U5 small nuclear ribonucleoprotein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| BRR2_plug | PF21188 | 117 - 182 | 1.3e-09 | Pre-mRNA-splicing helicase BRR2 plug domain |
| Helicase_PWI | PF18149 | 267 - 377 | 5e-34 | N-terminal helicase PWI domain |
| ResIII | PF04851 | 506 - 680 | 5.8e-13 | Type III restriction enzyme, res subunit |
| DEAD | PF00270 | 507 - 684 | 1.4e-32 | DEAD/DEAH box helicase |
| Helicase_C | PF00271 | 800 - 883 | 1.3e-08 | Helicase conserved C-terminal domain |
| WHD_SNRNP200 | PF23445 | 914 - 990 | 2.7e-25 | Winged Helix-turn-helix domain |
| Sec63 | PF02889 | 1006 - 1309 | 5.6e-98 | Sec63 Brl domain |
| DEAD | PF00270 | 1352 - 1524 | 2.5e-30 | DEAD/DEAH box helicase |
| ResIII | PF04851 | 1352 - 1487 | 9.8e-10 | Type III restriction enzyme, res subunit |
| WHD_SNRNP200 | PF23445 | 1752 - 1833 | 5.9e-39 | Winged Helix-turn-helix domain |
| Sec63 | PF02889 | 1839 - 2157 | 6.5e-75 | Sec63 Brl domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 4 cut(s) | 1665, 1910, 2555, 2681 |
| AarI | CACCTGC | 1 cut(s) | 4377 |
| AatII | GACGTC | 1 cut(s) | 3343 |
| Acc16I | TGCGCA | 1 cut(s) | 5055 |
| Acc36I | ACCTGC | 3 cut(s) | 739, 1179, 4377 |
| AccB1I | GGYRCC | 1 cut(s) | 6000 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 6328 |
| AccBSI | CCGCTC | 1 cut(s) | 5947 |
| AccI | GTMKAC | 1 cut(s) | 4434 |
| AccII | CGCG | 3 cut(s) | 4896, 5209, 5759 |
| AclI | AACGTT | 1 cut(s) | 2873 |
| AcoI | YGGCCR | 1 cut(s) | 5991 |
| AcsI | RAATTY | 6 cut(s) | 647, 980, 1920, 2096, 3711, 5101 |
| AcuI | CTGAAG | 9 cut(s) | 945, 953, 1740, 1769, 4928, 5120, 5560, 5622, 5750 |
| AcyI | GRCGYC | 2 cut(s) | 283, 3340 |
| AdeI | CACNNNGTG | 1 cut(s) | 6392 |
| AfaI | GTAC | 8 cut(s) | 56, 894, 974, 3530, 4357, 5237, 5363, 6461 |
| AfeI | AGCGCT | 1 cut(s) | 5573 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 2585, 3098, 3581, 4000, 4389, 4657, 6328 |
| AflII | CTTAAG | 2 cut(s) | 2078, 4322 |
| AflIII | ACRYGT | 3 cut(s) | 2838, 3637, 4780 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 4920 |
| AjiI | CACGTC | 1 cut(s) | 2053 |
| AjuI | GAANNNNNNNTTGG | 8 cut(s) | 357, 389, 1320, 1352, 2775, 2807, 3497, 3529 |
| Alw21I | GWGCWC | 3 cut(s) | 1034, 1582, 3355 |
| Alw44I | GTGCAC | 1 cut(s) | 1030 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 1300, 5126, 6120, 6328 |
| Ama87I | CYCGRG | 1 cut(s) | 99 |
| Aor51HI | AGCGCT | 1 cut(s) | 5573 |
| AoxI | GGCC | 9 cut(s) | 188, 1099, 1946, 2055, 4339, 4590, 4603, 5663, 5991 |
| ApaLI | GTGCAC | 1 cut(s) | 1030 |
