pycom04g21210

U5 small nuclear ribonucleoprotein 200 kDa

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Forward (+)
22496841 .. 22498238
1398 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g21210.1

Sequence Viewer

Length: 1398 bp
ATGCTGCAGTTGGGTCCAGATTTGGCTGCAATTGTAGAACAGCTGCATGCCACAAGGGCTAGTGCAAAGGAGAGGCAAAAGAACTTGGAGAAGAGTATTAGAGAAGAGGCTCGCAGGTTGAAGGATGAGAGTGGTGGAGATGGAGACAGGGGTAGGAGGGGCCTTGTCGATAGAGATGCTGACAGTGGTTGGTTGAAGGGGCAGGCAGAGCTACTTGATCTTGACAGCCTTGCACAAGAGCAAAGTAGACTTTTGGTGTCGAAGAAGTGCGTGCTTCCAGATGGGTCTTACAGACATCCCAGCAAGGGATATGAAGAAATCCATGTGCCAGCCTTGAAACAGAGACCATTTAATCCTGATGAGAAGCTTGTAAACATATCTGCCATGCCAGAGTGGGCTCAGCCGGCTTTCAAAGGAATGACCCAGTTGAACAGGGTACAGAGTAGAGTCTATGAGACTGCCCTTTTCAAAGCGGACAATATCCTGCTATGTGCTCCTACTGGTGCTGGAAAAACTAATGTTGCAGTGCTCACTATACTTCAGCAGTTTGCGCTGAACATGAACAAGGAGGACGGTTCCATAAACCACAGTGATTATAAGATTGTATATGTTGCGCCTATGAAAGCTCTTGTTGCGGAAGTTGTTGGAAATCTTTCTAATCGTTTGAAGGATTATGGTGTCAATGTGCGGGAGCTAAGTGGTGACCAGACATTGACTCGCCAACAGATTGAAGAAACTCAAATTATTGTGACAACCCCTGAGAAGTGGGATATCATTACCCGAAAGTCAGGAGACCGGACTTACACTCAACTGGTCAAACTTCTTATCATTGATGAAATTCATCTCCTTCATGATAATAGAGGCCCCGTTCTTGAAAGTATTGTTGCTAGAACTGTTAGGCAGATTGAGACCACGAAAGATCATATTCGGTTGGTGGGGTTATCTGCTACTCTCCCTAACTACGAAGATGTGGCATTGTTCTTGCGTGTTGACCTTAAGAAGGGACTGTTTTATTTTGATAACAGTTACAGACCTGTCCCCCTATCTCAACAGTATATTGGAATCATGGTGAGGAAACCATTACAGAGGTTCCAGTTGATGAATGATCTCTGCTATGAGAAGGTCGTAGCTGTAGCTGGAAAACATCAAGTCCTTATCTTTGTCCATTCGAGGAAAGAAACAGCCAAAACAGCTCGTGCTATAAGAGATACTGCTCTTGCCAAGGACACCCTTGGCAGGTTTCTTAAAGAAGACAGTGCTAGCCGAGAGATTCTAACTACTCATACAGATTTGGTCAAGAGCAATGATCTCAAAGATCTTCTGCCATACGGTTTTGCCATTCATCATGCTGGATTGAACAGGGCAGATCGCCAACTGGTTGAGCGATCTCTTTGCTGA

Protein Analysis

466

Amino Acids

52.45

Weight (kDa)

8.99

Isoelectric Point (pI)

