RLG00000025925

U5 small nuclear ribonucleoprotein 200 kDa

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Forward (+)
49260638 .. 49262011
1374 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025925

Sequence Viewer

Length: 1242 bp
ATGCCTGTCGCCCTAAGAAAGATAATTCTGGGAAATGTGTCATCCTCTGCCATGCTAGAATACTACAAGAAGTTCTTATATGAAGCATTGCCTGTTGAAAGCCATTTGCACCAGTACCTACATGACAATATAAATGCAGAAGATGTGGCACACTTAATGGGGAACCATGAAGGGGCTCTCCATTACCTTACGTGGACTTTTTTCTATAGGAGGCTGACACAAAATCCCAACTATTATAATCTTCAGGGAGTTACGCATGAGCATATTTCTGAGTACCTTTCAGAGCTTGTTGAAAACACACTGAGTGACCTGGAAACAAGCAAGTGTGTTGCTGTCGAGGATGGCGACAGTACTCACAACTTAATTTCCATGCGACCTGGAGAGGAAGAGGTGATTCGAAGGTTAATTAACCACCAGAGATTTTCCTTTGAGAATCCCGACTGCACAGATCCTCACGTCAAAACATATGCTCTTCTCCAGGCTCATTTTGCAAGGCATCATGTGGTTGGGAACCTATCATTGGACCAGCGTGAGGTTCTCCTTTCTGCAAGTAGGTTGCTTCACGCAATGGTTGATGTTGCTTCCACCGGTGGATGGCTAAACCTTTCTCTCCTAGCAATGGAAGTCAGCCAGATGGTCACTCAGGGGATGTGGGATCGTGACTCGATGCTTCTACAGCTTCCTCACTTCTCAAGGGAGCTGGCGAGGAGATGCCAAGAATTTTCTGGAAAGAATATAGAGAGGGTATCTGATTTGGTTGACATGGAGTATGATGAGAGGCGTGAACTACTTCGGGAACTACTTCAGATGTCAGATGTACAGTTGGAGGATATTGAACAATTTTGCAAACGATTTCCCAGCATTGAAATGACATTTAAGGTGCTGGAGAATGAGAATGTAAGAGCTGGGGAGGAAATCAGTTTGCAAGTTGATGTGGACCATGAACATGTTGGCCCTGTTGATGCGCCGAGATATCCCAGGACCAAAGAAGAGGGGTGGTGGCCAGGAGTCGGGGATACCAAGACTAACTCACTGCTTGCAATCAAGAAAGCTCCCCTACTAAAGAAGTCGAAGATCCAGCTTAGATTTTCGGCTCCTGCAGAAGCTGGAAAGAAGATATATACACTGTATTTCATGTGTGATTCATATTTGGGGTGTGATGAGGAACATAACTTCACTGTCGATGTTAAAGAACCAGCAAGCCCTGATGAAGAAGGTGAAGACACTGAAATGAGAGGATGA

Protein Analysis

414

Amino Acids

47.53

Weight (kDa)

5.17

Isoelectric Point (pI)

