U5 small nuclear ribonucleoprotein 200 kDa
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| ResIII | PF04851 | 106 - 281 | 1.3e-11 | Type III restriction enzyme, res subunit |
| DEAD | PF00270 | 107 - 285 | 7.4e-32 | DEAD/DEAH box helicase |
| Helicase_C | PF00271 | 396 - 483 | 2.8e-09 | Helicase conserved C-terminal domain |
| WHD_SNRNP200 | PF23445 | 514 - 590 | 6.9e-24 | Winged Helix-turn-helix domain |
| Sec63 | PF02889 | 606 - 909 | 1.5e-96 | Sec63 Brl domain |
| ResIII | PF04851 | 952 - 1092 | 1.5e-09 | Type III restriction enzyme, res subunit |
| DEAD | PF00270 | 955 - 1126 | 8.6e-26 | DEAD/DEAH box helicase |
| WHD_SNRNP200 | PF23445 | 1346 - 1426 | 5.4e-31 | Winged Helix-turn-helix domain |
| Sec63 | PF02889 | 1434 - 1756 | 8.7e-59 | Sec63 Brl domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 5217 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 563, 5123 |
| Acc16I | TGCGCA | 1 cut(s) | 3707 |
| Acc36I | ACCTGC | 1 cut(s) | 3091 |
| Acc65I | GGTACC | 1 cut(s) | 5052 |
| AccB1I | GGYRCC | 4 cut(s) | 142, 2139, 2641, 5052 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 3859, 4603 |
| AccBSI | CCGCTC | 1 cut(s) | 5186 |
| AccI | GTMKAC | 1 cut(s) | 4212 |
| AccII | CGCG | 1 cut(s) | 2001 |
| AclI | AACGTT | 1 cut(s) | 2052 |
| AclWI | GGATC | 7 cut(s) | 96, 1275, 1370, 1735, 2027, 3768, 3802 |
| AcoI | YGGCCR | 2 cut(s) | 1486, 5061 |
| AcsI | RAATTY | 8 cut(s) | 723, 1940, 2363, 2471, 3077, 3342, 3628, 3646 |
| AcuI | CTGAAG | 8 cut(s) | 410, 543, 2102, 2208, 3018, 4098, 4404, 4532 |
| AcyI | GRCGYC | 2 cut(s) | 143, 2140 |
| AdeI | CACNNNGTG | 1 cut(s) | 1348 |
| AjiI | CACGTC | 1 cut(s) | 4285 |
| AjnI | CCWGG | 8 cut(s) | 84, 797, 816, 1809, 2321, 2749, 4447, 4795 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1575, 1607, 2241, 2273 |
| Alw21I | GWGCWC | 5 cut(s) | 382, 417, 1050, 2155, 2481 |
| Alw26I | GTCTC | 5 cut(s) | 788, 2705, 3095, 3287, 4868 |
| Alw44I | GTGCAC | 1 cut(s) | 1046 |
| AlwI | GGATC | 7 cut(s) | 96, 1275, 1370, 1735, 2027, 3768, 3802 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 5198 |
| AoxI | GGCC | 4 cut(s) | 748, 1486, 4551, 5061 |
| ApaLI | GTGCAC | 1 cut(s) | 1046 |
| ApoI | RAATTY | 8 cut(s) | 723, 1940, 2363, 2471, 3077, 3342, 3628, 3646 |
| AseI | ATTAAT | 1 cut(s) | 3317 |
| Asp700I | GAANNNNTTC | 6 cut(s) | 1155, 1587, 2367, 2589, 2658, 3077 |
| Asp718I | GGTACC | 1 cut(s) | 5052 |