34.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ResIII PF04851 144 - 319 4.9e-14 Type III restriction enzyme, res subunit
DEAD PF00270 145 - 323 1.5e-33 DEAD/DEAH box helicase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 597
Acc36I ACCTGC 2 cut(s) 105, 1227
AccI GTMKAC 1 cut(s) 247
AciI CCGC 3 cut(s) 473, 635, 688
AcsI RAATTY 1 cut(s) 837
AcuI CTGAAG 1 cut(s) 524
AfaI GTAC 1 cut(s) 438
AfiI CCNNNNNNNGG 3 cut(s) 305, 1000, 1236
AflII CTTAAG 1 cut(s) 995
AluBI AGCT 8 cut(s) 43, 211, 367, 626, 694, 1130, 1136, 1193
AluI AGCT 8 cut(s) 43, 211, 367, 626, 694, 1130, 1136, 1193
Alw21I GWGCWC 2 cut(s) 496, 531
Alw26I GTCTC 5 cut(s) 138, 337, 449, 786, 902
AoxI GGCC 2 cut(s) 160, 862
ApeKI GCWGC 3 cut(s) 4, 26, 43
ApoI RAATTY 1 cut(s) 837
Asp700I GAANNNNTTC 1 cut(s) 652
AspLEI GCGC 2 cut(s) 553, 616
AspS9I GGNCC 3 cut(s) 14, 160, 863
AsuHPI GGTGA 2 cut(s) 713, 1081
AsuNHI GCTAGC 1 cut(s) 1259
AvaII GGWCC 1 cut(s) 14
BanII GRGCYC 1 cut(s) 400
BauI CACGAG 1 cut(s) 1194
BbsI GAAGAC 1 cut(s) 1257
Bbv12I GWGCWC 2 cut(s) 496, 531
BbvI GCAGC 2 cut(s) 13, 30
BccI CCATC 2 cut(s) 134, 275
BcgI CGANNNNNNTGC 3 cut(s) 158, 192, 1374
BcoDI GTCTC 5 cut(s) 138, 337, 449, 786, 902
BfaI CTAG 3 cut(s) 60, 888, 1260
BfmI CTRYAG 2 cut(s) 5, 1131
BfrI CTTAAG 1 cut(s) 995
BfuAI ACCTGC 2 cut(s) 105, 1227
BglI GCCNNNNNGGC 1 cut(s) 56
BglII AGATCT 1 cut(s) 1315
BisI GCNGC 3 cut(s) 5, 27, 44
BlpI GCTNAGC 1 cut(s) 399
BlsI GCNGC 3 cut(s) 6, 28, 45
Bme18I GGWCC 1 cut(s) 14
BmgT120I GGNCC 3 cut(s) 14, 160, 863
BmiI GGNNCC 5 cut(s) 15, 161, 577, 865, 1091
BmrI ACTGGG 1 cut(s) 418
BmsI GCATC 1 cut(s) 166
BmtI GCTAGC 1 cut(s) 1263
BmuI ACTGGG 1 cut(s) 418
BpiI GAAGAC 1 cut(s) 1257
Bpu1102I GCTNAGC 1 cut(s) 399
BsaI GGTCTC 3 cut(s) 337, 786, 902
BsaJI CCNNGG 2 cut(s) 1221, 1231
BsaWI WCCGGW 1 cut(s) 795
Bsc4I CCNNNNNNNGG 3 cut(s) 305, 1000, 1236
Bse118I RCCGGY 1 cut(s) 403
Bse1I ACTGG 5 cut(s) 424, 505, 816, 1093, 1380
Bse3DI GCAATG 1 cut(s) 1309
BseDI CCNNGG 2 cut(s) 1221, 1231
BseGI GGATG 2 cut(s) 130, 295
BseLI CCNNNNNNNGG 3 cut(s) 305, 1000, 1236
BseMI GCAATG 1 cut(s) 1309
BseMII CTCAG 2 cut(s) 413, 750
BseNI ACTGG 5 cut(s) 424, 505, 816, 1093, 1380
BseXI GCAGC 2 cut(s) 13, 30
BseYI CCCAGC 1 cut(s) 299
BshFI GGCC 2 cut(s) 162, 864
BsiHKAI GWGCWC 2 cut(s) 496, 531
BsiSI CCGG 2 cut(s) 404, 796
BslFI GGGAC 2 cut(s) 1017, 1022
