Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000962

Physical Location & Seq

Genomic Coordinates Reverse (-)

34377569 .. 34385774

Gene Structure 8206 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG331600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1713 bp

ATGGTCCTTTCCCGTGGACTAAAGAACTGGAGTTTCCCCATGCTCATGGTTCGTCTTACCCATAGTCAAGGAAAAGAAACTGTGGACTCAGCAAGAGTTGCTAATGTTTTGGAAAATAAACGGAATGCTCTTGGTATCTTAAAGAAGAAGTTCCCAGATACTCCAGTGTTGGCTTTAACAGCTACAGCAACAGCTAGTGTAAAAGAAGATGTTGTGCAAGCTCTTGGTCTTGTAAACTGTATTGTTTTCCGGCAAAGTTTTAATCGCCCAAATCTATGGTATTCAGTTATTCCCAAGACAAAGAAATGCATAGAAGATATTGACAAGTTCATTAAAGAAAATCACTATGATGAAAGTGGAATAATATATTGTCTGTCAAGAATGGACTGTGAAAAGGTTGCTGAAAAATTACAGGAATGTGGGCATAAAGCAGCATTTTATCATGGTAGTATGGATCCTGCTCAACGTGCCTTTGTCCAGAAGCAGTGGAGTAAAGATGAAGTCAACATTATCTGTGCTACAGTGGCATTTGGAATGGGCATAAACAAGCCTGATGTGCGCTTTGTAATTCATCACTCTCTCCCAAAGTCTATTGAAGGCTATCATCAGGAATGTGGTCGAGCTGGTAGAGATGGCCAACGTGCATCTTGTGTGTTGTATTACAGTTACAGTGACTATATCAAGAGTTTCATTGAGAAGGATGTCACGCAGATAGCAAAGCAATTGGTTGAACTGGTGAAATTAGCGGGGCAGCAGTGTTCATCAGCTCATATTTTAGAAGTGTACAGGGGCTCCTTAAGCCAATTTGTCAAGAAACACAGGCATCAGACTTTGAGTCTGCATGGAGCAGGAAAACATCTACCCAAGGGAGAAGCTTCCCGTGTATTACGCCATCTTGTTACAGAGGACTTGCTTGTGGAGGAAGTGAAGAAAAGTGATGTTTATGGATCTGTATCATCAATACTAAAGGTTAATGAGTTCAAAGCATGCGAACTTTTCTCTGGCCGGAAGACAATTATGTTAAGATTCCCTTCCTCTGTAAAAGCTTCTAAGCAGTGGAACTCTGAAGTGATTTCAACTAAAGGTTCATTGACATCTGAGAAGCTGATTCCTCCACAAATTGGCACCGGACAACCTCAGTCCAATGGAGATGTGGAGCTCTCTACCCAATTATTTATTTCTTTGAAAATGCTTCGAACTACTCTCATAAGGGAAGCTGATGATAGGGTCATGGCACACCACATATTTGGGAATAAGACGTTGAAAGATTTGAGCTCCATAATTCCCAGAACGAAGGAGGAACTCCTGGAAATATATGGGATTAACAAGGGTAAGGTGACAAAATATGGAGATCGGATACTCGAAACCATCGAATCTACCATCAAGGATTACTACAGGACATACAAAAACAGCAGCAGTAGCAATGACAGTAATGAGGGAAAGAGGAAAAGAGACGGTAACAAAGATCAAAATGGACATGTAGAGGATGATGACTTCACCAAAAGCACTGATCAATCAAAGAAAAGGCCGTCAAAAAGGCAGGGCAAAACTATTGAAGACTATAGTTATCTGGAGCCCGATTTCAACCAAATAGTGGATGATGATCTAGACTTGTATGGTTATAATTTTGAAGTGAATGCTTCAGCTACAAAGACTGTTCAGAAGGTTGGTGGAAGAGTGCTTCCGCAATGGTCGACGTATGGAAATGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005911 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009266 GO:0009378 GO:0009409 GO:0009506 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0032392 GO:0032508 GO:0032870 GO:0033554 GO:0033993 GO:0034641 GO:0042221 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0055044 GO:0070035 GO:0070417 GO:0070887 GO:0071103 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097305 GO:0097306 GO:0140097 GO:1901360 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko03018 ko03440 ko03460 map03018 map03440 map03460

