGAGAGTGCGCAAGTTCAAAAGGCTTGGCATGCGCTTTCCAATCTTAAGGTATCTTCTAGGAATTACACAAGACCTGGAAAAACCGTCGAAGTTAAAAATGCTAGCGCTGAGTTTAATCATGATGTGGGAAGAACTGCAGTTGTAAGCTCATGGTGCATTAATAAAAGTAGCATCCCTATGCAAACACATCAATACATCGATGAAAGCAATGCCAAGTTAAGTGAAGCCGCAACCTGTCTGCGCAGTGGGTTGCGGTCAAGTAACGATAATGTTGCAGATGCAGGAATAAGTCTTTCGGGGAAAAGTCAGTTCACAGAATCACTGGTCATCAAATCTCATTCTCAGATGTCAGGTGGTTCATTTAGCAATAACTTCGTTCATACCAGCCAACCGAAAGAATGTTTGAATAAATTGGTGAATGAGATGGATGATGATGATGATGATGACGACAGCATACTTGAGAATATTGATGTTGACCACATAGTGGAACAGTACCAATCAAGTTGCACACCTAAACCATCAATTTCCAAGCTTCCACCTCTTACTCCATCTATACACACAGAGAGACAAGAAGCGACTTGTTTGCCACCAGAACTGTGTACAAATTGTGTTCATGGATTTATGATAGGAGTTTGCCAAGAAGCTGCAAATCATTTGCAAGAATTGAAGGACAGGCTAATTACCATATCAAATGAACTGCTTGATGATGTCAATGAGCTCAGTCCAGAGCAAATAGAGAAGCTTCGCCAAGATAGGTTGCAGCTCAACAAGCAGATTCAGGCACTTGAGAGATATCTCTGTACCAACACATTGGATGAGGAAAGACGGAAGTCACATTTTTCCTTATCCACAACAACTCCCAGTGCTTTCCGATATGAAACACCTCAAGCACCCCTATTCAGGACTGACCCCATGAGATTTGATTCAGAGGTCCATTCACATAACAAGGCTGGAGGATATGCAGAATGGAATTCATCATCAGTTTCATCCTCTTCTACGGATAAGTTTGGTTTCTCATCTTTTCCTGTGGAGAGGGAACCTTACATCCCAAAGTTTGTTGATGTTAACTATATTGAAGGTTCAAATGACAATAAGTGGAGAGACAGTCCTTTCCCATGGACTAAAGAGCTGGAGGCTAAGAACAAGAGAGTGTTTGGTAACCACTCTTTCCGCCTCAACCAAAGAGAGGTCATCAATGCTACAATGAGTGGCCGTGATGTTTTTGTTTTAATGCCAACTGGTGGGGGTAAGAGCCTGACATATCAGCTTCCTGCTGTAATTTGTCCAGGCTTAACTTTGGTAATCTCTCCTCTCGTGTCGCTTATTCAAGATCAAATAATGCACTTATTTCAGGCAAATATTCCTGCTGCTTACCTAAGTGCCAATATGGAGTGGAGTGAACAACAGGAGATCCTTAGAGAAGTGAGTTCTGAATATTGTAAATACAAGCTGTTATATGTCACCCCTGAAAAAGTTGCCAAAAGTGATTTTCTGTTGCGGAAATTGGAGAGTTTAAACGCTCGTCAGTTGCTTTCTAGGATTGTAATTGATGAAGCTCATTGTGTGAGTCAGTGGGGGCATGATTTCCGACCAGATTATCAGGCTCTTGGTATCTTGAAGCAGAAGTTCCCAGATACTCCAGTGTTGGCTTTAACAGCTACAGCAACAGCTAGTGTAAAAGAAGATGTTGTGCAAGCTCTTGGTCTTGTAAACTGTATTGTTTTCCGGCAAAGTTTCAATCGCCCAAATCTATGGTATTCTGTTATTCCCAAGACAAAGAAATGCATAGAAGATATTGACAAGTTCATTAAAGATAATCACTATGATGAAAGTGGAATAATATATTGTCTATCAAGAATGGACTGTGAAAAAGTTGCTGAAAAATTACAGGAATGTGGGCATAAAGCAGCATTTTACCATGGTAGTATGGATCCTGCTCAACGTGCCTTTGTCCAGAAACAGTGGAGTAAAGATGAAATCAACATTATCTGTGCTACAGTGGCATTTGGAATGGGTATAAACAAGCCTGATGTGCGCTTTGTAATTCATCATTCTCTTCCCAAGTCTATTGAAGGCTATCATCAGGAATGTGGTCGAGCTGGTAGAGATGGCCAACGTGCATCTTGTGTGTTGTATTACAGTTATAGTGACTATATACGAGTCAAACATATGATTAGCCAAGGAGTTATAGAGCAAAGCACATTGACACCGGGACAAAATCGTATGAATACAGCTAATTCTGGGAGAATACTGGAAACAAATACTGAGAATCTTTTGCGCATGGTGAGTTATTGTGAAAATGATGTTGATTGCCGAAGGCTTCTACAACTTATTCATTTTGGAGAAAAATTTGATTGTACCACCTGCAATAAGACGTGCGATAATTGTTTAAAGATCAAGAGTTTCATTGAGAAGGATGTCACGGAGATAGCAAAGCAACTGGTCGAACTGGTGAAATCAGCAGGGCAGCAGTGTTCATCAGCTCATATATTAGAAGTCTACAGGGGCTCCTTCAGCCAATTTGTCAAGAAACATGGGCATCATACTTTGAGTCTGCATGGAGCAGGAAAACATCTACCCAAGGGAGAAGCTTCGCGTGTATTACGCCATCTTGTTACCGAGGACCTGCTTGTAGAAGAAGTCAAGAAAAGTGATATTTATGGATCTGTATCATCAATTCTAAAGGTTAATGAGTTCAAAGCATGCGAACTTTTCTCTGGCAGGAAAACAGTCATGTTAAGATTCCCTTCCTCTATAAAAGCTTCAAAGCAGTGGAACTCTGAAGCGACTTCTACTAAAGGTTCACTGGCTTCTGGGAAGCTAAGGACTCAGCAACTTGGCACCAGACAACCTCAGTCCAATGGAGATGTGGATCTCTCTACCCAATTATTTGTTTCTTTGAAAATGCTTCGAGATACTATCGTAAGGGAAGCTGGGGATGGGGTTATGGCATACCACATATTCGGGAATAAGCAGTTGAAAGATATGAGCGCCATAATTCCCAGAACGATGCAGGAACTTGAGGAAATCAATGGGATTAACAAGGGTAAGGTGATGAAGTATGGAGATCGGGTACTCGAAACCATTGAATCTACCATCAAGGATTACTACAAGACATACAAAAACAGCAGCAGTAGCAATGACAGTAGTGAGGGCAAGAGAAAAAGAGAAGGTAACAAAGATCAAAATAGGCATGTAGAGGATGATGACTTCACCAAAAGCACTGATCGATCAAAGAAAAGGGCCTCAAAAAGGCAGAGCAAACCTATTGAAGACTACAGTTATCAGGAGCCGGATTCCAACCAAATCATGGATGATGATCTAGATGTGTATGGTTATAATTTTGAAGTGAATGCTTCAGCTACAAAGACTGTTCAAAACGTTGGTGGAAGAGTGCTTCCCCAATGGTCGACACATGGAAATGGGCGACAACGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005911 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009266 GO:0009378 GO:0009409 GO:0009506 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0032392 GO:0032508 GO:0032870 GO:0033554 GO:0033993 GO:0034641 GO:0042221 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0055044 GO:0070035 GO:0070417 GO:0070887 GO:0071103 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097305 GO:0097306 GO:0140097 GO:1901360 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko03018 ko03440 ko03460 map03018 map03440 map03460

Pfam Domains

Protein Families

DEAD HRDC Helicase_C RQC RecQ_Zn_bind

Protein Analysis

1229

Amino Acids

138.29

Weight (kDa)

7.37

Isoelectric Point (pI)

48.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ResIII	PF04851	472 - 638	8.4e-06	Type III restriction enzyme, res subunit
DEAD	PF00270	476 - 643	2.1e-25	DEAD/DEAH box helicase
Helicase_C	PF00271	680 - 787	1.2e-19	Helicase conserved C-terminal domain
RecQ_Zn_bind	PF16124	798 - 880	2.3e-14	RecQ zinc-binding
RQC	PF09382	887 - 1001	9.5e-21	RQC domain
HRDC	PF00570	1044 - 1112	3.5e-13	HRDC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10930