BslI CCNNNNNNNGG 3 cut(s) 305, 1000, 1236
BsmAI GTCTC 5 cut(s) 138, 337, 449, 786, 902
BsmFI GGGAC 2 cut(s) 1017, 1022
BsnI GGCC 2 cut(s) 162, 864
Bso31I GGTCTC 3 cut(s) 337, 786, 902
Bsp1286I GDGCHC 3 cut(s) 400, 496, 531
Bsp143I GATC 7 cut(s) 217, 919, 1105, 1306, 1315, 1366, 1385
Bsp1720I GCTNAGC 1 cut(s) 399
BspACI CCGC 3 cut(s) 473, 635, 688
BspANI GGCC 2 cut(s) 162, 864
BspCNI CTCAG 2 cut(s) 412, 751
BspHI TCATGA 1 cut(s) 850
BspLI GGNNCC 5 cut(s) 15, 161, 577, 865, 1091
BspMAI CTGCAG 1 cut(s) 9
BspMI ACCTGC 2 cut(s) 105, 1227
BspOI GCTAGC 1 cut(s) 1263
BspTI CTTAAG 1 cut(s) 995
BspTNI GGTCTC 3 cut(s) 337, 786, 902
BsrDI GCAATG 1 cut(s) 1309
BsrFI RCCGGY 1 cut(s) 403
BsrI ACTGG 5 cut(s) 424, 505, 816, 1093, 1380
BssAI RCCGGY 1 cut(s) 403
BssECI CCNNGG 2 cut(s) 1221, 1231
BssMI GATC 7 cut(s) 217, 919, 1105, 1306, 1315, 1366, 1385
BssSI CACGAG 1 cut(s) 1194
BssT1I CCWWGG 2 cut(s) 1221, 1231
Bst2BI CACGAG 1 cut(s) 1194
Bst4CI ACNGT 9 cut(s) 185, 575, 590, 895, 1008, 1025, 1053, 1256, 1331
Bst6I CTCTTC 2 cut(s) 86, 99
BstAFI CTTAAG 1 cut(s) 995
BstC8I GCNNGC 7 cut(s) 48, 112, 204, 272, 330, 405, 1261
BstDEI CTNAG 3 cut(s) 399, 695, 759
BstEII GGTNACC 1 cut(s) 701
BstENI CCTNNNNNAGG 1 cut(s) 998
BstF5I GGATG 2 cut(s) 130, 295
BstHHI GCGC 2 cut(s) 553, 616
BstKTI GATC 7 cut(s) 220, 922, 1108, 1309, 1318, 1369, 1388
BstMAI GTCTC 5 cut(s) 138, 337, 449, 786, 902
BstMBI GATC 7 cut(s) 217, 919, 1105, 1306, 1315, 1366, 1385
BstMWI GCNNNNNNNGC 6 cut(s) 56, 208, 404, 550, 632, 1190
BstNSI RCATGY 1 cut(s) 50
BstPI GGTNACC 1 cut(s) 701
BstSFI CTRYAG 2 cut(s) 5, 1131
BstV1I GCAGC 2 cut(s) 13, 30
BstV2I GAAGAC 1 cut(s) 1257
BstX2I RGATCY 1 cut(s) 1315
BstYI RGATCY 1 cut(s) 1315
BsuRI GGCC 2 cut(s) 162, 864
BtsCI GGATG 2 cut(s) 130, 295
BtsI GCAGTG 1 cut(s) 531
BtsIMutI CAGTG 4 cut(s) 190, 531, 595, 1261
BveI ACCTGC 2 cut(s) 105, 1227
Cac8I GCNNGC 7 cut(s) 48, 112, 204, 272, 330, 405, 1261
CciI TCATGA 1 cut(s) 850
CfoI GCGC 2 cut(s) 553, 616
Cfr10I RCCGGY 1 cut(s) 403
Cfr13I GGNCC 3 cut(s) 14, 160, 863
Csp6I GTAC 1 cut(s) 437
CviAII CATG 7 cut(s) 47, 323, 385, 559, 851, 1066, 1346
CviQI GTAC 1 cut(s) 437
DdeI CTNAG 3 cut(s) 399, 695, 759
DpnI GATC 7 cut(s) 219, 921, 1107, 1308, 1317, 1368, 1387
DpnII GATC 7 cut(s) 217, 919, 1105, 1306, 1315, 1366, 1385
Eam1104I CTCTTC 2 cut(s) 86, 99
EarI CTCTTC 2 cut(s) 86, 99
Eco130I CCWWGG 2 cut(s) 1221, 1231