| ApoI | RAATTY | 6 cut(s) | 647, 980, 1920, 2096, 3711, 5101 |
| AseI | ATTAAT | 2 cut(s) | 4521, 5693 |
| AsuC2I | CCSGG | 3 cut(s) | 1198, 4623, 5179 |
| AsuII | TTCGAA | 1 cut(s) | 5686 |
| AsuNHI | GCTAGC | 2 cut(s) | 5153, 5902 |
| AvaI | CYCGRG | 1 cut(s) | 99 |
| AvaII | GGWCC | 7 cut(s) | 1303, 2233, 3060, 4181, 4466, 4873, 6245 |
| AxyI | CCTNAGG | 1 cut(s) | 192 |
| BaeGI | GKGCMC | 3 cut(s) | 800, 1034, 5042 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 6248, 6281 |
| BalI | TGGCCA | 1 cut(s) | 5993 |
| BamHI | GGATCC | 1 cut(s) | 6485 |
| BanI | GGYRCC | 1 cut(s) | 6000 |
| BanII | GRGCYC | 3 cut(s) | 3237, 3355, 3388 |
| BarI | GAAGNNNNNNTAC | 6 cut(s) | 5204, 5219, 5228, 5236, 5251, 5260 |
| BauI | CACGAG | 2 cut(s) | 2346, 3779 |
| BbsI | GAAGAC | 8 cut(s) | 344, 1059, 1328, 2055, 2376, 2650, 3756, 5583 |
| Bbv12I | GWGCWC | 3 cut(s) | 1034, 1582, 3355 |
| BbvCI | CCTCAGC | 1 cut(s) | 2315 |
| BceAI | ACGGC | 5 cut(s) | 3715, 4017, 4618, 5318, 5678 |
| BciVI | GTATCC | 5 cut(s) | 97, 2996, 3966, 4928, 6276 |
| BclI | TGATCA | 4 cut(s) | 532, 2656, 2767, 5428 |
| BcnI | CCSGG | 3 cut(s) | 1198, 4623, 5179 |
| BfmI | CTRYAG | 6 cut(s) | 117, 1625, 2110, 2689, 3260, 5963 |
| BfoI | RGCGCY | 4 cut(s) | 2891, 4007, 5575, 6495 |
| BfrI | CTTAAG | 2 cut(s) | 2078, 4322 |
| BfuAI | ACCTGC | 3 cut(s) | 739, 1179, 4377 |
| BfuI | GTATCC | 5 cut(s) | 97, 2996, 3966, 4928, 6276 |
| BglII | AGATCT | 3 cut(s) | 846, 3109, 4570 |
| BlpI | GCTNAGC | 2 cut(s) | 2884, 6096 |
| BmcAI | AGTACT | 2 cut(s) | 4357, 6461 |
| Bme18I | GGWCC | 7 cut(s) | 1303, 2233, 3060, 4181, 4466, 4873, 6245 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 4920 |
| BmeT110I | CYCGRG | 1 cut(s) | 99 |
| BmgBI | CACGTC | 1 cut(s) | 2053 |
| BmrI | ACTGGG | 3 cut(s) | 3231, 3989, 4311 |
| BmtI | GCTAGC | 2 cut(s) | 5157, 5906 |
| BmuI | ACTGGG | 3 cut(s) | 3231, 3989, 4311 |
| BoxI | GACNNNNGTC | 1 cut(s) | 4070 |
| BpiI | GAAGAC | 8 cut(s) | 344, 1059, 1328, 2055, 2376, 2650, 3756, 5583 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 5936, 5968 |
| BpmI | CTGGAG | 7 cut(s) | 759, 821, 1328, 1893, 4664, 5249, 6516 |
| Bpu10I | CCTNAGC | 3 cut(s) | 180, 2315, 4007 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 2884, 6096 |
| Bpu14I | TTCGAA | 1 cut(s) | 5686 |
| BpuEI | CTTGAG | 9 cut(s) | 437, 837, 3308, 4241, 4352, 5764, 5916, 6065, 6233 |
| BpuMI | CCSGG | 3 cut(s) | 1198, 4623, 5179 |
| Bsa29I | ATCGAT | 1 cut(s) | 150 |
| BsaAI | YACGTR | 1 cut(s) | 2841 |
| BsaBI | GATNNNNATC | 3 cut(s) | 3108, 3114, 3816 |
| BsaHI | GRCGYC | 2 cut(s) | 283, 3340 |