fragaria_vesca	FvH4_5g28920 FvH4_5g28920
malus_domestica	MD02G1262900.v1.1 MD07G1056800.v1.1 MD07G1057400.v1.1
prunus_persica	Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1
pyrus_communis	pycom02g22480 pycom02g22490 pycom02g22530 pycom07g04380
rosa_chinensis	RchiOBHm_Chr2g0101731 RchiOBHm_Chr2g0146651 RchiOBHm_Chr3g0471841 RchiOBHm_Chr4g0402091 RchiOBHm_Chr5g0019321 RchiOBHm_Chr7g0221231
rosa_laevigata	RLG00000002168 RLG00000008436
rosa_multiflora	Rmu_co8338979.1_g000001 Rmu_co8389917.1_g000001 Rmu_sc0000212.1_g000013 Rmu_sc0000324.1_g000016 Rmu_sc0000518.1_g000001 Rmu_sc0000808.1_g000043 Rmu_sc0002206.1_g000018 Rmu_sc0002551.1_g000024 Rmu_sc0004296.1_g000023 Rmu_sc0009806.1_g000017 Rmu_sc0032411.1_g000001 Rmu_ssc0000291.1_g000025
rosa_roxburghii	Rroxscaffold_176G00431210 Rroxscaffold_1G00026280 Rroxscaffold_3G00238540 Rroxscaffold_4G00313160 Rroxscaffold_4G00330040 Rroxscaffold_5G00342230 Rroxscaffold_5G00352050
rosa_rugosa	Rorug07G0201600 Rorug07G0253300
rosa_samantha	Rh1BG131100 Rh1CG101400 Rh2BG215600 Rh2CG271000 Rh4DG065200 Rh4DG134600 Rh5AG275200 Rh5AG434000 Rh7AG340500 Rh7BG172400 Rh7BG331600 Rh7BG331700 Rh7CG358400 Rh7DG335700 Rh7DG335800 Rh7DG339200 Rh7DG339300
rosa_wichuraiana	Rw6G023870 Rw7G028980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	3588
AarI	CACCTGC	1 cut(s)	2621
Acc16I	TGCGCA	3 cut(s)	258, 491, 2528
Acc36I	ACCTGC	2 cut(s)	2621, 2883
AccB1I	GGYRCC	1 cut(s)	3089
AccB7I	CCANNNNNTGG	3 cut(s)	733, 1490, 3559
AccI	GTMKAC	2 cut(s)	2748, 3659
AccII	CGCG	1 cut(s)	2845
AciI	CCGC	4 cut(s)	477, 502, 1420, 1747
AclI	AACGTT	1 cut(s)	3630
AclWI	GGATC	5 cut(s)	1654, 2174, 2187, 2920, 3129
AcoI	YGGCCR	2 cut(s)	1459, 2359
AcsI	RAATTY	2 cut(s)	1219, 2597
AcuI	CTGAAG	3 cut(s)	2746, 3051, 3591
AdeI	CACNNNGTG	1 cut(s)	733
AfaI	GTAC	6 cut(s)	31, 743, 850, 1051, 2608, 3324
AfeI	AGCGCT	1 cut(s)	355
AfiI	CCNNNNNNNGG	6 cut(s)	733, 1149, 1435, 1490, 3501, 3559
AflII	CTTAAG	1 cut(s)	293
AjiI	CACGTC	1 cut(s)	2625
AjnI	CCWGG	2 cut(s)	322, 1534
AloI	GAACNNNNNNTCC	2 cut(s)	1278, 1310
Alw21I	GWGCWC	2 cut(s)	112, 969
Alw26I	GTCTC	2 cut(s)	808, 1344
AlwI	GGATC	5 cut(s)	1654, 2174, 2187, 2920, 3129
Aor51HI	AGCGCT	1 cut(s)	355
AoxI	GGCC	4 cut(s)	219, 1459, 2359, 3492
ApeKI	GCWGC	9 cut(s)	47, 50, 53, 893, 1009, 1616, 2156, 2716, 3378
ApoI	RAATTY	2 cut(s)	1219, 2597
