Rmu_sc0009806.1_g000017

ATP-dependent DNA helicase Q-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009806.1
Physical Location & Seq
Reverse (-)
41636 .. 44012
2377 bp
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UTR
Exon/CDS
Intron
Rmu_sc0009806.1_g000017.1.cds

Sequence Viewer

Length: 468 bp
atgtctgcaactgctgatattggaaggtacagggattactttaaagatcatggcggggatgaatgggtggaagtgcttgcaatccctaactctggccagaaaatcgtttttcagaaaaggataggactttgcccagaagctgcaaatcacttgcaagaaatgaaggacatgctaattgccatatcaaatgaactgcttgatgatgtcaatgaactcagtccaaagaaaatagagaagcttctccaagatagggaaattgcgaaacatctctctcttcctccagtcaagctacactgcagtatgcttgctgaggatgccatcaaggcagctgttaaagactatcaaacaaagctggctaatgaaggattgcttatcatctttgcctacaagagagcttctgcaagagcaaatgaaggtgcattaaaggaaagcagtagtaatctatgtagtttaggtcttcctagctag

Protein Analysis

155

Amino Acids

17.15

Weight (kDa)

6.09

Isoelectric Point (pI)

33.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 54
AcoI YGGCCR 1 cut(s) 94
AfaI GTAC 1 cut(s) 29
AfiI CCNNNNNNNGG 2 cut(s) 92, 250
AluBI AGCT 7 cut(s) 140, 238, 289, 329, 352, 395, 465
AluI AGCT 7 cut(s) 140, 238, 289, 329, 352, 395, 465
AlwNI CAGNNNCTG 1 cut(s) 140
AoxI GGCC 1 cut(s) 94
ApeKI GCWGC 2 cut(s) 140, 326
BalI TGGCCA 1 cut(s) 96
BbsI GAAGAC 1 cut(s) 449
BbvCI CCTCAGC 1 cut(s) 309
BbvI GCAGC 2 cut(s) 127, 338
BccI CCATC 1 cut(s) 326
BfaI CTAG 2 cut(s) 462, 466
BfmI CTRYAG 1 cut(s) 295
BglI GCCNNNNNGGC 1 cut(s) 323
BisI GCNGC 2 cut(s) 141, 327
BlsI GCNGC 2 cut(s) 142, 328
BmsI GCATC 1 cut(s) 304
BpiI GAAGAC 1 cut(s) 449
BpmI CTGGAG 1 cut(s) 264
Bpu10I CCTNAGC 1 cut(s) 309
Bsc4I CCNNNNNNNGG 2 cut(s) 92, 250
Bse1I ACTGG 1 cut(s) 281
BseGI GGATG 2 cut(s) 64, 319
BseLI CCNNNNNNNGG 2 cut(s) 92, 250
BseMII CTCAG 2 cut(s) 229, 300
BseNI ACTGG 1 cut(s) 281
BseXI GCAGC 2 cut(s) 127, 338
BshFI GGCC 1 cut(s) 96
BslI CCNNNNNNNGG 2 cut(s) 92, 250
BsnI GGCC 1 cut(s) 96
Bsp143I GATC 1 cut(s) 46
BspACI CCGC 1 cut(s) 54
BspANI GGCC 1 cut(s) 96
BspCNI CTCAG 2 cut(s) 228, 301
BspMAI CTGCAG 1 cut(s) 299
BsrI ACTGG 1 cut(s) 281
BssMI GATC 1 cut(s) 46
Bst6I CTCTTC 1 cut(s) 279
BstC8I GCNNGC 3 cut(s) 78, 306, 354
BstDEI CTNAG 2 cut(s) 215, 309
BstF5I GGATG 2 cut(s) 64, 319
BstKTI GATC 1 cut(s) 49
BstMBI GATC 1 cut(s) 46
BstMWI GCNNNNNNNGC 2 cut(s) 314, 323
BstNSI RCATGY 1 cut(s) 172
BstSFI CTRYAG 1 cut(s) 295
BstV1I GCAGC 2 cut(s) 127, 338
BstV2I GAAGAC 1 cut(s) 449
BsuRI GGCC 1 cut(s) 96
BtsCI GGATG 2 cut(s) 64, 319