| BsaI | GGTCTC | 1 cut(s) | 1869 |
| BsaWI | WCCGGW | 2 cut(s) | 127, 1799 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 1752, 1782, 3899, 3929, 4247, 4277, 4904, 4934 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 2585, 3098, 3581, 4000, 4389, 4657, 6328 |
| Bse118I | RCCGGY | 2 cut(s) | 1489, 4750 |
| Bse21I | CCTNAGG | 1 cut(s) | 192 |
| Bse3DI | GCAATG | 7 cut(s) | 2033, 2304, 5814, 5884, 6108, 6197, 6347 |
| Bse8I | GATNNNNATC | 3 cut(s) | 3108, 3114, 3816 |
| BseCI | ATCGAT | 1 cut(s) | 150 |
| BseJI | GATNNNNATC | 3 cut(s) | 3108, 3114, 3816 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 2585, 3098, 3581, 4000, 4389, 4657, 6328 |
| BseMI | GCAATG | 7 cut(s) | 2033, 2304, 5814, 5884, 6108, 6197, 6347 |
| BseRI | GAGGAG | 8 cut(s) | 668, 728, 1094, 1097, 1178, 2936, 3245, 5505 |
| BseSI | GKGCMC | 3 cut(s) | 800, 1034, 5042 |
| BseYI | CCCAGC | 3 cut(s) | 1592, 2432, 5306 |
| BsgI | GTGCAG | 4 cut(s) | 447, 2523, 3618, 4082 |
| Bsh1236I | CGCG | 3 cut(s) | 4896, 5209, 5759 |
| BshFI | GGCC | 9 cut(s) | 190, 1101, 1948, 2057, 4341, 4592, 4605, 5665, 5993 |
| BshNI | GGYRCC | 1 cut(s) | 6000 |
| BshVI | ATCGAT | 1 cut(s) | 150 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1034, 1582, 3355 |
| BsiHKCI | CYCGRG | 1 cut(s) | 99 |
| BsiSI | CCGG | 8 cut(s) | 128, 1198, 1490, 1800, 4623, 4751, 5178, 6489 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 2585, 3098, 3581, 4000, 4389, 4657, 6328 |
| BsmBI | CGTCTC | 1 cut(s) | 341 |
| BsmI | GAATGC | 2 cut(s) | 1509, 2812 |
| BsnI | GGCC | 9 cut(s) | 190, 1101, 1948, 2057, 4341, 4592, 4605, 5665, 5993 |
| Bso31I | GGTCTC | 1 cut(s) | 1869 |
| BsoBI | CYCGRG | 1 cut(s) | 99 |
| Bsp119I | TTCGAA | 1 cut(s) | 5686 |
| Bsp1286I | GDGCHC | 7 cut(s) | 800, 1034, 1582, 3237, 3355, 3388, 5042 |
| Bsp1407I | TGTACA | 1 cut(s) | 5361 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 2884, 6096 |
| Bsp19I | CCATGG | 2 cut(s) | 1669, 3055 |
| BspANI | GGCC | 9 cut(s) | 190, 1101, 1948, 2057, 4341, 4592, 4605, 5665, 5993 |
| BspDI | ATCGAT | 1 cut(s) | 150 |
| BspFNI | CGCG | 3 cut(s) | 4896, 5209, 5759 |
| BspHI | TCATGA | 4 cut(s) | 109, 1933, 2365, 4174 |
| BspMAI | CTGCAG | 3 cut(s) | 1629, 3264, 5967 |
| BspMI | ACCTGC | 3 cut(s) | 739, 1179, 4377 |
| BspOI | GCTAGC | 2 cut(s) | 5157, 5906 |
| BspQI | GCTCTTC | 2 cut(s) | 897, 2923 |
| BspT104I | TTCGAA | 1 cut(s) | 5686 |
| BspT107I | GGYRCC | 1 cut(s) | 6000 |
| BspTI | CTTAAG | 2 cut(s) | 2078, 4322 |
| BspTNI | GGTCTC | 1 cut(s) | 1869 |
| BsrBI | CCGCTC | 1 cut(s) | 5947 |