AseI	ATTAAT	1 cut(s)	408
AspLEI	GCGC	7 cut(s)	259, 283, 356, 492, 2286, 2529, 3242
AspS9I	GGNCC	3 cut(s)	1180, 2872, 3492
AsuC2I	CCSGG	1 cut(s)	2460
AsuHPI	GGTGA	7 cut(s)	182, 676, 1702, 2545, 2713, 3313, 3454
AsuNHI	GCTAGC	1 cut(s)	350
AvaII	GGWCC	2 cut(s)	1180, 2872
BaeI	ACNNNNGTAYC	4 cut(s)	1875, 1908, 3156, 3189
BalI	TGGCCA	1 cut(s)	2361
BamHI	GGATCC	1 cut(s)	2179
BanI	GGYRCC	1 cut(s)	3089
BanII	GRGCYC	2 cut(s)	969, 2759
BauI	CACGAG	1 cut(s)	1562
BbsI	GAAGAC	1 cut(s)	3528
Bbv12I	GWGCWC	2 cut(s)	112, 969
BbvI	GCAGC	9 cut(s)	34, 37, 40, 880, 1021, 1603, 2168, 2728, 3390
BccI	CCATC	7 cut(s)	667, 775, 805, 2351, 2865, 3182, 3353
BceAI	ACGGC	1 cut(s)	1446
BcgI	CGANNNNNNTGC	6 cut(s)	503, 537, 604, 638, 814, 848
BciT130I	CCWGG	2 cut(s)	324, 1536
BcnI	CCSGG	1 cut(s)	2460
BcoDI	GTCTC	2 cut(s)	808, 1344
BfaI	CTAG	6 cut(s)	210, 306, 351, 1785, 1920, 3572
BfmI	CTRYAG	5 cut(s)	384, 1908, 2244, 2749, 3526
BfoI	RGCGCY	2 cut(s)	357, 3243
BfrI	CTTAAG	1 cut(s)	293
BfuAI	ACCTGC	2 cut(s)	2621, 2883
Bme1390I	CCNGG	3 cut(s)	324, 1536, 2460
Bme18I	GGWCC	2 cut(s)	1180, 2872
BmgBI	CACGTC	1 cut(s)	2625
BmgT120I	GGNCC	3 cut(s)	1180, 2872, 3492
BmiI	GGNNCC	5 cut(s)	1287, 2181, 2758, 3091, 3540
BmrFI	CCNGG	3 cut(s)	324, 1536, 2460
BmrI	ACTGGG	1 cut(s)	1104
BmsI	GCATC	6 cut(s)	109, 429, 517, 2378, 2797, 3249
BmtI	GCTAGC	1 cut(s)	354
BmuI	ACTGGG	1 cut(s)	1104
BoxI	GACNNNNGTC	1 cut(s)	1078
BpiI	GAAGAC	1 cut(s)	3528
BpmI	CTGGAG	3 cut(s)	1221, 1400, 1872
Bpu10I	CCTNAGC	1 cut(s)	3071
BpuEI	CTTGAG	4 cut(s)	728, 1055, 1119, 3290
BpuMI	CCSGG	1 cut(s)	2460
Bsa29I	ATCGAT	2 cut(s)	447, 3478
BsaBI	GATNNNNATC	3 cut(s)	2917, 3120, 3567
BsaJI	CCNNGG	5 cut(s)	1364, 2167, 2428, 2829, 2868
BsaXI	ACNNNNNCTCC	8 cut(s)	1090, 1120, 1339, 1369, 2741, 2771, 3306, 3336
Bsc4I	CCNNNNNNNGG	6 cut(s)	733, 1149, 1435, 1490, 3501, 3559
Bse1I	ACTGG	8 cut(s)	576, 1110, 1492, 1889, 2505, 2694, 2703, 3060
Bse3DI	GCAATG	2 cut(s)	463, 3394
Bse8I	GATNNNNATC	3 cut(s)	2917, 3120, 3567
BseBI	CCWGG	2 cut(s)	324, 1536
BseCI	ATCGAT	2 cut(s)	447, 3478
BseDI	CCNNGG	5 cut(s)	1364, 2167, 2428, 2829, 2868
BseGI	GGATG	9 cut(s)	420, 682, 1069, 1235, 1293, 2671, 3193, 3457, 3568
BseJI	GATNNNNATC	3 cut(s)	2917, 3120, 3567
BseLI	CCNNNNNNNGG	6 cut(s)	733, 1149, 1435, 1490, 3501, 3559
BseMI	GCAATG	2 cut(s)	463, 3394
BseMII	CTCAG	8 cut(s)	95, 157, 348, 605, 982, 2505, 3092, 3116