Eco24I GRGCYC 1 cut(s) 400
Eco31I GGTCTC 3 cut(s) 337, 786, 902
Eco32I GATATC 1 cut(s) 772
Eco47I GGWCC 1 cut(s) 14
Eco57I CTGAAG 1 cut(s) 524
Eco91I GGTNACC 1 cut(s) 701
EcoNI CCTNNNNNAGG 1 cut(s) 998
EcoO109I RGGNCCY 2 cut(s) 160, 863
EcoO65I GGTNACC 1 cut(s) 701
EcoRV GATATC 1 cut(s) 772
EcoT14I CCWWGG 2 cut(s) 1221, 1231
EcoT38I GRGCYC 1 cut(s) 400
ErhI CCWWGG 2 cut(s) 1221, 1231
FaeI CATG 7 cut(s) 50, 326, 388, 562, 854, 1069, 1349
FaqI GGGAC 2 cut(s) 1017, 1022
FatI CATG 7 cut(s) 46, 322, 384, 558, 850, 1065, 1345
FauI CCCGC 1 cut(s) 681
FblI GTMKAC 1 cut(s) 247
Fnu4HI GCNGC 3 cut(s) 5, 27, 44
FokI GGATG 2 cut(s) 137, 282
FriOI GRGCYC 1 cut(s) 400
Fsp4HI GCNGC 3 cut(s) 5, 27, 44
FspBI CTAG 3 cut(s) 60, 888, 1260
GlaI GCGC 2 cut(s) 552, 615
GluI GCNGC 3 cut(s) 5, 27, 44
GsaI CCCAGC 1 cut(s) 303
HaeIII GGCC 2 cut(s) 162, 864
HapII CCGG 2 cut(s) 404, 796
HhaI GCGC 2 cut(s) 553, 616
Hin1II CATG 7 cut(s) 50, 326, 388, 562, 854, 1069, 1349
Hin6I GCGC 2 cut(s) 551, 614
HinP1I GCGC 2 cut(s) 551, 614
HincII GTYRAC 1 cut(s) 991
HindII GTYRAC 1 cut(s) 991
HindIII AAGCTT 1 cut(s) 365
HinfI GANTC 4 cut(s) 447, 715, 1062, 1270
HpaII CCGG 2 cut(s) 404, 796
HphI GGTGA 2 cut(s) 713, 1081
Hpy166II GTNNAC 3 cut(s) 248, 373, 991
Hpy188III TCNNGA 8 cut(s) 17, 221, 278, 356, 789, 851, 872, 1297
Hpy8I GTNNAC 3 cut(s) 248, 373, 991
HpyAV CCTTC 6 cut(s) 115, 190, 661, 857, 994, 1114
HpyCH4III ACNGT 9 cut(s) 185, 575, 590, 895, 1008, 1025, 1053, 1256, 1331
HpyCH4V TGCA 6 cut(s) 7, 29, 46, 65, 233, 524
HpyF10VI GCNNNNNNNGC 6 cut(s) 56, 208, 404, 550, 632, 1190
HpyF3I CTNAG 3 cut(s) 399, 695, 759
Hsp92II CATG 7 cut(s) 50, 326, 388, 562, 854, 1069, 1349
HspAI GCGC 2 cut(s) 551, 614
KroI GCCGGC 1 cut(s) 403
KroNI GCCGGC 1 cut(s) 405
Kzo9I GATC 7 cut(s) 217, 919, 1105, 1306, 1315, 1366, 1385
LmnI GCTCC 2 cut(s) 499, 691
Lsp1109I GCAGC 2 cut(s) 13, 30
LweI GCATC 1 cut(s) 166
MaeI CTAG 3 cut(s) 60, 888, 1260
MaeIII GTNAC 3 cut(s) 701, 748, 1025
MalI GATC 7 cut(s) 219, 921, 1107, 1308, 1317, 1368, 1387
MboI GATC 7 cut(s) 217, 919, 1105, 1306, 1315, 1366, 1385
MboII GAAGA 8 cut(s) 103, 116, 274, 326, 743, 977, 1262, 1310
MfeI CAATTG 1 cut(s) 30
MflI RGATCY 1 cut(s) 1315
MhlI GDGCHC 3 cut(s) 400, 496, 531
MluCI AATT 3 cut(s) 30, 741, 837
MlyI GAGTC 2 cut(s) 456, 709
MmeI TCCRAC 1 cut(s) 625
MnlI CCTC 8 cut(s) 66, 100, 150, 562, 854, 1065, 1080, 1164