Pfam Domains

Protein Families

DEAD HRDC Helicase_C RQC RecQ_Zn_bind

Protein Analysis

570

Amino Acids

64.3

Weight (kDa)

9.1

Isoelectric Point (pI)

39.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	105 - 212	3.1e-20	Helicase conserved C-terminal domain
RQC	PF09382	232 - 348	5.1e-20	RQC domain
HRDC	PF00570	390 - 457	4.7e-12	HRDC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10930
fragaria_vesca	FvH4_5g28920 FvH4_5g28920
malus_domestica	MD02G1262900.v1.1 MD07G1056800.v1.1 MD07G1057400.v1.1
prunus_persica	Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1
pyrus_communis	pycom02g22480 pycom02g22490 pycom02g22530 pycom07g04380
rosa_chinensis	RchiOBHm_Chr2g0101731 RchiOBHm_Chr2g0146651 RchiOBHm_Chr3g0471841 RchiOBHm_Chr4g0402091 RchiOBHm_Chr5g0019321 RchiOBHm_Chr7g0221231
rosa_laevigata	RLG00000002168 RLG00000008436
rosa_multiflora	Rmu_co8338979.1_g000001 Rmu_co8389917.1_g000001 Rmu_sc0000212.1_g000013 Rmu_sc0000324.1_g000016 Rmu_sc0000518.1_g000001 Rmu_sc0000808.1_g000043 Rmu_sc0002206.1_g000018 Rmu_sc0002551.1_g000024 Rmu_sc0004296.1_g000023 Rmu_sc0009806.1_g000017 Rmu_sc0032411.1_g000001 Rmu_ssc0000291.1_g000025
rosa_roxburghii	Rroxscaffold_176G00431210 Rroxscaffold_1G00026280 Rroxscaffold_3G00238540 Rroxscaffold_4G00313160 Rroxscaffold_4G00330040 Rroxscaffold_5G00342230 Rroxscaffold_5G00352050
rosa_rugosa	Rorug07G0201600 Rorug07G0253300
rosa_samantha	Rh1BG131100 Rh1CG101400 Rh2BG215600 Rh2CG271000 Rh4DG065200 Rh4DG134600 Rh5AG275200 Rh5AG434000 Rh7AG340500 Rh7BG172400 Rh7BG331600 Rh7BG331700 Rh7CG358400 Rh7DG335700 Rh7DG335800 Rh7DG339200 Rh7DG339300
rosa_wichuraiana	Rw6G023870 Rw7G028980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1623
AccB1I	GGYRCC	1 cut(s)	1124
AccB7I	CCANNNNNTGG	2 cut(s)	1121, 1594
AccI	GTMKAC	1 cut(s)	1694
AciI	CCGC	2 cut(s)	746, 1685
AclWI	GGATC	3 cut(s)	449, 462, 955
AcoI	YGGCCR	2 cut(s)	634, 1003
AcuI	CTGAAG	2 cut(s)	1086, 1626
AfaI	GTAC	1 cut(s)	785
AfiI	CCNNNNNNNGG	2 cut(s)	1121, 1594
AflII	CTTAAG	1 cut(s)	796
AflIII	ACRYGT	1 cut(s)	1477
AgsI	TTSAA	9 cut(s)	596, 731, 982, 1077, 1186, 1264, 1556, 1585, 1631