| AspLEI | GCGC | 5 cut(s) | 145, 502, 2142, 3708, 5026 |
| AsuC2I | CCSGG | 3 cut(s) | 388, 752, 4184 |
| AsuII | TTCGAA | 1 cut(s) | 4301 |
| AsuNHI | GCTAGC | 1 cut(s) | 1142 |
| BaeGI | GKGCMC | 1 cut(s) | 1050 |
| BalI | TGGCCA | 1 cut(s) | 1488 |
| BanI | GGYRCC | 4 cut(s) | 142, 2139, 2641, 5052 |
| BanII | GRGCYC | 3 cut(s) | 286, 2155, 2481 |
| BbsI | GAAGAC | 5 cut(s) | 139, 1450, 2872, 4388, 5082 |
| Bbv12I | GWGCWC | 5 cut(s) | 382, 417, 1050, 2155, 2481 |
| BbvCI | CCTCAGC | 1 cut(s) | 39 |
| BceAI | ACGGC | 1 cut(s) | 5076 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 95, 129 |
| BciT130I | CCWGG | 8 cut(s) | 86, 799, 818, 1811, 2323, 2751, 4449, 4797 |
| BciVI | GTATCC | 2 cut(s) | 1796, 1876 |
| BclI | TGATCA | 4 cut(s) | 1567, 1779, 2839, 5254 |
| BcnI | CCSGG | 3 cut(s) | 388, 752, 4184 |
| BcoDI | GTCTC | 5 cut(s) | 788, 2705, 3095, 3287, 4868 |
| BfmI | CTRYAG | 7 cut(s) | 994, 3098, 3579, 4003, 4400, 4946, 5190 |
| BfoI | RGCGCY | 2 cut(s) | 146, 2143 |
| BfuAI | ACCTGC | 1 cut(s) | 3091 |
| BfuI | GTATCC | 2 cut(s) | 1796, 1876 |
| BglII | AGATCT | 1 cut(s) | 2845 |
| BmcAI | AGTACT | 1 cut(s) | 2989 |
| BmgBI | CACGTC | 1 cut(s) | 4285 |
| BmiI | GGNNCC | 8 cut(s) | 83, 144, 1363, 2141, 2532, 2643, 3874, 5054 |
| BmrI | ACTGGG | 4 cut(s) | 2031, 3126, 3747, 3871 |
| BmtI | GCTAGC | 1 cut(s) | 1146 |
| BmuI | ACTGGG | 4 cut(s) | 2031, 3126, 3747, 3871 |
| BoxI | GACNNNNGTC | 3 cut(s) | 2876, 3299, 5165 |
| BpiI | GAAGAC | 5 cut(s) | 139, 1450, 2872, 4388, 5082 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 3075, 3107, 4665, 4697 |
| BpmI | CTGGAG | 6 cut(s) | 696, 2372, 3159, 3414, 4847, 4989 |
| Bpu10I | CCTNAGC | 2 cut(s) | 39, 2702 |
| Bpu14I | TTCGAA | 1 cut(s) | 4301 |
| BpuEI | CTTGAG | 3 cut(s) | 1036, 4398, 5018 |
| BpuMI | CCSGG | 3 cut(s) | 388, 752, 4184 |
| BsaBI | GATNNNNATC | 2 cut(s) | 2619, 2844 |
| BsaHI | GRCGYC | 2 cut(s) | 143, 2140 |
| BsaI | GGTCTC | 2 cut(s) | 788, 3095 |
| BsaJI | CCNNGG | 9 cut(s) | 387, 2322, 3048, 3129, 4183, 4306, 4448, 5058, 5064 |
| BsaWI | WCCGGW | 1 cut(s) | 2491 |
| Bse3DI | GCAATG | 4 cut(s) | 1830, 3024, 4644, 4666 |
| Bse8I | GATNNNNATC | 2 cut(s) | 2619, 2844 |
| BseBI | CCWGG | 8 cut(s) | 86, 799, 818, 1811, 2323, 2751, 4449, 4797 |
| BseDI | CCNNGG | 9 cut(s) | 387, 2322, 3048, 3129, 4183, 4306, 4448, 5058, 5064 |
| BseJI | GATNNNNATC | 2 cut(s) | 2619, 2844 |
| BseMI | GCAATG | 4 cut(s) | 1830, 3024, 4644, 4666 |