46.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_SNRNP200 PF23445 33 - 114 1.3e-32 Winged Helix-turn-helix domain
Sec63 PF02889 121 - 392 1.1e-43 Sec63 Brl domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 237
AclWI GGATC 3 cut(s) 443, 663, 1069
AcoI YGGCCR 1 cut(s) 1001
AcsI RAATTY 1 cut(s) 719
AcuI CTGAAG 2 cut(s) 227, 788
AdeI CACNNNGTG 1 cut(s) 305
AfaI GTAC 4 cut(s) 116, 275, 352, 819
AfiI CCNNNNNNNGG 6 cut(s) 172, 520, 532, 594, 619, 1010
AflIII ACRYGT 1 cut(s) 946
AgeI ACCGGT 1 cut(s) 587
AgsI TTSAA 4 cut(s) 98, 293, 836, 866
AjiI CACGTC 1 cut(s) 457
AjnI CCWGG 5 cut(s) 309, 376, 477, 977, 1003
AjuI GAANNNNNNNTTGG 2 cut(s) 503, 535
AluBI AGCT 7 cut(s) 286, 679, 700, 905, 1052, 1081, 1106
AluI AGCT 7 cut(s) 286, 679, 700, 905, 1052, 1081, 1106
AlwI GGATC 3 cut(s) 443, 663, 1069
AlwNI CAGNNNCTG 1 cut(s) 1106
AoxI GGCC 2 cut(s) 952, 1001
ApoI RAATTY 1 cut(s) 719
AsiGI ACCGGT 1 cut(s) 587
Asp700I GAANNNNTTC 2 cut(s) 789, 801
AspLEI GCGC 1 cut(s) 967
AspS9I GGNCC 4 cut(s) 523, 937, 953, 981
AsuHPI GGTGA 2 cut(s) 403, 1229
AsuII TTCGAA 1 cut(s) 397
AvaII GGWCC 3 cut(s) 523, 937, 981
BalI TGGCCA 1 cut(s) 1003
BanII GRGCYC 1 cut(s) 178
BbsI GAAGAC 1 cut(s) 1227
BccI CCATC 3 cut(s) 335, 588, 628
BciT130I CCWGG 5 cut(s) 311, 378, 479, 979, 1005
BciVI GTATCC 1 cut(s) 1009
BfaI CTAG 2 cut(s) 56, 614
BfmI CTRYAG 3 cut(s) 205, 674, 1098
BfuI GTATCC 1 cut(s) 1009
BmcAI AGTACT 1 cut(s) 352
Bme1390I CCNGG 5 cut(s) 311, 378, 479, 979, 1005
Bme18I GGWCC 3 cut(s) 523, 937, 981
BmgBI CACGTC 1 cut(s) 457
BmgT120I GGNCC 4 cut(s) 523, 937, 953, 981
BmiI GGNNCC 3 cut(s) 164, 512, 1095
BmrFI CCNGG 5 cut(s) 311, 378, 479, 979, 1005
BmsI GCATC 4 cut(s) 505, 657, 701, 952
BpiI GAAGAC 1 cut(s) 1227
BpmI CTGGAG 3 cut(s) 399, 461, 905
Bpu14I TTCGAA 1 cut(s) 397
BpuEI CTTGAG 1 cut(s) 676
BsaAI YACGTR 1 cut(s) 192
BsaJI CCNNGG 1 cut(s) 977
BsaWI WCCGGW 1 cut(s) 587
Bsc4I CCNNNNNNNGG 6 cut(s) 172, 520, 532, 594, 619, 1010
Bse118I RCCGGY 1 cut(s) 587
Bse1I ACTGG 1 cut(s) 112
Bse3DI GCAATG 3 cut(s) 86, 573, 624
BseBI CCWGG 5 cut(s) 311, 378, 479, 979, 1005
BseDI CCNNGG 1 cut(s) 977
BseGI GGATG 4 cut(s) 41, 346, 599, 654
BseLI CCNNNNNNNGG 6 cut(s) 172, 520, 532, 594, 619, 1010
BseMI GCAATG 3 cut(s) 86, 573, 624
BseMII CTCAG 3 cut(s) 261, 293, 656