AhdI	GACNNNNNGTC	1 cut(s)	834
AjnI	CCWGG	1 cut(s)	1305
Alw21I	GWGCWC	2 cut(s)	1161, 1277
Alw26I	GTCTC	1 cut(s)	1446
AlwI	GGATC	3 cut(s)	449, 462, 955
AoxI	GGCC	3 cut(s)	634, 1003, 1526
ApeKI	GCWGC	3 cut(s)	431, 751, 1413
Asp700I	GAANNNNTTC	1 cut(s)	149
AspLEI	GCGC	1 cut(s)	561
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	3 cut(s)	748, 1348, 1489
AsuII	TTCGAA	1 cut(s)	1195
AvaII	GGWCC	1 cut(s)	4
BaeI	ACNNNNGTAYC	2 cut(s)	150, 183
BalI	TGGCCA	1 cut(s)	636
BamHI	GGATCC	1 cut(s)	454
BanI	GGYRCC	1 cut(s)	1124
BanII	GRGCYC	4 cut(s)	794, 1161, 1277, 1578
BbsI	GAAGAC	2 cut(s)	1016, 1563
Bbv12I	GWGCWC	2 cut(s)	1161, 1277
BbvI	GCAGC	3 cut(s)	443, 763, 1425
BccI	CCATC	4 cut(s)	626, 900, 1376, 1388
BceAI	ACGGC	1 cut(s)	1513
BciT130I	CCWGG	1 cut(s)	1307
BciVI	GTATCC	1 cut(s)	1350
BclI	TGATCA	1 cut(s)	1510
BcoDI	GTCTC	1 cut(s)	1446
BfaI	CTAG	2 cut(s)	195, 1607
BfmI	CTRYAG	4 cut(s)	183, 519, 1393, 1561
BfrI	CTTAAG	1 cut(s)	796
BfuI	GTATCC	1 cut(s)	1350
BisI	GCNGC	3 cut(s)	432, 752, 1414
BlsI	GCNGC	3 cut(s)	433, 753, 1415
Bme1390I	CCNGG	1 cut(s)	1307
Bme18I	GGWCC	1 cut(s)	4
BmeRI	GACNNNNNGTC	1 cut(s)	834
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	4 cut(s)	456, 793, 1126, 1575
BmrFI	CCNGG	1 cut(s)	1307
BmsI	GCATC	2 cut(s)	653, 832
BpiI	GAAGAC	2 cut(s)	1016, 1563
BpmI	CTGGAG	3 cut(s)	49, 147, 1592
Bpu14I	TTCGAA	1 cut(s)	1195
BsaBI	GATNNNNATC	2 cut(s)	952, 1602
BsaJI	CCNNGG	2 cut(s)	13, 864
BsaWI	WCCGGW	1 cut(s)	1127
BsaXI	ACNNNNNCTCC	2 cut(s)	776, 806
Bsc4I	CCNNNNNNNGG	2 cut(s)	1121, 1594
Bse1I	ACTGG	3 cut(s)	32, 164, 738
Bse3DI	GCAATG	2 cut(s)	1429, 1694
Bse8I	GATNNNNATC	2 cut(s)	952, 1602
BseBI	CCWGG	1 cut(s)	1307
BseDI	CCNNGG	2 cut(s)	13, 864
BseGI	GGATG	3 cut(s)	706, 1492, 1603
BseJI	GATNNNNATC	2 cut(s)	952, 1602
BseLI	CCNNNNNNNGG	2 cut(s)	1121, 1594
BseMI	GCAATG	2 cut(s)	1429, 1694
BseMII	CTCAG	3 cut(s)	102, 1089, 1151
BseNI	ACTGG	3 cut(s)	32, 164, 738
BseXI	GCAGC	3 cut(s)	443, 763, 1425
BshFI	GGCC	3 cut(s)	636, 1005, 1528
BshNI	GGYRCC	1 cut(s)	1124
BsiHKAI	GWGCWC	2 cut(s)	1161, 1277
BsiSI	CCGG	3 cut(s)	250, 1006, 1128
