Rmu_sc0005582.1_g000009

U5 small nuclear ribonucleoprotein 200 kDa

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005582.1
Physical Location & Seq
Reverse (-)
52270 .. 53949
1680 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005582.1_g000009.1.cds

Sequence Viewer

Length: 1680 bp
ctgttgcggtctctaaaagagatagagcctttcattaagaaaattagcaatgaacagttgcgagacgctttgcagcatggagtgggattcttgcacgagggactaaccagtgatgatcaagacattgtgtcagcactttttgaagctgagtatattcaatcgtgtgtcgtgagcagttcattgtgttggggagtgccgctgtcagcccatttggtggttgtgatgggaactcaatattatgatggccgggaaaatcttcacactgattacccagttgctgatctcttgcagatgattggtcatgcctgtcggcctaagaaagataattctgggaaatgtgtcatcctctgccatgctcctcgtaaagaatactacaagaagttcttatatgaagcattgcctgttgaaagccatttgcacaattacctacatgacaatataaatgcagaagttgtgggtcaagtaattgggaaccatgaaggggctctccattacctgacgtggacttttttctacaggaggctgacacaaaatcccaactattataatcttcagggagttacgcatgcgcatatttctgagtacctttcagagcttgttgaaaacacactgagtgacctggaaacaagcaagtgtgttgctgtcgaggatggcgacgtttctgccttaaatcttggcataatagcttcatattattatatcagttattctacaattgaacgtttcagtttgtccttaacttccaaaacaaagatgaagggtcttcttgagattctagctcatgcttcagagtattcacaactttccatacgacctggagaggaagatgtgattcgaaggttgattaaccaccagagattttctttcgataatcccgactgcacagatcctcacgtcaaagcatatgctcttctccaggctcattttgcaaggcatcatgtggctgggaacctatcactggaccagcgtgaggttctcctttctgcaagtaggttgcttcacgcaatggttgatgttgcttccaccaatggatggctaaacctctctctcctagcaatggaagtcagccagatggtcacgcaggggatgtgggatcgtgactcgatgcttctacagcttcctcacttcacaagggagctggcgaagagaagccaagaatttcctggaaagaatatagagagggtatctgatttggttgacatggagtatgatgagaggcgtgaactacttcgggaactacttaagatgtcagatgtacagttggaggatattgaacaattttgcaaacgatttcccagcattgaaacgacgcttaaggtgctggagagtgagaatgtaagagctggggaggaaatcagtttgcaagttgatgcggaccgtgaacatgttggccctgttgatgcgctgagatatcccaggaccaaagaagaggggtggtggctagtagtcggggataccaagactcactcactgcttgcaatcaagaaagttcccctactaaacaagtcgaagatccagcttagattttcggctcctgcagaagctggaaagaaggcatatacactgtatttcatgtgtgattcatatttggggtgtgatgaggaacataacttcactgtcgatgttaaagaaccagcaagccctgatgaagacggtgaaggcactgaaatgagaggatga

Protein Analysis

559

Amino Acids

63.61

Weight (kDa)

5.41

Isoelectric Point (pI)

