Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0000802

Physical Location & Seq

Genomic Coordinates Reverse (-)

49417075 .. 49417735

Gene Structure 661 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025950

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGTGGTTGTGATATGGAACTCAATATTATGGTGGGGAGTGCCGTCGTCAATTGTGATGGGAACTCAATATTATGATGGCCAGGAAAATCTTCACACTGATAACCCAGTTGCTGATCTCTTGCAGATGATTGGTCATGCCTGTCGCCCTAAGAAAGATAATTCTGGGAAATGTGTCATCCTCTGCCATGCTCCTCGTAAAGAATACTACAAAAAGTTCTTAAAAGAAGCATTGCCTGTTGAAAGCCATTTGCACCATTTCCTACATGACAATATAAATGCAGAAGTTGTAGCTCAAGTAATTGGGAACCATGAAGGGGCTCTCGATTACCTTACTTATTTTACAACTGAGCGTTTCAGTTCTTCCATAACTTCCAAAACAGAGACGAAGGGTTTTCTTGAGATTCTGGCTCATGCTTCAGAGTATTCTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000354 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005911 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009506 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0022613 GO:0022618 GO:0030054 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0042623 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0046540 GO:0055044 GO:0065003 GO:0070013 GO:0070035 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097525 GO:0097526 GO:0120114 GO:0140098 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD Helicase_C Sec63

Protein Analysis

145

Amino Acids

16.32

Weight (kDa)

6.11

Isoelectric Point (pI)