BslI	CCNNNNNNNGG	2 cut(s)	1121, 1594
BsmAI	GTCTC	1 cut(s)	1446
BsmBI	CGTCTC	1 cut(s)	1446
BsmI	GAATGC	2 cut(s)	130, 1642
BsnI	GGCC	3 cut(s)	636, 1005, 1528
Bsp119I	TTCGAA	1 cut(s)	1195
Bsp1286I	GDGCHC	4 cut(s)	794, 1161, 1277, 1578
Bsp1407I	TGTACA	1 cut(s)	783
Bsp143I	GATC	6 cut(s)	454, 947, 1351, 1465, 1510, 1603
BspACI	CCGC	2 cut(s)	746, 1685
BspANI	GGCC	3 cut(s)	636, 1005, 1528
BspCNI	CTCAG	3 cut(s)	101, 1090, 1150
BspLI	GGNNCC	4 cut(s)	456, 793, 1126, 1575
BspPI	GGATC	3 cut(s)	449, 462, 955
BspT104I	TTCGAA	1 cut(s)	1195
BspT107I	GGYRCC	1 cut(s)	1124
BspTI	CTTAAG	1 cut(s)	796
BsrDI	GCAATG	2 cut(s)	1429, 1694
BsrGI	TGTACA	1 cut(s)	783
BsrI	ACTGG	3 cut(s)	32, 164, 738
BssECI	CCNNGG	2 cut(s)	13, 864
BssMI	GATC	6 cut(s)	454, 947, 1351, 1465, 1510, 1603
BssT1I	CCWWGG	1 cut(s)	864
Bst2UI	CCWGG	1 cut(s)	1307
Bst4CI	ACNGT	9 cut(s)	82, 239, 389, 523, 665, 671, 1430, 1457, 1657
Bst6I	CTCTTC	1 cut(s)	1669
BstAFI	CTTAAG	1 cut(s)	796
BstAPI	GCANNNNNTGC	1 cut(s)	98
BstAUI	TGTACA	1 cut(s)	783
BstBI	TTCGAA	1 cut(s)	1195
BstC8I	GCNNGC	2 cut(s)	219, 988
BstDEI	CTNAG	4 cut(s)	88, 1050, 1098, 1137
BstDSI	CCRYGG	1 cut(s)	13
BstF5I	GGATG	3 cut(s)	706, 1492, 1603
BstHHI	GCGC	1 cut(s)	561
BstKTI	GATC	6 cut(s)	457, 950, 1354, 1468, 1513, 1606
BstMAI	GTCTC	1 cut(s)	1446
BstMBI	GATC	6 cut(s)	454, 947, 1351, 1465, 1510, 1603
BstMWI	GCNNNNNNNGC	7 cut(s)	98, 179, 467, 524, 556, 798, 1419
BstNI	CCWGG	1 cut(s)	1307
BstNSI	RCATGY	2 cut(s)	990, 1481
BstSCI	CCNGG	1 cut(s)	1305
BstSFI	CTRYAG	4 cut(s)	183, 519, 1393, 1561
BstV1I	GCAGC	3 cut(s)	443, 763, 1425
BstV2I	GAAGAC	2 cut(s)	1016, 1563
BstX2I	RGATCY	2 cut(s)	454, 947
BstXI	CCANNNNNNTGG	3 cut(s)	46, 276, 1247
BstYI	RGATCY	2 cut(s)	454, 947
BsuI	GTATCC	1 cut(s)	1350
BsuRI	GGCC	3 cut(s)	636, 1005, 1528
BtgI	CCRYGG	1 cut(s)	13
BtsCI	GGATG	3 cut(s)	706, 1492, 1603
BtsI	GCAGTG	3 cut(s)	491, 761, 1061
BtsIMutI	CAGTG	7 cut(s)	171, 491, 528, 676, 761, 1061, 1506
Cac8I	GCNNGC	2 cut(s)	219, 988
CfoI	GCGC	1 cut(s)	561
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	1 cut(s)	784
CviAII	CATG	7 cut(s)	40, 46, 443, 842, 987, 1231, 1478