BseNI ACTGG 1 cut(s) 112
BseRI GAGGAG 1 cut(s) 721
BseYI CCCAGC 2 cut(s) 857, 905
BsgI GTGCAG 1 cut(s) 427
BshFI GGCC 2 cut(s) 954, 1003
BshTI ACCGGT 1 cut(s) 587
BsiSI CCGG 1 cut(s) 588
BslI CCNNNNNNNGG 6 cut(s) 172, 520, 532, 594, 619, 1010
BsnI GGCC 2 cut(s) 954, 1003
Bsp119I TTCGAA 1 cut(s) 397
Bsp1286I GDGCHC 1 cut(s) 178
Bsp1407I TGTACA 1 cut(s) 817
Bsp143I GATC 3 cut(s) 448, 655, 1074
BspANI GGCC 2 cut(s) 954, 1003
BspCNI CTCAG 3 cut(s) 262, 294, 655
BspLI GGNNCC 3 cut(s) 164, 512, 1095
BspMAI CTGCAG 1 cut(s) 1102
BspPI GGATC 3 cut(s) 443, 663, 1069
BspQI GCTCTTC 1 cut(s) 477
BspT104I TTCGAA 1 cut(s) 397
BsrDI GCAATG 3 cut(s) 86, 573, 624
BsrFI RCCGGY 1 cut(s) 587
BsrGI TGTACA 1 cut(s) 817
BsrI ACTGG 1 cut(s) 112
BssAI RCCGGY 1 cut(s) 587
BssECI CCNNGG 1 cut(s) 977
BssMI GATC 3 cut(s) 448, 655, 1074
Bst2UI CCWGG 5 cut(s) 311, 378, 479, 979, 1005
Bst4CI ACNGT 4 cut(s) 350, 822, 1128, 1180
Bst6I CTCTTC 3 cut(s) 381, 477, 984
BstAUI TGTACA 1 cut(s) 817
BstBAI YACGTR 1 cut(s) 192
BstBI TTCGAA 1 cut(s) 397
BstC8I GCNNGC 3 cut(s) 702, 1038, 1201
BstDEI CTNAG 5 cut(s) 14, 270, 302, 642, 1082
BstF5I GGATG 4 cut(s) 41, 346, 599, 654
BstHHI GCGC 1 cut(s) 967
BstKTI GATC 3 cut(s) 451, 658, 1077
BstMBI GATC 3 cut(s) 448, 655, 1074
BstMWI GCNNNNNNNGC 2 cut(s) 488, 676
BstNI CCWGG 5 cut(s) 311, 378, 479, 979, 1005
BstNSI RCATGY 1 cut(s) 950
BstSCI CCNGG 5 cut(s) 309, 376, 477, 977, 1003
BstSFI CTRYAG 3 cut(s) 205, 674, 1098
BstV2I GAAGAC 1 cut(s) 1227
BstX2I RGATCY 2 cut(s) 448, 1074
BstYI RGATCY 2 cut(s) 448, 1074
BsuI GTATCC 1 cut(s) 1009
BsuRI GGCC 2 cut(s) 954, 1003
BtrI CACGTC 1 cut(s) 457
BtsCI GGATG 4 cut(s) 41, 346, 599, 654
BtsI GCAGTG 1 cut(s) 1031
BtsIMutI CAGTG 5 cut(s) 299, 1031, 1124, 1176, 1224
Cac8I GCNNGC 3 cut(s) 702, 1038, 1201
CaiI CAGNNNCTG 1 cut(s) 1106
CfoI GCGC 1 cut(s) 967
Cfr10I RCCGGY 1 cut(s) 587
Cfr13I GGNCC 4 cut(s) 523, 937, 953, 981
Csp6I GTAC 4 cut(s) 115, 274, 351, 818
CspAI ACCGGT 1 cut(s) 587
CviQI GTAC 4 cut(s) 115, 274, 351, 818
DdeI CTNAG 5 cut(s) 14, 270, 302, 642, 1082
DpnI GATC 3 cut(s) 450, 657, 1076
DpnII GATC 3 cut(s) 448, 655, 1074
DraIII CACNNNGTG 1 cut(s) 305
EaeI YGGCCR 1 cut(s) 1001
Eam1104I CTCTTC 3 cut(s) 381, 477, 984
EarI CTCTTC 3 cut(s) 381, 477, 984
Eco24I GRGCYC 1 cut(s) 178
Eco32I GATATC 1 cut(s) 974