BtsI GCAGTG 1 cut(s) 292
BtsIMutI CAGTG 1 cut(s) 292
Cac8I GCNNGC 3 cut(s) 78, 306, 354
CaiI CAGNNNCTG 1 cut(s) 140
Csp6I GTAC 1 cut(s) 28
CviAII CATG 2 cut(s) 50, 169
CviJI RGCY 9 cut(s) 96, 140, 238, 289, 329, 352, 356, 395, 465
CviKI_1 RGCY 9 cut(s) 96, 140, 238, 289, 329, 352, 356, 395, 465
CviQI GTAC 1 cut(s) 28
DdeI CTNAG 2 cut(s) 215, 309
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
DraI TTTAAA 1 cut(s) 43
EaeI YGGCCR 1 cut(s) 94
Eam1104I CTCTTC 1 cut(s) 279
EarI CTCTTC 1 cut(s) 279
FaeI CATG 2 cut(s) 53, 172
FaiI YATR 5 cut(s) 51, 170, 182, 302, 445
FalI AAGNNNNNCTT 2 cut(s) 354, 386
FatI CATG 2 cut(s) 49, 168
FauI CCCGC 1 cut(s) 47
Fnu4HI GCNGC 2 cut(s) 141, 327
FokI GGATG 2 cut(s) 71, 326
Fsp4HI GCNGC 2 cut(s) 141, 327
FspBI CTAG 2 cut(s) 462, 466
GluI GCNGC 2 cut(s) 141, 327
GsuI CTGGAG 1 cut(s) 264
HaeIII GGCC 1 cut(s) 96
Hin1II CATG 2 cut(s) 53, 172
HindIII AAGCTT 1 cut(s) 236
Hpy188I TCNGA 1 cut(s) 114
HpyAV CCTTC 4 cut(s) 18, 157, 356, 407
HpyCH4V TGCA 7 cut(s) 8, 80, 143, 154, 297, 401, 419
HpyF10VI GCNNNNNNNGC 2 cut(s) 314, 323
HpyF3I CTNAG 2 cut(s) 215, 309
Hsp92II CATG 2 cut(s) 53, 172
Kzo9I GATC 1 cut(s) 46
LpnPI CCDG 6 cut(s) 16, 78, 110, 147, 294, 338
Lsp1109I GCAGC 2 cut(s) 127, 338
LweI GCATC 1 cut(s) 304
MaeI CTAG 2 cut(s) 462, 466
MalI GATC 1 cut(s) 48
MboI GATC 1 cut(s) 46
MboII GAAGA 2 cut(s) 266, 449
MlsI TGGCCA 1 cut(s) 96
MluCI AATT 2 cut(s) 174, 255
MluNI TGGCCA 1 cut(s) 96
MnlI CCTC 2 cut(s) 288, 304
Mox20I TGGCCA 1 cut(s) 96
MscI TGGCCA 1 cut(s) 96
MseI TTAA 3 cut(s) 42, 333, 422
Msp20I TGGCCA 1 cut(s) 96
MspA1I CMGCKG 1 cut(s) 329
MwoI GCNNNNNNNGC 2 cut(s) 314, 323
NdeII GATC 1 cut(s) 46
NlaIII CATG 2 cut(s) 53, 172
NspI RCATGY 1 cut(s) 172
PkrI GCNGC 2 cut(s) 142, 328
PstI CTGCAG 1 cut(s) 299
PstNI CAGNNNCTG 1 cut(s) 140
PvuII CAGCTG 1 cut(s) 329
RsaI GTAC 1 cut(s) 29
RsaNI GTAC 1 cut(s) 28
SaqAI TTAA 3 cut(s) 42, 333, 422
SatI GCNGC 2 cut(s) 141, 327
Sau3AI GATC 1 cut(s) 46
SfaNI GCATC 1 cut(s) 304
SfcI CTRYAG 1 cut(s) 295
Sse9I AATT 2 cut(s) 174, 255
SsiI CCGC 1 cut(s) 54
SspMI CTAG 2 cut(s) 462, 466
TasI AATT 2 cut(s) 174, 255
Tru1I TTAA 3 cut(s) 42, 333, 422
Tru9I TTAA 3 cut(s) 42, 333, 422
TscAI CASTG 1 cut(s) 299
TseI GCWGC 2 cut(s) 140, 326
TspDTI ATGAA 6 cut(s) 75, 176, 204, 225, 375, 426
TspRI CASTG 1 cut(s) 299
XceI RCATGY 1 cut(s) 172
XspI CTAG 2 cut(s) 462, 466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.