CviQI	GTAC	1 cut(s)	784
DdeI	CTNAG	4 cut(s)	88, 1050, 1098, 1137
DpnI	GATC	6 cut(s)	456, 949, 1353, 1467, 1512, 1605
DpnII	GATC	6 cut(s)	454, 947, 1351, 1465, 1510, 1603
DriI	GACNNNNNGTC	1 cut(s)	834
EaeI	YGGCCR	2 cut(s)	634, 1003
Eam1104I	CTCTTC	1 cut(s)	1669
Eam1105I	GACNNNNNGTC	1 cut(s)	834
EarI	CTCTTC	1 cut(s)	1669
Ecl136II	GAGCTC	2 cut(s)	1159, 1275
Eco130I	CCWWGG	1 cut(s)	864
Eco24I	GRGCYC	4 cut(s)	794, 1161, 1277, 1578
Eco47I	GGWCC	1 cut(s)	4
Eco53kI	GAGCTC	2 cut(s)	1159, 1275
Eco57I	CTGAAG	2 cut(s)	1086, 1626
EcoICRI	GAGCTC	2 cut(s)	1159, 1275
EcoRII	CCWGG	1 cut(s)	1305
EcoT14I	CCWWGG	1 cut(s)	864
EcoT22I	ATGCAT	1 cut(s)	311
EcoT38I	GRGCYC	4 cut(s)	794, 1161, 1277, 1578
ErhI	CCWWGG	1 cut(s)	864
Esp3I	CGTCTC	1 cut(s)	1446
FaeI	CATG	7 cut(s)	43, 49, 446, 845, 990, 1234, 1481
FalI	AAGNNNNNCTT	2 cut(s)	1015, 1047
FatI	CATG	7 cut(s)	39, 45, 442, 841, 986, 1230, 1477
FauI	CCCGC	1 cut(s)	739
FbaI	TGATCA	1 cut(s)	1510
FblI	GTMKAC	1 cut(s)	1694
Fnu4HI	GCNGC	3 cut(s)	432, 752, 1414
FokI	GGATG	3 cut(s)	713, 1499, 1610
FriOI	GRGCYC	4 cut(s)	794, 1161, 1277, 1578
Fsp4HI	GCNGC	3 cut(s)	432, 752, 1414
FspBI	CTAG	2 cut(s)	195, 1607
GlaI	GCGC	1 cut(s)	560
GluI	GCNGC	3 cut(s)	432, 752, 1414
GsuI	CTGGAG	3 cut(s)	49, 147, 1592
HaeIII	GGCC	3 cut(s)	636, 1005, 1528
HapII	CCGG	3 cut(s)	250, 1006, 1128
HhaI	GCGC	1 cut(s)	561
Hin1II	CATG	7 cut(s)	43, 49, 446, 845, 990, 1234, 1481
Hin6I	GCGC	1 cut(s)	559
HinP1I	GCGC	1 cut(s)	559
HincII	GTYRAC	2 cut(s)	505, 1695
HindII	GTYRAC	2 cut(s)	505, 1695
HindIII	AAGCTT	2 cut(s)	873, 1044
HinfI	GANTC	5 cut(s)	86, 835, 1026, 1108, 1373
HpaII	CCGG	3 cut(s)	250, 1006, 1128
HphI	GGTGA	3 cut(s)	748, 1348, 1489
Hpy166II	GTNNAC	6 cut(s)	17, 85, 235, 505, 784, 1695
Hpy188I	TCNGA	5 cut(s)	828, 1066, 1099, 1356, 1662
Hpy188III	TCNNGA	7 cut(s)	378, 478, 608, 682, 811, 1571, 1607
Hpy8I	GTNNAC	6 cut(s)	17, 85, 235, 505, 784, 1695
Hpy99I	CGWCG	1 cut(s)	1699
HpyAV	CCTTC	5 cut(s)	590, 691, 1041, 1288, 1657
HpyCH4III	ACNGT	9 cut(s)	82, 239, 389, 523, 665, 671, 1430, 1457, 1657
HpyCH4IV	ACGT	4 cut(s)	466, 640, 1259, 1697