47.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 546
Acc16I TGCGCA 1 cut(s) 570
AccB7I CCANNNNNTGG 2 cut(s) 214, 1032
AciI CCGC 3 cut(s) 7, 197, 1373
AclI AACGTT 1 cut(s) 721
AclWI GGATC 3 cut(s) 881, 1101, 1507
AcoI YGGCCR 1 cut(s) 244
AcsI RAATTY 1 cut(s) 1157
AcuI CTGAAG 2 cut(s) 536, 771
AdeI CACNNNGTG 1 cut(s) 614
AfaI GTAC 2 cut(s) 584, 1257
AfiI CCNNNNNNNGG 6 cut(s) 214, 481, 958, 970, 1032, 1057
AflII CTTAAG 2 cut(s) 1241, 1313
AflIII ACRYGT 1 cut(s) 1384
AgsI TTSAA 7 cut(s) 143, 158, 407, 602, 719, 1274, 1304
AhdI GACNNNNNGTC 1 cut(s) 127
AjiI CACGTC 2 cut(s) 501, 895
AjnI CCWGG 5 cut(s) 618, 814, 915, 1162, 1415
AluBI AGCT 9 cut(s) 146, 595, 686, 779, 1117, 1138, 1343, 1519, 1544
AluI AGCT 9 cut(s) 146, 595, 686, 779, 1117, 1138, 1343, 1519, 1544
Alw26I GTCTC 2 cut(s) 15, 57
AlwI GGATC 3 cut(s) 881, 1101, 1507
AlwNI CAGNNNCTG 2 cut(s) 278, 1544
AoxI GGCC 3 cut(s) 244, 311, 1390
ApeKI GCWGC 1 cut(s) 73
ApoI RAATTY 1 cut(s) 1157
Asp700I GAANNNNTTC 2 cut(s) 255, 1227
AspLEI GCGC 2 cut(s) 571, 1405
AspS9I GGNCC 4 cut(s) 961, 1375, 1391, 1419
AsuC2I CCSGG 1 cut(s) 248
AsuHPI GGTGA 1 cut(s) 1667
AsuII TTCGAA 1 cut(s) 835
AvaII GGWCC 3 cut(s) 961, 1375, 1419
BanII GRGCYC 1 cut(s) 487
BauI CACGAG 1 cut(s) 95
BbsI GAAGAC 2 cut(s) 755, 1656
BbvI GCAGC 1 cut(s) 85
BccI CCATC 5 cut(s) 217, 236, 644, 1026, 1066
BcgI CGANNNNNNTGC 2 cut(s) 644, 678
BciT130I CCWGG 5 cut(s) 620, 816, 917, 1164, 1417
BciVI GTATCC 1 cut(s) 1447
BclI TGATCA 1 cut(s) 115
BcnI CCSGG 1 cut(s) 248
BcoDI GTCTC 2 cut(s) 15, 57
BfaI CTAG 3 cut(s) 776, 1052, 1442
BfmI CTRYAG 3 cut(s) 514, 1112, 1536
BfrI CTTAAG 2 cut(s) 1241, 1313
BfuI GTATCC 1 cut(s) 1447
BisI GCNGC 2 cut(s) 74, 197
BlsI GCNGC 2 cut(s) 75, 198
Bme1390I CCNGG 6 cut(s) 248, 620, 816, 917, 1164, 1417
Bme18I GGWCC 3 cut(s) 961, 1375, 1419
BmeRI GACNNNNNGTC 1 cut(s) 127
BmgBI CACGTC 2 cut(s) 501, 895
BmgT120I GGNCC 4 cut(s) 961, 1375, 1391, 1419
BmiI GGNNCC 3 cut(s) 473, 950, 1533
BmrFI CCNGG 6 cut(s) 248, 620, 816, 917, 1164, 1417
BmrI ACTGGG 1 cut(s) 266
BmsI GCATC 4 cut(s) 943, 1095, 1360, 1390
BmuI ACTGGG 1 cut(s) 266
BpiI GAAGAC 2 cut(s) 755, 1656
BpmI CTGGAG 3 cut(s) 837, 899, 1343
Bpu14I TTCGAA 1 cut(s) 835
BpuEI CTTGAG 1 cut(s) 788