| BseRI | GAGGAG | 1 cut(s) | 4850 |
| BseSI | GKGCMC | 1 cut(s) | 1050 |
| BseYI | CCCAGC | 2 cut(s) | 3400, 5029 |
| BsgI | GTGCAG | 7 cut(s) | 425, 1080, 1458, 2154, 2465, 2907, 3860 |
| Bsh1236I | CGCG | 1 cut(s) | 2001 |
| BshFI | GGCC | 4 cut(s) | 750, 1488, 4553, 5063 |
| BshNI | GGYRCC | 4 cut(s) | 142, 2139, 2641, 5052 |
| BsiHKAI | GWGCWC | 5 cut(s) | 382, 417, 1050, 2155, 2481 |
| BsiSI | CCGG | 5 cut(s) | 387, 752, 1020, 2492, 4183 |
| BslFI | GGGAC | 6 cut(s) | 668, 1375, 1392, 1401, 1916, 5153 |
| BsmAI | GTCTC | 5 cut(s) | 788, 2705, 3095, 3287, 4868 |
| BsmBI | CGTCTC | 1 cut(s) | 3287 |
| BsmFI | GGGAC | 6 cut(s) | 668, 1375, 1392, 1401, 1916, 5153 |
| BsmI | GAATGC | 4 cut(s) | 1582, 1612, 3520, 4025 |
| BsnI | GGCC | 4 cut(s) | 750, 1488, 4553, 5063 |
| Bso31I | GGTCTC | 2 cut(s) | 788, 3095 |
| Bsp119I | TTCGAA | 1 cut(s) | 4301 |
| Bsp1286I | GDGCHC | 6 cut(s) | 286, 382, 417, 1050, 2155, 2481 |
| Bsp1407I | TGTACA | 3 cut(s) | 689, 1288, 3021 |
| Bsp19I | CCATGG | 2 cut(s) | 3129, 5064 |
| BspANI | GGCC | 4 cut(s) | 750, 1488, 4553, 5063 |
| BspFNI | CGCG | 1 cut(s) | 2001 |
| BspHI | TCATGA | 1 cut(s) | 2581 |
| BspLI | GGNNCC | 8 cut(s) | 83, 144, 1363, 2141, 2532, 2643, 3874, 5054 |
| BspMAI | CTGCAG | 4 cut(s) | 998, 3102, 4950, 5194 |
| BspMI | ACCTGC | 1 cut(s) | 3091 |
| BspOI | GCTAGC | 1 cut(s) | 1146 |
| BspPI | GGATC | 7 cut(s) | 96, 1275, 1370, 1735, 2027, 3768, 3802 |
| BspT104I | TTCGAA | 1 cut(s) | 4301 |
| BspT107I | GGYRCC | 4 cut(s) | 142, 2139, 2641, 5052 |
| BspTNI | GGTCTC | 2 cut(s) | 788, 3095 |
| BsrBI | CCGCTC | 1 cut(s) | 5186 |
| BsrDI | GCAATG | 4 cut(s) | 1830, 3024, 4644, 4666 |
| BsrGI | TGTACA | 3 cut(s) | 689, 1288, 3021 |
| BssECI | CCNNGG | 9 cut(s) | 387, 2322, 3048, 3129, 4183, 4306, 4448, 5058, 5064 |
| BssNI | GRCGYC | 2 cut(s) | 143, 2140 |
| BssT1I | CCWWGG | 3 cut(s) | 3129, 4306, 5064 |
| Bst2UI | CCWGG | 8 cut(s) | 86, 799, 818, 1811, 2323, 2751, 4449, 4797 |
| Bst6I | CTCTTC | 5 cut(s) | 1716, 2350, 2664, 4968, 5129 |
| BstACI | GRCGYC | 2 cut(s) | 143, 2140 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1316 |
| BstAUI | TGTACA | 3 cut(s) | 689, 1288, 3021 |
| BstBI | TTCGAA | 1 cut(s) | 4301 |
| BstC8I | GCNNGC | 9 cut(s) | 216, 1144, 1317, 1338, 1658, 1731, 3412, 4227, 4587 |
| BstDSI | CCRYGG | 3 cut(s) | 3129, 5058, 5064 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2326 |
| BstFNI | CGCG | 1 cut(s) | 2001 |