BseNI	ACTGG	8 cut(s)	576, 1110, 1492, 1889, 2505, 2694, 2703, 3060
BseRI	GAGGAG	2 cut(s)	24, 1548
BseXI	GCAGC	9 cut(s)	34, 37, 40, 880, 1021, 1603, 2168, 2728, 3390
BseYI	CCCAGC	1 cut(s)	3182
Bsh1236I	CGCG	1 cut(s)	2845
BshFI	GGCC	4 cut(s)	221, 1461, 2361, 3494
BshNI	GGYRCC	1 cut(s)	3089
BshVI	ATCGAT	2 cut(s)	447, 3478
BsiHKAI	GWGCWC	2 cut(s)	112, 969
BsiSI	CCGG	4 cut(s)	39, 1975, 2459, 3542
BslFI	GGGAC	1 cut(s)	2475
BslI	CCNNNNNNNGG	6 cut(s)	733, 1149, 1435, 1490, 3501, 3559
BsmAI	GTCTC	2 cut(s)	808, 1344
BsmFI	GGGAC	1 cut(s)	2475
BsmI	GAATGC	1 cut(s)	3607
BsnI	GGCC	4 cut(s)	221, 1461, 2361, 3494
Bsp1286I	GDGCHC	3 cut(s)	112, 969, 2759
Bsp1407I	TGTACA	1 cut(s)	848
Bsp19I	CCATGG	2 cut(s)	1364, 2167
BspACI	CCGC	4 cut(s)	477, 502, 1420, 1747
BspANI	GGCC	4 cut(s)	221, 1461, 2361, 3494
BspCNI	CTCAG	8 cut(s)	96, 156, 349, 604, 981, 2506, 3091, 3115
BspDI	ATCGAT	2 cut(s)	447, 3478
BspFNI	CGCG	1 cut(s)	2845
BspHI	TCATGA	1 cut(s)	367
BspLI	GGNNCC	5 cut(s)	1287, 2181, 2758, 3091, 3540
BspMAI	CTGCAG	1 cut(s)	388
BspMI	ACCTGC	2 cut(s)	2621, 2883
BspOI	GCTAGC	1 cut(s)	354
BspPI	GGATC	5 cut(s)	1654, 2174, 2187, 2920, 3129
BspT107I	GGYRCC	1 cut(s)	3089
BspTI	CTTAAG	1 cut(s)	293
BsrDI	GCAATG	2 cut(s)	463, 3394
BsrGI	TGTACA	1 cut(s)	848
BsrI	ACTGG	8 cut(s)	576, 1110, 1492, 1889, 2505, 2694, 2703, 3060
BssECI	CCNNGG	5 cut(s)	1364, 2167, 2428, 2829, 2868
BssSI	CACGAG	1 cut(s)	1562
BssT1I	CCWWGG	4 cut(s)	1364, 2167, 2428, 2829
Bst2BI	CACGAG	1 cut(s)	1562
Bst2UI	CCWGG	2 cut(s)	324, 1536
Bst6I	CTCTTC	3 cut(s)	1246, 2310, 3634
BstAFI	CTTAAG	1 cut(s)	293
BstAUI	TGTACA	1 cut(s)	848
BstC8I	GCNNGC	4 cut(s)	279, 352, 1944, 2953
BstDSI	CCRYGG	2 cut(s)	1364, 2167
BstEII	GGTNACC	1 cut(s)	1406
BstENI	CCTNNNNNAGG	1 cut(s)	3499
BstF5I	GGATG	9 cut(s)	420, 682, 1069, 1235, 1293, 2671, 3193, 3457, 3568
BstFNI	CGCG	1 cut(s)	2845
BstH2I	RGCGCY	2 cut(s)	357, 3243
BstHHI	GCGC	7 cut(s)	259, 283, 356, 492, 2286, 2529, 3242
BstMAI	GTCTC	2 cut(s)	808, 1344
BstNI	CCWGG	2 cut(s)	324, 1536
BstNSI	RCATGY	3 cut(s)	281, 2955, 3446
BstPAI	GACNNNNGTC	1 cut(s)	1078
BstPI	GGTNACC	1 cut(s)	1406
BstSCI	CCNGG	3 cut(s)	322, 1534, 2458
BstSFI	CTRYAG	5 cut(s)	384, 1908, 2244, 2749, 3526
BstUI	CGCG	1 cut(s)	2845
BstV1I	GCAGC	9 cut(s)	34, 37, 40, 880, 1021, 1603, 2168, 2728, 3390
BstV2I	GAAGAC	1 cut(s)	3528