HpyCH4V	TGCA	4 cut(s)	217, 309, 644, 841
HpyF10VI	GCNNNNNNNGC	7 cut(s)	98, 179, 467, 524, 556, 798, 1419
HpyF3I	CTNAG	4 cut(s)	88, 1050, 1098, 1137
HpySE526I	ACGT	4 cut(s)	466, 640, 1259, 1697
Hsp92II	CATG	7 cut(s)	43, 49, 446, 845, 990, 1234, 1481
HspAI	GCGC	1 cut(s)	559
Ksp22I	TGATCA	1 cut(s)	1510
Kzo9I	GATC	6 cut(s)	454, 947, 1351, 1465, 1510, 1603
LmnI	GCTCC	5 cut(s)	797, 845, 1156, 1280, 1573
Lsp1109I	GCAGC	3 cut(s)	443, 763, 1425
LweI	GCATC	2 cut(s)	653, 832
MaeI	CTAG	2 cut(s)	195, 1607
MaeII	ACGT	4 cut(s)	466, 640, 1259, 1697
MaeIII	GTNAC	6 cut(s)	665, 671, 703, 898, 1336, 1457
MalI	GATC	6 cut(s)	456, 949, 1353, 1467, 1512, 1605
MboI	GATC	6 cut(s)	454, 947, 1351, 1465, 1510, 1603
MboII	GAAGA	7 cut(s)	157, 218, 326, 940, 1021, 1568, 1686
MfeI	CAATTG	1 cut(s)	722
MflI	RGATCY	2 cut(s)	454, 947
MhlI	GDGCHC	4 cut(s)	794, 1161, 1277, 1578
MlsI	TGGCCA	1 cut(s)	636
MluNI	TGGCCA	1 cut(s)	636
MlyI	GAGTC	2 cut(s)	80, 844
MnlI	CCTC	9 cut(s)	898, 913, 1045, 1122, 1146, 1291, 1429, 1437, 1477
Mox20I	TGGCCA	1 cut(s)	636
Mph1103I	ATGCAT	1 cut(s)	311
MroXI	GAANNNNTTC	1 cut(s)	149
MscI	TGGCCA	1 cut(s)	636
MseI	TTAA	8 cut(s)	140, 176, 261, 333, 797, 972, 1022, 1323
MslI	CAYNNNNRTG	2 cut(s)	44, 348
Msp20I	TGGCCA	1 cut(s)	636
MspCI	CTTAAG	1 cut(s)	796
MspI	CCGG	3 cut(s)	250, 1006, 1128
MspR9I	CCNGG	1 cut(s)	1307
MunI	CAATTG	1 cut(s)	722
Mva1269I	GAATGC	2 cut(s)	130, 1642
MvaI	CCWGG	1 cut(s)	1307
MwoI	GCNNNNNNNGC	7 cut(s)	98, 179, 467, 524, 556, 798, 1419
NdeII	GATC	6 cut(s)	454, 947, 1351, 1465, 1510, 1603
NlaIII	CATG	7 cut(s)	43, 49, 446, 845, 990, 1234, 1481
NlaIV	GGNNCC	4 cut(s)	456, 793, 1126, 1575
NmuCI	GTSAC	3 cut(s)	671, 703, 1336
NsiI	ATGCAT	1 cut(s)	311
NspI	RCATGY	2 cut(s)	990, 1481
NspV	TTCGAA	1 cut(s)	1195
PaeI	GCATGC	1 cut(s)	990
PciI	ACATGT	1 cut(s)	1477
PcsI	WCGNNNNNNNCGW	1 cut(s)	1368
PctI	GAATGC	2 cut(s)	130, 1642
PdmI	GAANNNNTTC	1 cut(s)	149
PfeI	GAWTC	3 cut(s)	1026, 1108, 1373
PflMI	CCANNNNNTGG	2 cut(s)	1121, 1594
PfoI	TCCNGGA	1 cut(s)	1305
PkrI	GCNGC	3 cut(s)	433, 753, 1415
PleI	GAGTC	2 cut(s)	80, 843
PpsI	GAGTC	2 cut(s)	80, 843