| BsrDI | GCAATG | 7 cut(s) | 2033, 2304, 5814, 5884, 6108, 6197, 6347 |
| BsrFI | RCCGGY | 2 cut(s) | 1489, 4750 |
| BsrGI | TGTACA | 1 cut(s) | 5361 |
| BssAI | RCCGGY | 2 cut(s) | 1489, 4750 |
| BssNI | GRCGYC | 2 cut(s) | 283, 3340 |
| BssSI | CACGAG | 2 cut(s) | 2346, 3779 |
| BssT1I | CCWWGG | 7 cut(s) | 1327, 1418, 1669, 3055, 4233, 5401, 5524 |
| Bst2BI | CACGAG | 2 cut(s) | 2346, 3779 |
| BstACI | GRCGYC | 2 cut(s) | 283, 3340 |
| BstAFI | CTTAAG | 2 cut(s) | 2078, 4322 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 785, 5275, 6208 |
| BstAUI | TGTACA | 1 cut(s) | 5361 |
| BstBAI | YACGTR | 1 cut(s) | 2841 |
| BstBI | TTCGAA | 1 cut(s) | 5686 |
| BstDSI | CCRYGG | 5 cut(s) | 1669, 3055, 4600, 5207, 5334 |
| BstEII | GGTNACC | 1 cut(s) | 167 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2583 |
| BstFNI | CGCG | 3 cut(s) | 4896, 5209, 5759 |
| BstH2I | RGCGCY | 4 cut(s) | 2891, 4007, 5575, 6495 |
| BstNSI | RCATGY | 7 cut(s) | 35, 748, 1136, 2489, 3641, 4784, 5941 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 4070 |
| BstPI | GGTNACC | 1 cut(s) | 167 |
| BstSFI | CTRYAG | 6 cut(s) | 117, 1625, 2110, 2689, 3260, 5963 |
| BstSLI | GKGCMC | 3 cut(s) | 800, 1034, 5042 |
| BstUI | CGCG | 3 cut(s) | 4896, 5209, 5759 |
| BstV2I | GAAGAC | 8 cut(s) | 344, 1059, 1328, 2055, 2376, 2650, 3756, 5583 |
| BstX2I | RGATCY | 8 cut(s) | 846, 3109, 3768, 4318, 4570, 4647, 4801, 6485 |
| BstXI | CCANNNNNNTGG | 4 cut(s) | 578, 1848, 2831, 4451 |
| BstYI | RGATCY | 8 cut(s) | 846, 3109, 3768, 4318, 4570, 4647, 4801, 6485 |
| Bsu15I | ATCGAT | 1 cut(s) | 150 |
| Bsu36I | CCTNAGG | 1 cut(s) | 192 |
| BsuI | GTATCC | 5 cut(s) | 97, 2996, 3966, 4928, 6276 |
| BsuRI | GGCC | 9 cut(s) | 190, 1101, 1948, 2057, 4341, 4592, 4605, 5665, 5993 |
| BsuTUI | ATCGAT | 1 cut(s) | 150 |
| BtgI | CCRYGG | 5 cut(s) | 1669, 3055, 4600, 5207, 5334 |
| BtgZI | GCGATG | 2 cut(s) | 4712, 5870 |
| BtrI | CACGTC | 1 cut(s) | 2053 |
| BtsI | GCAGTG | 3 cut(s) | 1542, 2292, 6172 |
| BveI | ACCTGC | 3 cut(s) | 739, 1179, 4377 |
| CaiI | CAGNNNCTG | 4 cut(s) | 1300, 5126, 6120, 6328 |
| CciI | TCATGA | 4 cut(s) | 109, 1933, 2365, 4174 |
| Cfr10I | RCCGGY | 2 cut(s) | 1489, 4750 |
| Cfr42I | CCGCGG | 1 cut(s) | 5210 |
| ClaI | ATCGAT | 1 cut(s) | 150 |
| CseI | GACGC | 6 cut(s) | 272, 470, 1280, 3036, 3449, 6101 |
| CsiI | ACCWGGT | 1 cut(s) | 2229 |
| Csp6I | GTAC | 8 cut(s) | 55, 893, 973, 3529, 4356, 5236, 5362, 6460 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 4537, 4572, 5921, 5956 |
| CviQI | GTAC | 8 cut(s) | 55, 893, 973, 3529, 4356, 5236, 5362, 6460 |