| BstH2I | RGCGCY | 2 cut(s) | 146, 2143 |
| BstHHI | GCGC | 5 cut(s) | 145, 502, 2142, 3708, 5026 |
| BstMAI | GTCTC | 5 cut(s) | 788, 2705, 3095, 3287, 4868 |
| BstNI | CCWGG | 8 cut(s) | 86, 799, 818, 1811, 2323, 2751, 4449, 4797 |
| BstNSI | RCATGY | 5 cut(s) | 812, 1289, 1660, 3545, 3593 |
| BstPAI | GACNNNNGTC | 3 cut(s) | 2876, 3299, 5165 |
| BstSFI | CTRYAG | 7 cut(s) | 994, 3098, 3579, 4003, 4400, 4946, 5190 |
| BstSLI | GKGCMC | 1 cut(s) | 1050 |
| BstUI | CGCG | 1 cut(s) | 2001 |
| BstV2I | GAAGAC | 5 cut(s) | 139, 1450, 2872, 4388, 5082 |
| BstX2I | RGATCY | 2 cut(s) | 1267, 2845 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 2270, 3183, 5065 |
| BstYI | RGATCY | 2 cut(s) | 1267, 2845 |
| BsuI | GTATCC | 2 cut(s) | 1796, 1876 |
| BsuRI | GGCC | 4 cut(s) | 750, 1488, 4553, 5063 |
| BtgI | CCRYGG | 3 cut(s) | 3129, 5058, 5064 |
| BtgZI | GCGATG | 1 cut(s) | 1487 |
| BtrI | CACGTC | 1 cut(s) | 4285 |
| BtsI | GCAGTG | 4 cut(s) | 417, 1003, 2883, 3636 |
| BveI | ACCTGC | 1 cut(s) | 3091 |
| Cac8I | GCNNGC | 9 cut(s) | 216, 1144, 1317, 1338, 1658, 1731, 3412, 4227, 4587 |
| CaiI | CAGNNNCTG | 1 cut(s) | 5198 |
| CciI | TCATGA | 1 cut(s) | 2581 |
| CfoI | GCGC | 5 cut(s) | 145, 502, 2142, 3708, 5026 |
| CpoI | CGGWCCG | 1 cut(s) | 3281 |
| CseI | GACGC | 1 cut(s) | 3428 |
| CsiI | ACCWGGT | 1 cut(s) | 2749 |
| CspI | CGGWCCG | 1 cut(s) | 3281 |
| DinI | GGCGCC | 2 cut(s) | 144, 2141 |
| DraI | TTTAAA | 1 cut(s) | 3787 |
| DraIII | CACNNNGTG | 1 cut(s) | 1348 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 563, 5123 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 563, 5123 |
| EaeI | YGGCCR | 2 cut(s) | 1486, 5061 |
| Eam1104I | CTCTTC | 5 cut(s) | 1716, 2350, 2664, 4968, 5129 |
| EarI | CTCTTC | 5 cut(s) | 1716, 2350, 2664, 4968, 5129 |
| EciI | GGCGGA | 1 cut(s) | 803 |
| Ecl136II | GAGCTC | 2 cut(s) | 2153, 2479 |
| Eco130I | CCWWGG | 3 cut(s) | 3129, 4306, 5064 |
| Eco24I | GRGCYC | 3 cut(s) | 286, 2155, 2481 |
| Eco31I | GGTCTC | 2 cut(s) | 788, 3095 |
| Eco53kI | GAGCTC | 2 cut(s) | 2153, 2479 |
| Eco57I | CTGAAG | 8 cut(s) | 410, 543, 2102, 2208, 3018, 4098, 4404, 4532 |
| EcoICRI | GAGCTC | 2 cut(s) | 2153, 2479 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2326 |
| EcoO109I | RGGNCCY | 2 cut(s) | 2737, 3385 |
| EcoRI | GAATTC | 1 cut(s) | 1940 |
| EcoRII | CCWGG | 8 cut(s) | 84, 797, 816, 1809, 2321, 2749, 4447, 4795 |
| EcoT14I | CCWWGG | 3 cut(s) | 3129, 4306, 5064 |