PscI	ACATGT	1 cut(s)	1477
PsiI	TTATAA	1 cut(s)	1623
Psp124BI	GAGCTC	2 cut(s)	1161, 1277
Psp6I	CCWGG	1 cut(s)	1305
PspGI	CCWGG	1 cut(s)	1305
PspN4I	GGNNCC	4 cut(s)	456, 793, 1126, 1575
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	2 cut(s)	454, 947
RsaI	GTAC	1 cut(s)	785
RsaNI	GTAC	1 cut(s)	784
RseI	CAYNNNNRTG	2 cut(s)	44, 348
SacI	GAGCTC	2 cut(s)	1161, 1277
SalI	GTCGAC	1 cut(s)	1693
SaqAI	TTAA	8 cut(s)	140, 176, 261, 333, 797, 972, 1022, 1323
SatI	GCNGC	3 cut(s)	432, 752, 1414
Sau3AI	GATC	6 cut(s)	454, 947, 1351, 1465, 1510, 1603
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	2 cut(s)	80, 844
ScrFI	CCNGG	1 cut(s)	1307
SduI	GDGCHC	4 cut(s)	794, 1161, 1277, 1578
SfaNI	GCATC	2 cut(s)	653, 832
SfcI	CTRYAG	4 cut(s)	183, 519, 1393, 1561
SfuI	TTCGAA	1 cut(s)	1195
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	2 cut(s)	44, 348
SmlI	CTYRAG	1 cut(s)	796
SmoI	CTYRAG	1 cut(s)	796
SphI	GCATGC	1 cut(s)	990
SsiI	CCGC	2 cut(s)	746, 1685
SspMI	CTAG	2 cut(s)	195, 1607
SstI	GAGCTC	2 cut(s)	1161, 1277
StyD4I	CCNGG	1 cut(s)	1305
StyI	CCWWGG	1 cut(s)	864
TaaI	ACNGT	9 cut(s)	82, 239, 389, 523, 665, 671, 1430, 1457, 1657
TaiI	ACGT	4 cut(s)	469, 643, 1262, 1700
TaqI	TCGA	5 cut(s)	619, 1195, 1362, 1371, 1694
TatI	WGTACW	1 cut(s)	783
TfiI	GAWTC	3 cut(s)	1026, 1108, 1373
Tru1I	TTAA	8 cut(s)	140, 176, 261, 333, 797, 972, 1022, 1323
Tru9I	TTAA	8 cut(s)	140, 176, 261, 333, 797, 972, 1022, 1323
TscAI	CASTG	7 cut(s)	171, 491, 528, 676, 761, 1061, 1513
TseFI	GTSAC	3 cut(s)	671, 703, 1336
TseI	GCWGC	3 cut(s)	431, 751, 1413
Tsp45I	GTSAC	3 cut(s)	671, 703, 1336
TspDTI	ATGAA	7 cut(s)	319, 366, 513, 560, 679, 750, 1077
TspGWI	ACGGA	1 cut(s)	136
TspRI	CASTG	7 cut(s)	171, 491, 528, 676, 761, 1061, 1513
Van91I	CCANNNNNTGG	2 cut(s)	1121, 1594
Vha464I	CTTAAG	1 cut(s)	796
VpaK11BI	GGWCC	1 cut(s)	4
XbaI	TCTAGA	1 cut(s)	1606
XceI	RCATGY	2 cut(s)	990, 1481
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1150
XmiI	GTMKAC	1 cut(s)	1694
XmnI	GAANNNNTTC	1 cut(s)	149
XspI	CTAG	2 cut(s)	195, 1607
Zsp2I	ATGCAT	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.