BstX2I	RGATCY	4 cut(s)	1659, 2179, 2912, 3121
BstXI	CCANNNNNNTGG	2 cut(s)	1060, 2001
BstYI	RGATCY	4 cut(s)	1659, 2179, 2912, 3121
Bsu15I	ATCGAT	2 cut(s)	447, 3478
BsuRI	GGCC	4 cut(s)	221, 1461, 2361, 3494
BsuTUI	ATCGAT	2 cut(s)	447, 3478
BtgI	CCRYGG	2 cut(s)	1364, 2167
BtrI	CACGTC	1 cut(s)	2625
BtsCI	GGATG	9 cut(s)	420, 682, 1069, 1235, 1293, 2671, 3193, 3457, 3568
BtsI	GCAGTG	3 cut(s)	499, 2726, 3026
BveI	ACCTGC	2 cut(s)	2621, 2883
Cac8I	GCNNGC	4 cut(s)	279, 352, 1944, 2953
CciI	TCATGA	1 cut(s)	367
CfoI	GCGC	7 cut(s)	259, 283, 356, 492, 2286, 2529, 3242
Cfr13I	GGNCC	3 cut(s)	1180, 2872, 3492
ClaI	ATCGAT	2 cut(s)	447, 3478
Csp6I	GTAC	6 cut(s)	30, 742, 849, 1050, 2607, 3323
CviQI	GTAC	6 cut(s)	30, 742, 849, 1050, 2607, 3323
DraI	TTTAAA	2 cut(s)	1764, 2640
DraIII	CACNNNGTG	1 cut(s)	733
EaeI	YGGCCR	2 cut(s)	1459, 2359
Eam1104I	CTCTTC	3 cut(s)	1246, 2310, 3634
EarI	CTCTTC	3 cut(s)	1246, 2310, 3634
EciI	GGCGGA	1 cut(s)	1409
Ecl136II	GAGCTC	1 cut(s)	967
Eco130I	CCWWGG	4 cut(s)	1364, 2167, 2428, 2829
Eco24I	GRGCYC	2 cut(s)	969, 2759
Eco32I	GATATC	1 cut(s)	1043
Eco47I	GGWCC	2 cut(s)	1180, 2872
Eco47III	AGCGCT	1 cut(s)	355
Eco53kI	GAGCTC	1 cut(s)	967
Eco57I	CTGAAG	3 cut(s)	2746, 3051, 3591
Eco91I	GGTNACC	1 cut(s)	1406
EcoICRI	GAGCTC	1 cut(s)	967
EcoNI	CCTNNNNNAGG	1 cut(s)	3499
EcoO109I	RGGNCCY	2 cut(s)	2872, 3492
EcoO65I	GGTNACC	1 cut(s)	1406
EcoRI	GAATTC	1 cut(s)	1219
EcoRII	CCWGG	2 cut(s)	322, 1534
EcoRV	GATATC	1 cut(s)	1043
EcoT14I	CCWWGG	4 cut(s)	1364, 2167, 2428, 2829
EcoT22I	ATGCAT	1 cut(s)	2036
EcoT38I	GRGCYC	2 cut(s)	969, 2759
ErhI	CCWWGG	4 cut(s)	1364, 2167, 2428, 2829
FalI	AAGNNNNNCTT	2 cut(s)	2980, 3012
FaqI	GGGAC	1 cut(s)	2475
FauNDI	CATATG	1 cut(s)	2418
FblI	GTMKAC	2 cut(s)	2748, 3659
FokI	GGATG	9 cut(s)	407, 689, 1076, 1222, 1280, 2678, 3200, 3464, 3575
FriOI	GRGCYC	2 cut(s)	969, 2759
FspBI	CTAG	6 cut(s)	210, 306, 351, 1785, 1920, 3572
FspI	TGCGCA	3 cut(s)	258, 491, 2528
GlaI	GCGC	7 cut(s)	258, 282, 355, 491, 2285, 2528, 3241
GsaI	CCCAGC	1 cut(s)	3186
GsuI	CTGGAG	3 cut(s)	1221, 1400, 1872
HaeII	RGCGCY	2 cut(s)	357, 3243
HaeIII	GGCC	4 cut(s)	221, 1461, 2361, 3494
HapII	CCGG	4 cut(s)	39, 1975, 2459, 3542
HhaI	GCGC	7 cut(s)	259, 283, 356, 492, 2286, 2529, 3242
Hin6I	GCGC	7 cut(s)	257, 281, 354, 490, 2284, 2527, 3240
HinP1I	GCGC	7 cut(s)	257, 281, 354, 490, 2284, 2527, 3240