| EcoT22I | ATGCAT | 1 cut(s) | 2856 |
| EcoT38I | GRGCYC | 3 cut(s) | 286, 2155, 2481 |
| EgeI | GGCGCC | 2 cut(s) | 144, 2141 |
| EheI | GGCGCC | 2 cut(s) | 144, 2141 |
| ErhI | CCWWGG | 3 cut(s) | 3129, 4306, 5064 |
| Esp3I | CGTCTC | 1 cut(s) | 3287 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 4980, 5012, 5157, 5189 |
| FaqI | GGGAC | 6 cut(s) | 668, 1375, 1392, 1401, 1916, 5153 |
| FauI | CCCGC | 3 cut(s) | 3419, 4253, 5178 |
| FauNDI | CATATG | 2 cut(s) | 2948, 3921 |
| FbaI | TGATCA | 4 cut(s) | 1567, 1779, 2839, 5254 |
| FblI | GTMKAC | 1 cut(s) | 4212 |
| FriOI | GRGCYC | 3 cut(s) | 286, 2155, 2481 |
| FspI | TGCGCA | 1 cut(s) | 3707 |
| GlaI | GCGC | 5 cut(s) | 144, 501, 2141, 3707, 5025 |
| GsaI | CCCAGC | 2 cut(s) | 3404, 5033 |
| GsuI | CTGGAG | 6 cut(s) | 696, 2372, 3159, 3414, 4847, 4989 |
| HaeII | RGCGCY | 2 cut(s) | 146, 2143 |
| HaeIII | GGCC | 4 cut(s) | 750, 1488, 4553, 5063 |
| HapII | CCGG | 5 cut(s) | 387, 752, 1020, 2492, 4183 |
| HgaI | GACGC | 1 cut(s) | 3428 |
| HhaI | GCGC | 5 cut(s) | 145, 502, 2142, 3708, 5026 |
| Hin1I | GRCGYC | 2 cut(s) | 143, 2140 |
| Hin6I | GCGC | 5 cut(s) | 143, 500, 2140, 3706, 5024 |
| HinP1I | GCGC | 5 cut(s) | 143, 500, 2140, 3706, 5024 |
| HincII | GTYRAC | 5 cut(s) | 49, 1256, 1632, 3064, 5160 |
| HindII | GTYRAC | 5 cut(s) | 49, 1256, 1632, 3064, 5160 |
| HindIII | AAGCTT | 6 cut(s) | 704, 1617, 2084, 3779, 4416, 5111 |
| HpaII | CCGG | 5 cut(s) | 387, 752, 1020, 2492, 4183 |
| Hpy99I | CGWCG | 1 cut(s) | 3204 |
| HpyCH4IV | ACGT | 4 cut(s) | 2052, 3573, 3620, 4284 |
| HpySE526I | ACGT | 4 cut(s) | 2052, 3573, 3620, 4284 |
| Hsp92I | GRCGYC | 2 cut(s) | 143, 2140 |
| HspAI | GCGC | 5 cut(s) | 143, 500, 2140, 3706, 5024 |
| KasI | GGCGCC | 2 cut(s) | 142, 2139 |
| KpnI | GGTACC | 1 cut(s) | 5056 |
| Ksp22I | TGATCA | 4 cut(s) | 1567, 1779, 2839, 5254 |
| LmnI | GCTCC | 6 cut(s) | 385, 577, 2353, 2530, 4582, 5191 |
| MabI | ACCWGGT | 1 cut(s) | 2749 |
| MaeII | ACGT | 4 cut(s) | 2052, 3573, 3620, 4284 |
| MbiI | CCGCTC | 1 cut(s) | 5186 |
| MfeI | CAATTG | 6 cut(s) | 1571, 2007, 3042, 3531, 5121, 5178 |
| MflI | RGATCY | 2 cut(s) | 1267, 2845 |
| MhlI | GDGCHC | 6 cut(s) | 286, 382, 417, 1050, 2155, 2481 |
| MlsI | TGGCCA | 1 cut(s) | 1488 |
| MluNI | TGGCCA | 1 cut(s) | 1488 |
| Mly113I | GGCGCC | 2 cut(s) | 143, 2140 |
| MlyI | GAGTC | 9 cut(s) | 233, 301, 342, 595, 616, 2866, 4727, 4987, 5111 |