MroNI GCCGGC 1 cut(s) 403
MroXI GAANNNNTTC 1 cut(s) 652
MseI TTAA 3 cut(s) 351, 996, 1245
MspA1I CMGCKG 1 cut(s) 43
MspCI CTTAAG 1 cut(s) 995
MspI CCGG 2 cut(s) 404, 796
MunI CAATTG 1 cut(s) 30
MwoI GCNNNNNNNGC 6 cut(s) 56, 208, 404, 550, 632, 1190
NaeI GCCGGC 1 cut(s) 405
NdeII GATC 7 cut(s) 217, 919, 1105, 1306, 1315, 1366, 1385
NgoMIV GCCGGC 1 cut(s) 403
NheI GCTAGC 1 cut(s) 1259
NlaIII CATG 7 cut(s) 50, 326, 388, 562, 854, 1069, 1349
NlaIV GGNNCC 5 cut(s) 15, 161, 577, 865, 1091
NmeAIII GCCGAG 1 cut(s) 1289
NmuCI GTSAC 2 cut(s) 701, 748
NspI RCATGY 1 cut(s) 50
PaeI GCATGC 1 cut(s) 50
PagI TCATGA 1 cut(s) 850
PdiI GCCGGC 1 cut(s) 405
PdmI GAANNNNTTC 1 cut(s) 652
PfeI GAWTC 2 cut(s) 1062, 1270
PkrI GCNGC 3 cut(s) 6, 28, 45
PleI GAGTC 2 cut(s) 455, 709
PpsI GAGTC 2 cut(s) 455, 709
PsiI TTATAA 1 cut(s) 597
PspEI GGTNACC 1 cut(s) 701
PspFI CCCAGC 1 cut(s) 299
PspN4I GGNNCC 5 cut(s) 15, 161, 577, 865, 1091
PspPI GGNCC 3 cut(s) 14, 160, 863
PstI CTGCAG 1 cut(s) 9
PsuI RGATCY 1 cut(s) 1315
PvuII CAGCTG 1 cut(s) 43
RsaI GTAC 1 cut(s) 438
RsaNI GTAC 1 cut(s) 437
SaqAI TTAA 3 cut(s) 351, 996, 1245
SatI GCNGC 3 cut(s) 5, 27, 44
Sau3AI GATC 7 cut(s) 217, 919, 1105, 1306, 1315, 1366, 1385
Sau96I GGNCC 3 cut(s) 14, 160, 863
SchI GAGTC 2 cut(s) 456, 709
SduI GDGCHC 3 cut(s) 400, 496, 531
SfaNI GCATC 1 cut(s) 166
SfcI CTRYAG 2 cut(s) 5, 1131
SinI GGWCC 1 cut(s) 14
SmlI CTYRAG 1 cut(s) 995
SmoI CTYRAG 1 cut(s) 995
SphI GCATGC 1 cut(s) 50
Sse9I AATT 3 cut(s) 30, 741, 837
SsiI CCGC 3 cut(s) 473, 635, 688
SspMI CTAG 3 cut(s) 60, 888, 1260
StyI CCWWGG 2 cut(s) 1221, 1231
TaaI ACNGT 9 cut(s) 185, 575, 590, 895, 1008, 1025, 1053, 1256, 1331
TaqI TCGA 3 cut(s) 168, 260, 1169
TasI AATT 3 cut(s) 30, 741, 837
TfiI GAWTC 2 cut(s) 1062, 1270
Tru1I TTAA 3 cut(s) 351, 996, 1245
Tru9I TTAA 3 cut(s) 351, 996, 1245
TscAI CASTG 4 cut(s) 190, 531, 595, 1261
TseFI GTSAC 2 cut(s) 701, 748
TseI GCWGC 3 cut(s) 4, 26, 43
Tsp45I GTSAC 2 cut(s) 701, 748
TspDTI ATGAA 8 cut(s) 327, 575, 635, 830, 839, 849, 1115, 1331
TspRI CASTG 4 cut(s) 190, 531, 595, 1261
Vha464I CTTAAG 1 cut(s) 995
VpaK11BI GGWCC 1 cut(s) 14
XagI CCTNNNNNAGG 1 cut(s) 998
XapI RAATTY 1 cut(s) 837
XceI RCATGY 1 cut(s) 50
XmiI GTMKAC 1 cut(s) 247
XmnI GAANNNNTTC 1 cut(s) 652
XspI CTAG 3 cut(s) 60, 888, 1260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.