| DraI | TTTAAA | 1 cut(s) | 2095 |
| DraIII | CACNNNGTG | 1 cut(s) | 6392 |
| DriI | GACNNNNNGTC | 1 cut(s) | 4920 |
| EaeI | YGGCCR | 1 cut(s) | 5991 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 4920 |
| Ecl136II | GAGCTC | 1 cut(s) | 3353 |
| Eco130I | CCWWGG | 7 cut(s) | 1327, 1418, 1669, 3055, 4233, 5401, 5524 |
| Eco147I | AGGCCT | 1 cut(s) | 190 |
| Eco24I | GRGCYC | 3 cut(s) | 3237, 3355, 3388 |
| Eco31I | GGTCTC | 1 cut(s) | 1869 |
| Eco32I | GATATC | 2 cut(s) | 1855, 5871 |
| Eco47I | GGWCC | 7 cut(s) | 1303, 2233, 3060, 4181, 4466, 4873, 6245 |
| Eco47III | AGCGCT | 1 cut(s) | 5573 |
| Eco53kI | GAGCTC | 1 cut(s) | 3353 |
| Eco57I | CTGAAG | 9 cut(s) | 945, 953, 1740, 1769, 4928, 5120, 5560, 5622, 5750 |
| Eco81I | CCTNAGG | 1 cut(s) | 192 |
| Eco88I | CYCGRG | 1 cut(s) | 99 |
| Eco91I | GGTNACC | 1 cut(s) | 167 |
| EcoICRI | GAGCTC | 1 cut(s) | 3353 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2583 |
| EcoO109I | RGGNCCY | 4 cut(s) | 1946, 2233, 4181, 6245 |
| EcoO65I | GGTNACC | 1 cut(s) | 167 |
| EcoRV | GATATC | 2 cut(s) | 1855, 5871 |
| EcoT14I | CCWWGG | 7 cut(s) | 1327, 1418, 1669, 3055, 4233, 5401, 5524 |
| EcoT22I | ATGCAT | 2 cut(s) | 829, 5486 |
| EcoT38I | GRGCYC | 3 cut(s) | 3237, 3355, 3388 |
| ErhI | CCWWGG | 7 cut(s) | 1327, 1418, 1669, 3055, 4233, 5401, 5524 |
| Esp3I | CGTCTC | 1 cut(s) | 341 |
| FauI | CCCGC | 6 cut(s) | 2061, 3369, 4391, 4839, 5789, 5940 |
| FbaI | TGATCA | 4 cut(s) | 532, 2656, 2767, 5428 |
| FblI | GTMKAC | 1 cut(s) | 4434 |
| FriOI | GRGCYC | 3 cut(s) | 3237, 3355, 3388 |
| FspI | TGCGCA | 1 cut(s) | 5055 |
| GsaI | CCCAGC | 3 cut(s) | 1596, 2436, 5310 |
| GsuI | CTGGAG | 7 cut(s) | 759, 821, 1328, 1893, 4664, 5249, 6516 |
| HaeII | RGCGCY | 4 cut(s) | 2891, 4007, 5575, 6495 |
| HaeIII | GGCC | 9 cut(s) | 190, 1101, 1948, 2057, 4341, 4592, 4605, 5665, 5993 |
| HapII | CCGG | 8 cut(s) | 128, 1198, 1490, 1800, 4623, 4751, 5178, 6489 |
| HgaI | GACGC | 6 cut(s) | 272, 470, 1280, 3036, 3449, 6101 |
| Hin1I | GRCGYC | 2 cut(s) | 283, 3340 |
| HincII | GTYRAC | 4 cut(s) | 81, 1110, 4435, 4460 |
| HindII | GTYRAC | 4 cut(s) | 81, 1110, 4435, 4460 |
| HindIII | AAGCTT | 1 cut(s) | 3284 |
| HpaI | GTTAAC | 1 cut(s) | 81 |
| HpaII | CCGG | 8 cut(s) | 128, 1198, 1490, 1800, 4623, 4751, 5178, 6489 |
| Hpy99I | CGWCG | 2 cut(s) | 4436, 4439 |
| HpyCH4IV | ACGT | 7 cut(s) | 235, 2052, 2352, 2840, 2873, 2910, 3340 |
| HpySE526I | ACGT | 7 cut(s) | 235, 2052, 2352, 2840, 2873, 2910, 3340 |
| Hsp92I | GRCGYC | 2 cut(s) | 283, 3340 |