| MmeI | TCCRAC | 4 cut(s) | 511, 1698, 2283, 3259 |
| Mox20I | TGGCCA | 1 cut(s) | 1488 |
| Mph1103I | ATGCAT | 1 cut(s) | 2856 |
| MroXI | GAANNNNTTC | 6 cut(s) | 1155, 1587, 2367, 2589, 2658, 3077 |
| MscI | TGGCCA | 1 cut(s) | 1488 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1643, 2523, 5063 |
| Msp20I | TGGCCA | 1 cut(s) | 1488 |
| MspA1I | CMGCKG | 7 cut(s) | 94, 359, 1076, 1751, 2080, 3434, 5029 |
| MspI | CCGG | 5 cut(s) | 387, 752, 1020, 2492, 4183 |
| MunI | CAATTG | 6 cut(s) | 1571, 2007, 3042, 3531, 5121, 5178 |
| Mva1269I | GAATGC | 4 cut(s) | 1582, 1612, 3520, 4025 |
| MvaI | CCWGG | 8 cut(s) | 86, 799, 818, 1811, 2323, 2751, 4449, 4797 |
| MvnI | CGCG | 1 cut(s) | 2001 |
| NarI | GGCGCC | 2 cut(s) | 143, 2140 |
| NciI | CCSGG | 3 cut(s) | 388, 752, 4184 |
| NcoI | CCATGG | 2 cut(s) | 3129, 5064 |
| NdeI | CATATG | 2 cut(s) | 2948, 3921 |
| NheI | GCTAGC | 1 cut(s) | 1142 |
| NlaIV | GGNNCC | 8 cut(s) | 83, 144, 1363, 2141, 2532, 2643, 3874, 5054 |
| NmeAIII | GCCGAG | 2 cut(s) | 3073, 3667 |
| NmuCI | GTSAC | 8 cut(s) | 565, 587, 2800, 3616, 3772, 4730, 4990, 5095 |
| NsbI | TGCGCA | 1 cut(s) | 3707 |
| NsiI | ATGCAT | 1 cut(s) | 2856 |
| NspI | RCATGY | 5 cut(s) | 812, 1289, 1660, 3545, 3593 |
| NspV | TTCGAA | 1 cut(s) | 4301 |
| PaeI | GCATGC | 1 cut(s) | 1660 |
| PagI | TCATGA | 1 cut(s) | 2581 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 4281 |
| PctI | GAATGC | 4 cut(s) | 1582, 1612, 3520, 4025 |
| PdmI | GAANNNNTTC | 6 cut(s) | 1155, 1587, 2367, 2589, 2658, 3077 |
| PflFI | GACNNNGTC | 1 cut(s) | 2741 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 3859, 4603 |
| PfoI | TCCNGGA | 1 cut(s) | 4795 |
| PleI | GAGTC | 9 cut(s) | 233, 301, 341, 595, 616, 2866, 4727, 4987, 5111 |
| PluTI | GGCGCC | 2 cut(s) | 146, 2143 |
| PpsI | GAGTC | 9 cut(s) | 233, 301, 341, 595, 616, 2866, 4727, 4987, 5111 |
| PpuMI | RGGWCCY | 2 cut(s) | 2737, 3385 |
| PshAI | GACNNNNGTC | 3 cut(s) | 2876, 3299, 5165 |
| PshBI | ATTAAT | 1 cut(s) | 3317 |
| PsiI | TTATAA | 1 cut(s) | 5217 |
| Psp124BI | GAGCTC | 2 cut(s) | 2155, 2481 |
| Psp1406I | AACGTT | 1 cut(s) | 2052 |
| Psp5II | RGGWCCY | 2 cut(s) | 2737, 3385 |
| Psp6I | CCWGG | 8 cut(s) | 84, 797, 816, 1809, 2321, 2749, 4447, 4795 |
| PspFI | CCCAGC | 2 cut(s) | 3400, 5029 |
| PspGI | CCWGG | 8 cut(s) | 84, 797, 816, 1809, 2321, 2749, 4447, 4795 |
| PspN4I | GGNNCC | 8 cut(s) | 83, 144, 1363, 2141, 2532, 2643, 3874, 5054 |