BpuMI CCSGG 1 cut(s) 248
BsaI GGTCTC 1 cut(s) 15
BsaJI CCNNGG 1 cut(s) 1415
Bsc4I CCNNNNNNNGG 6 cut(s) 214, 481, 958, 970, 1032, 1057
Bse1I ACTGG 3 cut(s) 108, 272, 963
Bse3DI GCAATG 4 cut(s) 55, 395, 1011, 1062
BseBI CCWGG 5 cut(s) 620, 816, 917, 1164, 1417
BseDI CCNNGG 1 cut(s) 1415
BseGI GGATG 4 cut(s) 342, 655, 1037, 1092
BseLI CCNNNNNNNGG 6 cut(s) 214, 481, 958, 970, 1032, 1057
BseMI GCAATG 4 cut(s) 55, 395, 1011, 1062
BseMII CTCAG 4 cut(s) 138, 570, 602, 1397
BseNI ACTGG 3 cut(s) 108, 272, 963
BseRI GAGGAG 1 cut(s) 348
BseXI GCAGC 1 cut(s) 85
BseYI CCCAGC 3 cut(s) 944, 1295, 1343
BsgI GTGCAG 1 cut(s) 865
BshFI GGCC 3 cut(s) 246, 313, 1392
BsiSI CCGG 1 cut(s) 247
BslFI GGGAC 1 cut(s) 114
BslI CCNNNNNNNGG 6 cut(s) 214, 481, 958, 970, 1032, 1057
BsmAI GTCTC 2 cut(s) 15, 57
BsmBI CGTCTC 1 cut(s) 57
BsmFI GGGAC 1 cut(s) 114
BsnI GGCC 3 cut(s) 246, 313, 1392
Bso31I GGTCTC 1 cut(s) 15
Bsp119I TTCGAA 1 cut(s) 835
Bsp1286I GDGCHC 1 cut(s) 487
Bsp1407I TGTACA 1 cut(s) 1255
Bsp143I GATC 5 cut(s) 115, 280, 886, 1093, 1512
BspACI CCGC 3 cut(s) 7, 197, 1373
BspANI GGCC 3 cut(s) 246, 313, 1392
BspCNI CTCAG 4 cut(s) 139, 571, 603, 1398
BspLI GGNNCC 3 cut(s) 473, 950, 1533
BspMAI CTGCAG 1 cut(s) 1540
BspPI GGATC 3 cut(s) 881, 1101, 1507
BspQI GCTCTTC 1 cut(s) 915
BspT104I TTCGAA 1 cut(s) 835
BspTI CTTAAG 2 cut(s) 1241, 1313
BspTNI GGTCTC 1 cut(s) 15
BsrDI GCAATG 4 cut(s) 55, 395, 1011, 1062
BsrGI TGTACA 1 cut(s) 1255
BsrI ACTGG 3 cut(s) 108, 272, 963
BssECI CCNNGG 1 cut(s) 1415
BssMI GATC 5 cut(s) 115, 280, 886, 1093, 1512
BssSI CACGAG 1 cut(s) 95
Bst2BI CACGAG 1 cut(s) 95
Bst2UI CCWGG 5 cut(s) 620, 816, 917, 1164, 1417
Bst4CI ACNGT 6 cut(s) 57, 1260, 1379, 1566, 1618, 1655
Bst6I CTCTTC 3 cut(s) 915, 1139, 1422
BstAFI CTTAAG 2 cut(s) 1241, 1313
BstAUI TGTACA 1 cut(s) 1255
BstBI TTCGAA 1 cut(s) 835
BstC8I GCNNGC 4 cut(s) 567, 1140, 1476, 1639
BstDEI CTNAG 6 cut(s) 147, 315, 579, 611, 1406, 1520
BstF5I GGATG 4 cut(s) 342, 655, 1037, 1092
BstHHI GCGC 2 cut(s) 571, 1405
BstKTI GATC 5 cut(s) 118, 283, 889, 1096, 1515
BstMAI GTCTC 2 cut(s) 15, 57
BstMBI GATC 5 cut(s) 115, 280, 886, 1093, 1512
BstMWI GCNNNNNNNGC 3 cut(s) 926, 1114, 1318
BstNI CCWGG 5 cut(s) 620, 816, 917, 1164, 1417