| KroI | GCCGGC | 1 cut(s) | 4750 |
| KroNI | GCCGGC | 1 cut(s) | 4752 |
| Ksp22I | TGATCA | 4 cut(s) | 532, 2656, 2767, 5428 |
| KspAI | GTTAAC | 1 cut(s) | 81 |
| KspI | CCGCGG | 1 cut(s) | 5210 |
| LguI | GCTCTTC | 2 cut(s) | 897, 2923 |
| MabI | ACCWGGT | 1 cut(s) | 2229 |
| MaeII | ACGT | 7 cut(s) | 235, 2052, 2352, 2840, 2873, 2910, 3340 |
| MbiI | CCGCTC | 1 cut(s) | 5947 |
| MfeI | CAATTG | 2 cut(s) | 1116, 3389 |
| MflI | RGATCY | 8 cut(s) | 846, 3109, 3768, 4318, 4570, 4647, 4801, 6485 |
| MhlI | GDGCHC | 7 cut(s) | 800, 1034, 1582, 3237, 3355, 3388, 5042 |
| MlsI | TGGCCA | 1 cut(s) | 5993 |
| MluNI | TGGCCA | 1 cut(s) | 5993 |
| MmeI | TCCRAC | 7 cut(s) | 180, 1607, 2894, 3480, 3989, 4145, 4455 |
| Mox20I | TGGCCA | 1 cut(s) | 5993 |
| Mph1103I | ATGCAT | 2 cut(s) | 829, 5486 |
| MroNI | GCCGGC | 1 cut(s) | 4750 |
| MscI | TGGCCA | 1 cut(s) | 5993 |
| MslI | CAYNNNNRTG | 4 cut(s) | 883, 2297, 2364, 3720 |
| Msp20I | TGGCCA | 1 cut(s) | 5993 |
| MspA1I | CMGCKG | 2 cut(s) | 431, 5209 |
| MspCI | CTTAAG | 2 cut(s) | 2078, 4322 |
| MspI | CCGG | 8 cut(s) | 128, 1198, 1490, 1800, 4623, 4751, 5178, 6489 |
| MunI | CAATTG | 2 cut(s) | 1116, 3389 |
| Mva1269I | GAATGC | 2 cut(s) | 1509, 2812 |
| MvnI | CGCG | 3 cut(s) | 4896, 5209, 5759 |
| NaeI | GCCGGC | 1 cut(s) | 4752 |
| NciI | CCSGG | 3 cut(s) | 1198, 4623, 5179 |
| NcoI | CCATGG | 2 cut(s) | 1669, 3055 |
| NgoMIV | GCCGGC | 1 cut(s) | 4750 |
| NheI | GCTAGC | 2 cut(s) | 5153, 5902 |
| NsbI | TGCGCA | 1 cut(s) | 5055 |
| NsiI | ATGCAT | 2 cut(s) | 829, 5486 |
| NspI | RCATGY | 7 cut(s) | 35, 748, 1136, 2489, 3641, 4784, 5941 |
| NspV | TTCGAA | 1 cut(s) | 5686 |
| PaeI | GCATGC | 2 cut(s) | 748, 1136 |
| PagI | TCATGA | 4 cut(s) | 109, 1933, 2365, 4174 |
| PaqCI | CACCTGC | 1 cut(s) | 4377 |
| PasI | CCCWGGG | 1 cut(s) | 6182 |
| PceI | AGGCCT | 1 cut(s) | 190 |
| PciI | ACATGT | 2 cut(s) | 3637, 4780 |
| PciSI | GCTCTTC | 2 cut(s) | 897, 2923 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 3346 |
| PctI | GAATGC | 2 cut(s) | 1509, 2812 |
| PdiI | GCCGGC | 1 cut(s) | 4752 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 6328 |
| PfoI | TCCNGGA | 1 cut(s) | 4621 |
| Ppu21I | YACGTR | 1 cut(s) | 2841 |
| PpuMI | RGGWCCY | 3 cut(s) | 2233, 4181, 6245 |
| PscI | ACATGT | 2 cut(s) | 3637, 4780 |
| PshAI | GACNNNNGTC | 1 cut(s) | 4070 |
| PshBI | ATTAAT | 2 cut(s) | 4521, 5693 |
| PsiI | TTATAA | 4 cut(s) | 1665, 1910, 2555, 2681 |
| Psp124BI | GAGCTC | 1 cut(s) | 3355 |
| Psp1406I | AACGTT | 1 cut(s) | 2873 |
| Psp5II | RGGWCCY | 3 cut(s) | 2233, 4181, 6245 |