HincII	GTYRAC	3 cut(s)	724, 1315, 3660
HindII	GTYRAC	3 cut(s)	724, 1315, 3660
HindIII	AAGCTT	4 cut(s)	779, 989, 2838, 3009
HpaI	GTTAAC	1 cut(s)	1315
HpaII	CCGG	4 cut(s)	39, 1975, 2459, 3542
HphI	GGTGA	7 cut(s)	182, 676, 1702, 2545, 2713, 3313, 3454
Hpy166II	GTNNAC	9 cut(s)	561, 724, 849, 1315, 1649, 1960, 2749, 3053, 3660
Hpy188I	TCNGA	7 cut(s)	105, 594, 1121, 1177, 1681, 1838, 3031
Hpy8I	GTNNAC	9 cut(s)	561, 724, 849, 1315, 1649, 1960, 2749, 3053, 3660
Hpy99I	CGWCG	1 cut(s)	338
HpyAV	CCTTC	9 cut(s)	232, 910, 1319, 2315, 2559, 2656, 2770, 3006, 3413
HpyCH4IV	ACGT	4 cut(s)	2191, 2365, 2624, 3630
HpySE526I	ACGT	4 cut(s)	2191, 2365, 2624, 3630
HspAI	GCGC	7 cut(s)	257, 281, 354, 490, 2284, 2527, 3240
KspAI	GTTAAC	1 cut(s)	1315
LmnI	GCTCC	4 cut(s)	97, 2762, 2810, 3538
Lsp1109I	GCAGC	9 cut(s)	34, 37, 40, 880, 1021, 1603, 2168, 2728, 3390
LweI	GCATC	6 cut(s)	109, 429, 517, 2378, 2797, 3249
MaeI	CTAG	6 cut(s)	210, 306, 351, 1785, 1920, 3572
MaeII	ACGT	4 cut(s)	2191, 2365, 2624, 3630
MaeIII	GTNAC	8 cut(s)	509, 1080, 1406, 1708, 2396, 2668, 2863, 3422
MboII	GAAGA	9 cut(s)	294, 390, 1233, 1943, 2051, 2297, 2897, 3533, 3651
MflI	RGATCY	4 cut(s)	1659, 2179, 2912, 3121
MhlI	GDGCHC	3 cut(s)	112, 969, 2759
MlsI	TGGCCA	1 cut(s)	2361
MluNI	TGGCCA	1 cut(s)	2361
MlyI	GAGTC	5 cut(s)	34, 1825, 2418, 2809, 3070
MmeI	TCCRAC	2 cut(s)	1861, 3573
Mox20I	TGGCCA	1 cut(s)	2361
Mph1103I	ATGCAT	1 cut(s)	2036
MscI	TGGCCA	1 cut(s)	2361
MslI	CAYNNNNRTG	3 cut(s)	425, 2073, 3669
Msp20I	TGGCCA	1 cut(s)	2361
MspCI	CTTAAG	1 cut(s)	293
MspI	CCGG	4 cut(s)	39, 1975, 2459, 3542
MspR9I	CCNGG	3 cut(s)	324, 1536, 2460
MssI	GTTTAAAC	1 cut(s)	1764
Mva1269I	GAATGC	1 cut(s)	3607
MvaI	CCWGG	2 cut(s)	324, 1536
MvnI	CGCG	1 cut(s)	2845
NciI	CCSGG	1 cut(s)	2460
NcoI	CCATGG	2 cut(s)	1364, 2167
NdeI	CATATG	1 cut(s)	2418
NheI	GCTAGC	1 cut(s)	350
NlaIV	GGNNCC	5 cut(s)	1287, 2181, 2758, 3091, 3540
NmuCI	GTSAC	4 cut(s)	1080, 1708, 2396, 2668
NsbI	TGCGCA	3 cut(s)	258, 491, 2528
NsiI	ATGCAT	1 cut(s)	2036
NspI	RCATGY	3 cut(s)	281, 2955, 3446
PaeI	GCATGC	2 cut(s)	281, 2955
PagI	TCATGA	1 cut(s)	367
PaqCI	CACCTGC	1 cut(s)	2621
PctI	GAATGC	1 cut(s)	3607
PfeI	GAWTC	8 cut(s)	14, 566, 1024, 1172, 2518, 2991, 3338, 3545
PflMI	CCANNNNNTGG	3 cut(s)	733, 1490, 3559
PleI	GAGTC	5 cut(s)	33, 1824, 2417, 2808, 3070
PmeI	GTTTAAAC	1 cut(s)	1764