BstNSI RCATGY 2 cut(s) 569, 1388
BstSCI CCNGG 6 cut(s) 246, 618, 814, 915, 1162, 1415
BstSFI CTRYAG 3 cut(s) 514, 1112, 1536
BstV1I GCAGC 1 cut(s) 85
BstV2I GAAGAC 2 cut(s) 755, 1656
BstX2I RGATCY 2 cut(s) 886, 1512
BstYI RGATCY 2 cut(s) 886, 1512
BsuI GTATCC 1 cut(s) 1447
BsuRI GGCC 3 cut(s) 246, 313, 1392
BtrI CACGTC 2 cut(s) 501, 895
BtsCI GGATG 4 cut(s) 342, 655, 1037, 1092
BtsI GCAGTG 1 cut(s) 1469
BtsIMutI CAGTG 8 cut(s) 115, 261, 608, 956, 1469, 1562, 1614, 1662
Cac8I GCNNGC 4 cut(s) 567, 1140, 1476, 1639
CaiI CAGNNNCTG 2 cut(s) 278, 1544
CfoI GCGC 2 cut(s) 571, 1405
Cfr13I GGNCC 4 cut(s) 961, 1375, 1391, 1419
CpoI CGGWCCG 1 cut(s) 1375
CseI GACGC 2 cut(s) 74, 1318
Csp6I GTAC 2 cut(s) 583, 1256
CspI CGGWCCG 1 cut(s) 1375
CviQI GTAC 2 cut(s) 583, 1256
DdeI CTNAG 6 cut(s) 147, 315, 579, 611, 1406, 1520
DpnI GATC 5 cut(s) 117, 282, 888, 1095, 1514
DpnII GATC 5 cut(s) 115, 280, 886, 1093, 1512
DraIII CACNNNGTG 1 cut(s) 614
DriI GACNNNNNGTC 1 cut(s) 127
EaeI YGGCCR 1 cut(s) 244
Eam1104I CTCTTC 3 cut(s) 915, 1139, 1422
Eam1105I GACNNNNNGTC 1 cut(s) 127
EarI CTCTTC 3 cut(s) 915, 1139, 1422
Eco24I GRGCYC 1 cut(s) 487
Eco31I GGTCTC 1 cut(s) 15
Eco32I GATATC 1 cut(s) 1412
Eco47I GGWCC 3 cut(s) 961, 1375, 1419
Eco57I CTGAAG 2 cut(s) 536, 771
EcoRII CCWGG 5 cut(s) 618, 814, 915, 1162, 1415
EcoRV GATATC 1 cut(s) 1412
EcoT38I GRGCYC 1 cut(s) 487
Esp3I CGTCTC 1 cut(s) 57
FalI AAGNNNNNCTT 2 cut(s) 368, 400
FaqI GGGAC 1 cut(s) 114
FauNDI CATATG 1 cut(s) 904
FbaI TGATCA 1 cut(s) 115
Fnu4HI GCNGC 2 cut(s) 74, 197
FokI GGATG 4 cut(s) 329, 662, 1044, 1099
FriOI GRGCYC 1 cut(s) 487
Fsp4HI GCNGC 2 cut(s) 74, 197
FspAI RTGCGCAY 1 cut(s) 570
FspBI CTAG 3 cut(s) 776, 1052, 1442
FspI TGCGCA 1 cut(s) 570
GlaI GCGC 2 cut(s) 570, 1404
GluI GCNGC 2 cut(s) 74, 197
GsaI CCCAGC 3 cut(s) 948, 1299, 1347
GsuI CTGGAG 3 cut(s) 837, 899, 1343
HaeIII GGCC 3 cut(s) 246, 313, 1392
HapII CCGG 1 cut(s) 247
HgaI GACGC 2 cut(s) 74, 1318
HhaI GCGC 2 cut(s) 571, 1405
Hin6I GCGC 2 cut(s) 569, 1403
HinP1I GCGC 2 cut(s) 569, 1403
HincII GTYRAC 1 cut(s) 1198
HindII GTYRAC 1 cut(s) 1198
HinfI GANTC 6 cut(s) 87, 772, 832, 1100, 1462, 1580
HpaII CCGG 1 cut(s) 247
HphI GGTGA 1 cut(s) 1667
Hpy166II GTNNAC 4 cut(s) 504, 1198, 1223, 1382