Eco47I GGWCC 3 cut(s) 523, 937, 981
Eco57I CTGAAG 2 cut(s) 227, 788
EcoRII CCWGG 5 cut(s) 309, 376, 477, 977, 1003
EcoRV GATATC 1 cut(s) 974
EcoT38I GRGCYC 1 cut(s) 178
FalI AAGNNNNNCTT 2 cut(s) 59, 91
FauNDI CATATG 1 cut(s) 466
FokI GGATG 4 cut(s) 28, 353, 606, 661
FriOI GRGCYC 1 cut(s) 178
FspBI CTAG 2 cut(s) 56, 614
GlaI GCGC 1 cut(s) 966
GsaI CCCAGC 2 cut(s) 861, 909
GsuI CTGGAG 3 cut(s) 399, 461, 905
HaeIII GGCC 2 cut(s) 954, 1003
HapII CCGG 1 cut(s) 588
HhaI GCGC 1 cut(s) 967
Hin6I GCGC 1 cut(s) 965
HinP1I GCGC 1 cut(s) 965
HincII GTYRAC 1 cut(s) 760
HindII GTYRAC 1 cut(s) 760
HinfI GANTC 5 cut(s) 394, 433, 662, 1008, 1142
HpaII CCGG 1 cut(s) 588
HphI GGTGA 2 cut(s) 403, 1229
Hpy166II GTNNAC 4 cut(s) 195, 760, 785, 937
Hpy188I TCNGA 5 cut(s) 271, 283, 751, 807, 814
Hpy188III TCNNGA 5 cut(s) 437, 659, 726, 794, 1045
Hpy8I GTNNAC 4 cut(s) 195, 760, 785, 937
HpyAV CCTTC 3 cut(s) 164, 393, 1208
HpyCH4III ACNGT 4 cut(s) 350, 822, 1128, 1180
HpyCH4IV ACGT 2 cut(s) 191, 456
HpyCH4V TGCA 9 cut(s) 109, 137, 444, 491, 548, 846, 925, 1040, 1100
HpyF10VI GCNNNNNNNGC 2 cut(s) 488, 676
HpyF3I CTNAG 5 cut(s) 14, 270, 302, 642, 1082
HpySE526I ACGT 2 cut(s) 191, 456
HspAI GCGC 1 cut(s) 965
Kzo9I GATC 3 cut(s) 448, 655, 1074
LguI GCTCTTC 1 cut(s) 477
LmnI GCTCC 3 cut(s) 697, 1057, 1099
LweI GCATC 4 cut(s) 505, 657, 701, 952
MaeI CTAG 2 cut(s) 56, 614
MaeII ACGT 2 cut(s) 191, 456
MaeIII GTNAC 4 cut(s) 250, 305, 637, 659
MalI GATC 3 cut(s) 450, 657, 1076
MboI GATC 3 cut(s) 448, 655, 1074
MboII GAAGA 9 cut(s) 152, 233, 398, 464, 1001, 1084, 1126, 1223, 1232
MflI RGATCY 2 cut(s) 448, 1074
MhlI GDGCHC 1 cut(s) 178
MlsI TGGCCA 1 cut(s) 1003
MluCI AATT 5 cut(s) 24, 363, 405, 719, 839
MluNI TGGCCA 1 cut(s) 1003
MlyI GAGTC 2 cut(s) 656, 1017
MmeI TCCRAC 1 cut(s) 804
Mox20I TGGCCA 1 cut(s) 1003
MroXI GAANNNNTTC 2 cut(s) 789, 801
MscI TGGCCA 1 cut(s) 1003
MseI TTAA 6 cut(s) 155, 362, 404, 408, 876, 1188
MslI CAYNNNNRTG 3 cut(s) 866, 945, 1229
Msp20I TGGCCA 1 cut(s) 1003
MspI CCGG 1 cut(s) 588
MspR9I CCNGG 5 cut(s) 311, 378, 479, 979, 1005
MvaI CCWGG 5 cut(s) 311, 378, 479, 979, 1005
MwoI GCNNNNNNNGC 2 cut(s) 488, 676
NdeI CATATG 1 cut(s) 466
NdeII GATC 3 cut(s) 448, 655, 1074
NlaIV GGNNCC 3 cut(s) 164, 512, 1095
NmeAIII GCCGAG 1 cut(s) 993