| PspPPI | RGGWCCY | 2 cut(s) | 2737, 3385 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 4425, 4457 |
| PstI | CTGCAG | 4 cut(s) | 998, 3102, 4950, 5194 |
| PstNI | CAGNNNCTG | 1 cut(s) | 5198 |
| PsuI | RGATCY | 2 cut(s) | 1267, 2845 |
| PsyI | GACNNNGTC | 1 cut(s) | 2741 |
| PvuII | CAGCTG | 5 cut(s) | 94, 1076, 2080, 3434, 5029 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1643, 2523, 5063 |
| Rsr2I | CGGWCCG | 1 cut(s) | 3281 |
| RsrII | CGGWCCG | 1 cut(s) | 3281 |
| SacI | GAGCTC | 2 cut(s) | 2155, 2481 |
| ScaI | AGTACT | 1 cut(s) | 2989 |
| SchI | GAGTC | 9 cut(s) | 233, 301, 342, 595, 616, 2866, 4727, 4987, 5111 |
| SduI | GDGCHC | 6 cut(s) | 286, 382, 417, 1050, 2155, 2481 |
| SexAI | ACCWGGT | 1 cut(s) | 2749 |
| SfcI | CTRYAG | 7 cut(s) | 994, 3098, 3579, 4003, 4400, 4946, 5190 |
| SfoI | GGCGCC | 2 cut(s) | 144, 2141 |
| SfuI | TTCGAA | 1 cut(s) | 4301 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1643, 2523, 5063 |
| SmlI | CTYRAG | 3 cut(s) | 1051, 4413, 4997 |
| SmoI | CTYRAG | 3 cut(s) | 1051, 4413, 4997 |
| SphI | GCATGC | 1 cut(s) | 1660 |
| SspDI | GGCGCC | 2 cut(s) | 142, 2139 |
| SspI | AATATT | 3 cut(s) | 367, 2588, 3223 |
| SstI | GAGCTC | 2 cut(s) | 2155, 2481 |
| StyI | CCWWGG | 3 cut(s) | 3129, 4306, 5064 |
| TaiI | ACGT | 4 cut(s) | 2055, 3576, 3623, 4287 |
| TaqI | TCGA | 8 cut(s) | 105, 331, 1263, 2563, 2963, 3346, 4275, 4301 |
| TaqII | GACCGA | 3 cut(s) | 1379, 3298, 5114 |
| TatI | WGTACW | 6 cut(s) | 480, 689, 1288, 2987, 3021, 4340 |
| TauI | GCSGC | 2 cut(s) | 1963, 5186 |
| TseFI | GTSAC | 8 cut(s) | 565, 587, 2800, 3616, 3772, 4730, 4990, 5095 |
| Tsp45I | GTSAC | 8 cut(s) | 565, 587, 2800, 3616, 3772, 4730, 4990, 5095 |
| TspGWI | ACGGA | 4 cut(s) | 197, 2669, 2808, 2952 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2741 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 3859, 4603 |
| VneI | GTGCAC | 1 cut(s) | 1046 |
| VspI | ATTAAT | 1 cut(s) | 3317 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2326 |
| XapI | RAATTY | 8 cut(s) | 723, 1940, 2363, 2471, 3077, 3342, 3628, 3646 |
| XbaI | TCTAGA | 1 cut(s) | 4562 |
| XceI | RCATGY | 5 cut(s) | 812, 1289, 1660, 3545, 3593 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 3266, 3884, 4793 |
| XmiI | GTMKAC | 1 cut(s) | 4212 |
| XmnI | GAANNNNTTC | 6 cut(s) | 1155, 1587, 2367, 2589, 2658, 3077 |
| ZrmI | AGTACT | 1 cut(s) | 2989 |
| Zsp2I | ATGCAT | 1 cut(s) | 2856 |