Hpy188I TCNGA 5 cut(s) 580, 592, 790, 1189, 1252
Hpy188III TCNNGA 7 cut(s) 119, 169, 767, 875, 1097, 1232, 1483
Hpy8I GTNNAC 4 cut(s) 504, 1198, 1223, 1382
Hpy99I CGWCG 2 cut(s) 659, 1312
HpyAV CCTTC 5 cut(s) 473, 751, 831, 1546, 1652
HpyCH4III ACNGT 6 cut(s) 57, 1260, 1379, 1566, 1618, 1655
HpyCH4IV ACGT 4 cut(s) 500, 657, 721, 894
HpyF10VI GCNNNNNNNGC 3 cut(s) 926, 1114, 1318
HpyF3I CTNAG 6 cut(s) 147, 315, 579, 611, 1406, 1520
HpySE526I ACGT 4 cut(s) 500, 657, 721, 894
HspAI GCGC 2 cut(s) 569, 1403
Ksp22I TGATCA 1 cut(s) 115
Kzo9I GATC 5 cut(s) 115, 280, 886, 1093, 1512
LguI GCTCTTC 1 cut(s) 915
LmnI GCTCC 3 cut(s) 361, 1135, 1537
Lsp1109I GCAGC 1 cut(s) 85
LweI GCATC 4 cut(s) 943, 1095, 1360, 1390
MaeI CTAG 3 cut(s) 776, 1052, 1442
MaeII ACGT 4 cut(s) 500, 657, 721, 894
MaeIII GTNAC 4 cut(s) 559, 614, 1075, 1097
MalI GATC 5 cut(s) 117, 282, 888, 1095, 1514
MboI GATC 5 cut(s) 115, 280, 886, 1093, 1512
MboII GAAGA 9 cut(s) 248, 542, 755, 836, 902, 1156, 1439, 1522, 1661
MfeI CAATTG 1 cut(s) 714
MflI RGATCY 2 cut(s) 886, 1512
MhlI GDGCHC 1 cut(s) 487
MluCI AATT 7 cut(s) 42, 325, 421, 465, 714, 1157, 1277
MlyI GAGTC 2 cut(s) 1094, 1456
MmeI TCCRAC 1 cut(s) 1242
MroXI GAANNNNTTC 2 cut(s) 255, 1227
MseI TTAA 7 cut(s) 36, 668, 737, 846, 1242, 1314, 1626
MslI CAYNNNNRTG 1 cut(s) 1667
MspA1I CMGCKG 1 cut(s) 199
MspCI CTTAAG 2 cut(s) 1241, 1313
MspI CCGG 1 cut(s) 247
MspR9I CCNGG 6 cut(s) 248, 620, 816, 917, 1164, 1417
MunI CAATTG 1 cut(s) 714
MvaI CCWGG 5 cut(s) 620, 816, 917, 1164, 1417
MwoI GCNNNNNNNGC 3 cut(s) 926, 1114, 1318
NciI CCSGG 1 cut(s) 248
NdeI CATATG 1 cut(s) 904
NdeII GATC 5 cut(s) 115, 280, 886, 1093, 1512
NlaIV GGNNCC 3 cut(s) 473, 950, 1533
NmuCI GTSAC 3 cut(s) 614, 1075, 1097
NsbI TGCGCA 1 cut(s) 570
NspI RCATGY 2 cut(s) 569, 1388
NspV TTCGAA 1 cut(s) 835
PaeI GCATGC 1 cut(s) 569
PciI ACATGT 1 cut(s) 1384
PciSI GCTCTTC 1 cut(s) 915
PcsI WCGNNNNNNNCGW 2 cut(s) 651, 873
PdmI GAANNNNTTC 2 cut(s) 255, 1227
PfeI GAWTC 4 cut(s) 87, 772, 832, 1580
PflMI CCANNNNNTGG 2 cut(s) 214, 1032
PfoI TCCNGGA 1 cut(s) 1162
PkrI GCNGC 2 cut(s) 75, 198
PleI GAGTC 2 cut(s) 1094, 1456
PpsI GAGTC 2 cut(s) 1094, 1456
PscI ACATGT 1 cut(s) 1384
PsiI TTATAA 1 cut(s) 546