PpsI	GAGTC	5 cut(s)	33, 1824, 2417, 2808, 3070
PpuMI	RGGWCCY	1 cut(s)	2872
PshAI	GACNNNNGTC	1 cut(s)	1078
PshBI	ATTAAT	1 cut(s)	408
PsiI	TTATAA	1 cut(s)	3588
Psp124BI	GAGCTC	1 cut(s)	969
Psp1406I	AACGTT	1 cut(s)	3630
Psp5II	RGGWCCY	1 cut(s)	2872
Psp6I	CCWGG	2 cut(s)	322, 1534
PspEI	GGTNACC	1 cut(s)	1406
PspFI	CCCAGC	1 cut(s)	3182
PspGI	CCWGG	2 cut(s)	322, 1534
PspN4I	GGNNCC	5 cut(s)	1287, 2181, 2758, 3091, 3540
PspPI	GGNCC	3 cut(s)	1180, 2872, 3492
PspPPI	RGGWCCY	1 cut(s)	2872
PstI	CTGCAG	1 cut(s)	388
PsuI	RGATCY	4 cut(s)	1659, 2179, 2912, 3121
RsaI	GTAC	6 cut(s)	31, 743, 850, 1051, 2608, 3324
RsaNI	GTAC	6 cut(s)	30, 742, 849, 1050, 2607, 3323
RseI	CAYNNNNRTG	3 cut(s)	425, 2073, 3669
SacI	GAGCTC	1 cut(s)	969
SalI	GTCGAC	1 cut(s)	3658
Sau96I	GGNCC	3 cut(s)	1180, 2872, 3492
SchI	GAGTC	5 cut(s)	34, 1825, 2418, 2809, 3070
ScrFI	CCNGG	3 cut(s)	324, 1536, 2460
SduI	GDGCHC	3 cut(s)	112, 969, 2759
SfaNI	GCATC	6 cut(s)	109, 429, 517, 2378, 2797, 3249
SfcI	CTRYAG	5 cut(s)	384, 1908, 2244, 2749, 3526
SinI	GGWCC	2 cut(s)	1180, 2872
SmiMI	CAYNNNNRTG	3 cut(s)	425, 2073, 3669
SmlI	CTYRAG	5 cut(s)	293, 707, 1034, 1134, 3269
SmoI	CTYRAG	5 cut(s)	293, 707, 1034, 1134, 3269
SphI	GCATGC	2 cut(s)	281, 2955
SsiI	CCGC	4 cut(s)	477, 502, 1420, 1747
SspI	AATATT	3 cut(s)	715, 1609, 1685
SspMI	CTAG	6 cut(s)	210, 306, 351, 1785, 1920, 3572
SstI	GAGCTC	1 cut(s)	969
StyD4I	CCNGG	3 cut(s)	322, 1534, 2458
StyI	CCWWGG	4 cut(s)	1364, 2167, 2428, 2829
TaiI	ACGT	4 cut(s)	2194, 2368, 2627, 3633
TaqI	TCGA	8 cut(s)	336, 447, 2344, 2694, 3160, 3327, 3478, 3659
TatI	WGTACW	1 cut(s)	848
TauI	GCSGC	1 cut(s)	479
TfiI	GAWTC	8 cut(s)	14, 566, 1024, 1172, 2518, 2991, 3338, 3545
TseFI	GTSAC	4 cut(s)	1080, 1708, 2396, 2668
TseI	GCWGC	9 cut(s)	47, 50, 53, 893, 1009, 1616, 2156, 2716, 3378
Tsp45I	GTSAC	4 cut(s)	1080, 1708, 2396, 2668
TspGWI	ACGGA	3 cut(s)	1090, 1262, 2687
Van91I	CCANNNNNTGG	3 cut(s)	733, 1490, 3559
Vha464I	CTTAAG	1 cut(s)	293
VpaK11BI	GGWCC	2 cut(s)	1180, 2872
VspI	ATTAAT	1 cut(s)	408
XagI	CCTNNNNNAGG	1 cut(s)	3499
XapI	RAATTY	2 cut(s)	1219, 2597
XbaI	TCTAGA	1 cut(s)	3571
XceI	RCATGY	3 cut(s)	281, 2955, 3446
XcmI	CCANNNNNNNNNTGG	2 cut(s)	3115, 3556
XmiI	GTMKAC	2 cut(s)	2748, 3659
XspI	CTAG	6 cut(s)	210, 306, 351, 1785, 1920, 3572
Zsp2I	ATGCAT	1 cut(s)	2036

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.