43.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_SNRNP200	PF23445	81 - 113	4.6e-08	Winged Helix-turn-helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20960 AT1G20960 AT2G42270
fragaria_vesca	FvH4_5g21940 FvH4_5g30070 FvH4_6g00860 FvH4_6g00860 FvH4_6g47200
malus_domestica	MD04G1240400.v1.1 MD09G1062900.v1.1 MD09G1063000.v1.1 MD12G1257300.v1.1
prunus_persica	Prupe.6G358100_v2.0.a1 Prupe.6G358100_v2.0.a1
pyrus_communis	pycom04g21210 pycom04g21230 pycom111g05330 pycom12g23600 pycom12g23620
rosa_chinensis	RchiOBHm_Chr2g0166221 RchiOBHm_Chr3g0448041 RchiOBHm_Chr3g0448351 RchiOBHm_Chr5g0014801 RchiOBHm_Chr7g0209461
rosa_laevigata	RLG00000003133 RLG00000021598 RLG00000021599 RLG00000025925 RLG00000025950 RLG00000025953 RLG00000032142
rosa_multiflora	Rmu_co8520521.1_g000001 Rmu_sc0005582.1_g000009 Rmu_sc0005969.1_g000018 Rmu_sc0015167.1_g000007 Rmu_ssc0000323.1_g000031
rosa_roxburghii	Rroxscaffold_1G00061750 Rroxscaffold_2G00085080 Rroxscaffold_3G00249430 Rroxscaffold_6G00426200 Rroxscaffold_6G00426480 Rroxscaffold_6G00426530
rosa_rugosa	Rorug02G0521300 Rorug02G0607900 Rorug02G0611500 Rorug02G0611600 Rorug07G0113200
rosa_samantha	Rh2AG587300 Rh2BG599200 Rh2CG569600 Rh2DG608900 Rh3AG010500 Rh3AG010600 Rh3BG010200 Rh3BG010300 Rh3CG009900 Rh3CG010000 Rh3DG010600 Rh3DG010700 Rh5CG124900 Rh7AG247100 Rh7BG242100 Rh7CG262700 Rh7DG253400
rosa_wichuraiana	Rw0G020040 Rw2G048960 Rw3G000580 Rw3G000830 Rw7G020900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	79
AcuI	CTGAAG	1 cut(s)	402
AfiI	CCNNNNNNNGG	1 cut(s)	316
AgsI	TTSAA	1 cut(s)	242
AjnI	CCWGG	1 cut(s)	81
AluBI	AGCT	1 cut(s)	293
AluI	AGCT	1 cut(s)	293
Alw26I	GTCTC	1 cut(s)	377
AlwNI	CAGNNNCTG	1 cut(s)	113
AoxI	GGCC	1 cut(s)	79
Asp700I	GAANNNNTTC	1 cut(s)	90
BalI	TGGCCA	1 cut(s)	81
BanII	GRGCYC	1 cut(s)	322
BccI	CCATC	2 cut(s)	52, 71
BceAI	ACGGC	1 cut(s)	28
BciT130I	CCWGG	1 cut(s)	83
BcoDI	GTCTC	1 cut(s)	377
Bme1390I	CCNGG	1 cut(s)	83
BmiI	GGNNCC	1 cut(s)	308
BmrFI	CCNGG	1 cut(s)	83
BmrI	ACTGGG	1 cut(s)	101
BmuI	ACTGGG	1 cut(s)	101
BpuEI	CTTGAG	2 cut(s)	279, 419
Bsc4I	CCNNNNNNNGG	1 cut(s)	316
Bse1I	ACTGG	1 cut(s)	107
Bse3DI	GCAATG	1 cut(s)	230
BseBI	CCWGG	1 cut(s)	83
BseGI	GGATG	1 cut(s)	177
BseLI	CCNNNNNNNGG	1 cut(s)	316
BseMI	GCAATG	1 cut(s)	230
BseMII	CTCAG	1 cut(s)	339
BseNI	ACTGG	1 cut(s)	107
BseRI	GAGGAG	1 cut(s)	183
BshFI	GGCC	1 cut(s)	81
BslI	CCNNNNNNNGG	1 cut(s)	316
BsmAI	GTCTC	1 cut(s)	377
BsmBI	CGTCTC	1 cut(s)	377
BsnI	GGCC	1 cut(s)	81
Bsp1286I	GDGCHC	1 cut(s)	322
Bsp143I	GATC	1 cut(s)	115
BspANI	GGCC	1 cut(s)	81
BspCNI	CTCAG	1 cut(s)	340
BspHI	TCATGA	1 cut(s)	431
BspLI	GGNNCC	1 cut(s)	308
BsrDI	GCAATG	1 cut(s)	230
BsrI	ACTGG	1 cut(s)	107
BssMI	GATC	1 cut(s)	115
Bst2UI	CCWGG	1 cut(s)	83
BstDEI	CTNAG	2 cut(s)	150, 348
BstF5I	GGATG	1 cut(s)	177
BstKTI	GATC	1 cut(s)	118
BstMAI	GTCTC	1 cut(s)	377
BstMBI	GATC	1 cut(s)	115
BstNI	CCWGG	1 cut(s)	83
BstSCI	CCNGG	1 cut(s)	81
BsuRI	GGCC	1 cut(s)	81
BtsCI	GGATG	1 cut(s)	177
BtsIMutI	CAGTG	1 cut(s)	96
CaiI	CAGNNNCTG	1 cut(s)	113
CciI	TCATGA	1 cut(s)	431
CviAII	CATG	6 cut(s)	137, 188, 266, 311, 413, 432
CviJI	RGCY	5 cut(s)	81, 246, 293, 320, 410
CviKI_1	RGCY	5 cut(s)	81, 246, 293, 320, 410
DdeI	CTNAG	2 cut(s)	150, 348
DpnI	GATC	1 cut(s)	117
DpnII	GATC	1 cut(s)	115
EaeI	YGGCCR	1 cut(s)	79
Eco24I	GRGCYC	1 cut(s)	322
Eco57I	CTGAAG	1 cut(s)	402
EcoRII	CCWGG	1 cut(s)	81
EcoT38I	GRGCYC	1 cut(s)	322
Esp3I	CGTCTC	1 cut(s)	377
FaeI	CATG	6 cut(s)	140, 191, 269, 314, 416, 435
FatI	CATG	6 cut(s)	136, 187, 265, 310, 412, 431
FokI	GGATG	1 cut(s)	164
FriOI	GRGCYC	1 cut(s)	322
HaeIII	GGCC	1 cut(s)	81
Hin1II	CATG	6 cut(s)	140, 191, 269, 314, 416, 435
HinfI	GANTC	1 cut(s)	403
Hpy188I	TCNGA	1 cut(s)	421
Hpy188III	TCNNGA	3 cut(s)	323, 398, 432
Hpy99I	CGWCG	1 cut(s)	49
HpyAV	CCTTC	2 cut(s)	308, 382
HpyCH4V	TGCA	3 cut(s)	124, 253, 281
HpyF3I	CTNAG	2 cut(s)	150, 348
Hsp92II	CATG	6 cut(s)	140, 191, 269, 314, 416, 435
Kzo9I	GATC	1 cut(s)	115
LmnI	GCTCC	1 cut(s)	196
LpnPI	CCDG	7 cut(s)	68, 95, 120, 150, 154, 249, 392
MalI	GATC	1 cut(s)	117
MboI	GATC	1 cut(s)	115
MboII	GAAGA	3 cut(s)	83, 354, 420
MfeI	CAATTG	1 cut(s)	51
MhlI	GDGCHC	1 cut(s)	322
MlsI	TGGCCA	1 cut(s)	81
MluCI	AATT	3 cut(s)	51, 160, 300
MluNI	TGGCCA	1 cut(s)	81
MnlI	CCTC	2 cut(s)	191, 204
Mox20I	TGGCCA	1 cut(s)	81
MroXI	GAANNNNTTC	1 cut(s)	90
MscI	TGGCCA	1 cut(s)	81
MseI	TTAA	1 cut(s)	221
Msp20I	TGGCCA	1 cut(s)	81
MspR9I	CCNGG	1 cut(s)	83
MunI	CAATTG	1 cut(s)	51
MvaI	CCWGG	1 cut(s)	83
NdeII	GATC	1 cut(s)	115
NlaIII	CATG	6 cut(s)	140, 191, 269, 314, 416, 435
NlaIV	GGNNCC	1 cut(s)	308
PagI	TCATGA	1 cut(s)	431
PdmI	GAANNNNTTC	1 cut(s)	90
PfeI	GAWTC	1 cut(s)	403
Psp6I	CCWGG	1 cut(s)	81
PspGI	CCWGG	1 cut(s)	81
PspN4I	GGNNCC	1 cut(s)	308
PstNI	CAGNNNCTG	1 cut(s)	113
SaqAI	TTAA	1 cut(s)	221
Sau3AI	GATC	1 cut(s)	115
ScrFI	CCNGG	1 cut(s)	83
SduI	GDGCHC	1 cut(s)	322
SetI	ASST	2 cut(s)	295, 333
SmlI	CTYRAG	2 cut(s)	294, 398
SmoI	CTYRAG	2 cut(s)	294, 398
Sse9I	AATT	3 cut(s)	51, 160, 300
SspI	AATATT	2 cut(s)	27, 71
StyD4I	CCNGG	1 cut(s)	81
TaqI	TCGA	1 cut(s)	324
TasI	AATT	3 cut(s)	51, 160, 300
TfiI	GAWTC	1 cut(s)	403
Tru1I	TTAA	1 cut(s)	221
Tru9I	TTAA	1 cut(s)	221
TscAI	CASTG	1 cut(s)	103
TspDTI	ATGAA	2 cut(s)	327, 420
TspRI	CASTG	1 cut(s)	103
XmnI	GAANNNNTTC	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.