Psp1406I AACGTT 1 cut(s) 721
Psp6I CCWGG 5 cut(s) 618, 814, 915, 1162, 1415
PspFI CCCAGC 3 cut(s) 944, 1295, 1343
PspGI CCWGG 5 cut(s) 618, 814, 915, 1162, 1415
PspN4I GGNNCC 3 cut(s) 473, 950, 1533
PspPI GGNCC 4 cut(s) 961, 1375, 1391, 1419
PstI CTGCAG 1 cut(s) 1540
PstNI CAGNNNCTG 2 cut(s) 278, 1544
PsuI RGATCY 2 cut(s) 886, 1512
RsaI GTAC 2 cut(s) 584, 1257
RsaNI GTAC 2 cut(s) 583, 1256
RseI CAYNNNNRTG 1 cut(s) 1667
Rsr2I CGGWCCG 1 cut(s) 1375
RsrII CGGWCCG 1 cut(s) 1375
SapI GCTCTTC 1 cut(s) 915
SaqAI TTAA 7 cut(s) 36, 668, 737, 846, 1242, 1314, 1626
SatI GCNGC 2 cut(s) 74, 197
Sau3AI GATC 5 cut(s) 115, 280, 886, 1093, 1512
Sau96I GGNCC 4 cut(s) 961, 1375, 1391, 1419
SchI GAGTC 2 cut(s) 1094, 1456
ScrFI CCNGG 6 cut(s) 248, 620, 816, 917, 1164, 1417
SduI GDGCHC 1 cut(s) 487
SfaNI GCATC 4 cut(s) 943, 1095, 1360, 1390
SfcI CTRYAG 3 cut(s) 514, 1112, 1536
SfuI TTCGAA 1 cut(s) 835
SinI GGWCC 3 cut(s) 961, 1375, 1419
SmiMI CAYNNNNRTG 1 cut(s) 1667
SmlI CTYRAG 3 cut(s) 767, 1241, 1313
SmoI CTYRAG 3 cut(s) 767, 1241, 1313
SphI GCATGC 1 cut(s) 569
Sse9I AATT 7 cut(s) 42, 325, 421, 465, 714, 1157, 1277
SsiI CCGC 3 cut(s) 7, 197, 1373
SspI AATATT 1 cut(s) 236
SspMI CTAG 3 cut(s) 776, 1052, 1442
StyD4I CCNGG 6 cut(s) 246, 618, 814, 915, 1162, 1415
TaaI ACNGT 6 cut(s) 57, 1260, 1379, 1566, 1618, 1655
TaiI ACGT 4 cut(s) 503, 660, 724, 897
TaqI TCGA 6 cut(s) 645, 835, 867, 1103, 1508, 1620
TasI AATT 7 cut(s) 42, 325, 421, 465, 714, 1157, 1277
TatI WGTACW 1 cut(s) 1255
TauI GCSGC 1 cut(s) 199
TfiI GAWTC 4 cut(s) 87, 772, 832, 1580
Tru1I TTAA 7 cut(s) 36, 668, 737, 846, 1242, 1314, 1626
Tru9I TTAA 7 cut(s) 36, 668, 737, 846, 1242, 1314, 1626
TscAI CASTG 8 cut(s) 115, 268, 615, 963, 1476, 1569, 1621, 1669
TseFI GTSAC 3 cut(s) 614, 1075, 1097
TseI GCWGC 1 cut(s) 73
Tsp45I GTSAC 3 cut(s) 614, 1075, 1097
TspRI CASTG 8 cut(s) 115, 268, 615, 963, 1476, 1569, 1621, 1669
Van91I CCANNNNNTGG 2 cut(s) 214, 1032
Vha464I CTTAAG 2 cut(s) 1241, 1313
VpaK11BI GGWCC 3 cut(s) 961, 1375, 1419
XapI RAATTY 1 cut(s) 1157
XceI RCATGY 2 cut(s) 569, 1388
XcmI CCANNNNNNNNNTGG 1 cut(s) 1160
XmnI GAANNNNTTC 2 cut(s) 255, 1227
XspI CTAG 3 cut(s) 776, 1052, 1442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.