NmuCI GTSAC 3 cut(s) 305, 637, 659
NspI RCATGY 1 cut(s) 950
NspV TTCGAA 1 cut(s) 397
PacI TTAATTAA 1 cut(s) 408
PciI ACATGT 1 cut(s) 946
PciSI GCTCTTC 1 cut(s) 477
PcsI WCGNNNNNNNCGW 1 cut(s) 342
PdmI GAANNNNTTC 2 cut(s) 789, 801
PfeI GAWTC 3 cut(s) 394, 433, 1142
PinAI ACCGGT 1 cut(s) 587
PleI GAGTC 2 cut(s) 656, 1016
PpsI GAGTC 2 cut(s) 656, 1016
Ppu21I YACGTR 1 cut(s) 192
PscI ACATGT 1 cut(s) 946
PsiI TTATAA 1 cut(s) 237
Psp6I CCWGG 5 cut(s) 309, 376, 477, 977, 1003
PspFI CCCAGC 2 cut(s) 857, 905
PspGI CCWGG 5 cut(s) 309, 376, 477, 977, 1003
PspN4I GGNNCC 3 cut(s) 164, 512, 1095
PspPI GGNCC 4 cut(s) 523, 937, 953, 981
PstI CTGCAG 1 cut(s) 1102
PstNI CAGNNNCTG 1 cut(s) 1106
PsuI RGATCY 2 cut(s) 448, 1074
RsaI GTAC 4 cut(s) 116, 275, 352, 819
RsaNI GTAC 4 cut(s) 115, 274, 351, 818
RseI CAYNNNNRTG 3 cut(s) 866, 945, 1229
SapI GCTCTTC 1 cut(s) 477
SaqAI TTAA 6 cut(s) 155, 362, 404, 408, 876, 1188
Sau3AI GATC 3 cut(s) 448, 655, 1074
Sau96I GGNCC 4 cut(s) 523, 937, 953, 981
ScaI AGTACT 1 cut(s) 352
SchI GAGTC 2 cut(s) 656, 1017
ScrFI CCNGG 5 cut(s) 311, 378, 479, 979, 1005
SduI GDGCHC 1 cut(s) 178
SfaNI GCATC 4 cut(s) 505, 657, 701, 952
SfcI CTRYAG 3 cut(s) 205, 674, 1098
SfuI TTCGAA 1 cut(s) 397
SgrAI CRCCGGYG 1 cut(s) 587
SinI GGWCC 3 cut(s) 523, 937, 981
SmiMI CAYNNNNRTG 3 cut(s) 866, 945, 1229
SmlI CTYRAG 1 cut(s) 691
SmoI CTYRAG 1 cut(s) 691
Sse9I AATT 5 cut(s) 24, 363, 405, 719, 839
SspMI CTAG 2 cut(s) 56, 614
StyD4I CCNGG 5 cut(s) 309, 376, 477, 977, 1003
TaaI ACNGT 4 cut(s) 350, 822, 1128, 1180
TaiI ACGT 2 cut(s) 194, 459
TaqI TCGA 5 cut(s) 336, 397, 665, 1070, 1182
TasI AATT 5 cut(s) 24, 363, 405, 719, 839
TatI WGTACW 2 cut(s) 350, 817
TfiI GAWTC 3 cut(s) 394, 433, 1142
Tru1I TTAA 6 cut(s) 155, 362, 404, 408, 876, 1188
Tru9I TTAA 6 cut(s) 155, 362, 404, 408, 876, 1188
TscAI CASTG 5 cut(s) 306, 1038, 1131, 1183, 1231
TseFI GTSAC 3 cut(s) 305, 637, 659
Tsp45I GTSAC 3 cut(s) 305, 637, 659
TspDTI ATGAA 6 cut(s) 96, 183, 957, 1123, 1134, 1224
TspRI CASTG 5 cut(s) 306, 1038, 1131, 1183, 1231
VpaK11BI GGWCC 3 cut(s) 523, 937, 981
XapI RAATTY 1 cut(s) 719
XceI RCATGY 1 cut(s) 950
XcmI CCANNNNNNNNNTGG 2 cut(s) 722, 947
XmnI GAANNNNTTC 2 cut(s) 789, 801
XspI CTAG 2 cut(s) 56, 614
ZrmI AGTACT 1 cut(s) 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.