| PspEI | GGTNACC | 1 cut(s) | 167 |
| PspFI | CCCAGC | 3 cut(s) | 1592, 2432, 5306 |
| PspPPI | RGGWCCY | 3 cut(s) | 2233, 4181, 6245 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 5372, 5404 |
| PstI | CTGCAG | 3 cut(s) | 1629, 3264, 5967 |
| PstNI | CAGNNNCTG | 4 cut(s) | 1300, 5126, 6120, 6328 |
| PsuI | RGATCY | 8 cut(s) | 846, 3109, 3768, 4318, 4570, 4647, 4801, 6485 |
| RsaI | GTAC | 8 cut(s) | 56, 894, 974, 3530, 4357, 5237, 5363, 6461 |
| RsaNI | GTAC | 8 cut(s) | 55, 893, 973, 3529, 4356, 5236, 5362, 6460 |
| RseI | CAYNNNNRTG | 4 cut(s) | 883, 2297, 2364, 3720 |
| SacI | GAGCTC | 1 cut(s) | 3355 |
| SacII | CCGCGG | 1 cut(s) | 5210 |
| SalI | GTCGAC | 1 cut(s) | 4433 |
| SapI | GCTCTTC | 2 cut(s) | 897, 2923 |
| ScaI | AGTACT | 2 cut(s) | 4357, 6461 |
| SduI | GDGCHC | 7 cut(s) | 800, 1034, 1582, 3237, 3355, 3388, 5042 |
| SexAI | ACCWGGT | 1 cut(s) | 2229 |
| SfcI | CTRYAG | 6 cut(s) | 117, 1625, 2110, 2689, 3260, 5963 |
| Sfr303I | CCGCGG | 1 cut(s) | 5210 |
| SfuI | TTCGAA | 1 cut(s) | 5686 |
| SgrBI | CCGCGG | 1 cut(s) | 5210 |
| SgrDI | CGTCGACG | 1 cut(s) | 4433 |
| SinI | GGWCC | 7 cut(s) | 1303, 2233, 3060, 4181, 4466, 4873, 6245 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 883, 2297, 2364, 3720 |
| SphI | GCATGC | 2 cut(s) | 748, 1136 |
| SseBI | AGGCCT | 1 cut(s) | 190 |
| SspI | AATATT | 4 cut(s) | 262, 1567, 2008, 2705 |
| SstI | GAGCTC | 1 cut(s) | 3355 |
| StuI | AGGCCT | 1 cut(s) | 190 |
| StyI | CCWWGG | 7 cut(s) | 1327, 1418, 1669, 3055, 4233, 5401, 5524 |
| TaiI | ACGT | 7 cut(s) | 238, 2055, 2355, 2843, 2876, 2913, 3343 |
| TaqI | TCGA | 9 cut(s) | 150, 1077, 1942, 3877, 4434, 5686, 5862, 6039, 6141 |
| TaqII | GACCGA | 1 cut(s) | 1893 |
| TatI | WGTACW | 4 cut(s) | 54, 4355, 5361, 6459 |
| TauI | GCSGC | 2 cut(s) | 283, 3592 |
| TspGWI | ACGGA | 6 cut(s) | 578, 1481, 2843, 4619, 5014, 6370 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 6328 |
| Vha464I | CTTAAG | 2 cut(s) | 2078, 4322 |
| VneI | GTGCAC | 1 cut(s) | 1030 |
| VpaK11BI | GGWCC | 7 cut(s) | 1303, 2233, 3060, 4181, 4466, 4873, 6245 |
| VspI | ATTAAT | 2 cut(s) | 4521, 5693 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2583 |
| XapI | RAATTY | 6 cut(s) | 647, 980, 1920, 2096, 3711, 5101 |
| XbaI | TCTAGA | 2 cut(s) | 2611, 6103 |
| XceI | RCATGY | 7 cut(s) | 35, 748, 1136, 2489, 3641, 4784, 5941 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 70 |
| XmiI | GTMKAC | 1 cut(s) | 4434 |
| ZraI | GACGTC | 1 cut(s) | 3341 |
| ZrmI | AGTACT | 2 cut(s) | 4357, 6461 |
| Zsp2I | ATGCAT | 2 cut(s) | 829, 5486 |