Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005969.1

Orthogroup ID

OG0000802

Physical Location & Seq

Genomic Coordinates Forward (+)

47830 .. 48213

Gene Structure 384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005969.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

atgggaactcaatattatgatggccgggaaaatcttcacactgattacccaattgctgatctcttgcagatgattggtcatgcctgtcggcctaagaaagataattctgggaaatgtgtcatcctctgccatgctcctcgtaaagaatactacaagaagttcttatatgaagcattgcctgttgaaagtcatttgcaccattatttacatgacaatctaaatgcagaagttgtagcccaagtaatcgggaaccatgaaggggctctcaattaccttgcatggacatttttctacaggaggctcacacagaatcccaactattatcttcagggagttacgcacataattctgagtacctttcagagcttgttgaaaatacactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000354 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005911 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009506 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0022613 GO:0022618 GO:0030054 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0042623 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0046540 GO:0055044 GO:0065003 GO:0070013 GO:0070035 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097525 GO:0097526 GO:0120114 GO:0140098 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD Helicase_C Sec63

Protein Analysis

127

Amino Acids

14.85

Weight (kDa)

7.8

Isoelectric Point (pI)

44.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20960 AT1G20960 AT2G42270
fragaria_vesca	FvH4_5g21940 FvH4_5g30070 FvH4_6g00860 FvH4_6g00860 FvH4_6g47200
malus_domestica	MD04G1240400.v1.1 MD09G1062900.v1.1 MD09G1063000.v1.1 MD12G1257300.v1.1
prunus_persica	Prupe.6G358100_v2.0.a1 Prupe.6G358100_v2.0.a1
pyrus_communis	pycom04g21210 pycom04g21230 pycom111g05330 pycom12g23600 pycom12g23620
rosa_chinensis	RchiOBHm_Chr2g0166221 RchiOBHm_Chr3g0448041 RchiOBHm_Chr3g0448351 RchiOBHm_Chr5g0014801 RchiOBHm_Chr7g0209461
rosa_laevigata	RLG00000003133 RLG00000021598 RLG00000021599 RLG00000025925 RLG00000025950 RLG00000025953 RLG00000032142
rosa_multiflora	Rmu_co8520521.1_g000001 Rmu_sc0005582.1_g000009 Rmu_sc0005969.1_g000018 Rmu_sc0015167.1_g000007 Rmu_ssc0000323.1_g000031
rosa_roxburghii	Rroxscaffold_1G00061750 Rroxscaffold_2G00085080 Rroxscaffold_3G00249430 Rroxscaffold_6G00426200 Rroxscaffold_6G00426480 Rroxscaffold_6G00426530
rosa_rugosa	Rorug02G0521300 Rorug02G0607900 Rorug02G0611500 Rorug02G0611600 Rorug07G0113200
rosa_samantha	Rh2AG587300 Rh2BG599200 Rh2CG569600 Rh2DG608900 Rh3AG010500 Rh3AG010600 Rh3BG010200 Rh3BG010300 Rh3CG009900 Rh3CG010000 Rh3DG010600 Rh3DG010700 Rh5CG124900 Rh7AG247100 Rh7BG242100 Rh7CG262700 Rh7DG253400
rosa_wichuraiana	Rw0G020040 Rw2G048960 Rw3G000580 Rw3G000830 Rw7G020900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	22
AcuI	CTGAAG	1 cut(s)	311
AfaI	GTAC	1 cut(s)	355
AfiI	CCNNNNNNNGG	1 cut(s)	259
AgsI	TTSAA	2 cut(s)	185, 373
AluBI	AGCT	1 cut(s)	366
AluI	AGCT	1 cut(s)	366
AoxI	GGCC	2 cut(s)	22, 89
Asp700I	GAANNNNTTC	1 cut(s)	33
AsuC2I	CCSGG	1 cut(s)	26
BanII	GRGCYC	1 cut(s)	265
BccI	CCATC	1 cut(s)	14
BcnI	CCSGG	1 cut(s)	26
BfmI	CTRYAG	1 cut(s)	292
Bme1390I	CCNGG	1 cut(s)	26
BmiI	GGNNCC	1 cut(s)	251
BmrFI	CCNGG	1 cut(s)	26
BpuMI	CCSGG	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	1 cut(s)	259
Bse3DI	GCAATG	1 cut(s)	173
BseGI	GGATG	1 cut(s)	120
BseLI	CCNNNNNNNGG	1 cut(s)	259
BseMI	GCAATG	1 cut(s)	173
BseMII	CTCAG	1 cut(s)	341
BseRI	GAGGAG	1 cut(s)	126
BshFI	GGCC	2 cut(s)	24, 91
BsiSI	CCGG	1 cut(s)	25
BslI	CCNNNNNNNGG	1 cut(s)	259
BsnI	GGCC	2 cut(s)	24, 91
Bsp1286I	GDGCHC	1 cut(s)	265
Bsp143I	GATC	1 cut(s)	58
BspANI	GGCC	2 cut(s)	24, 91
BspCNI	CTCAG	1 cut(s)	342
BspLI	GGNNCC	1 cut(s)	251
BsrDI	GCAATG	1 cut(s)	173
BssMI	GATC	1 cut(s)	58
BstDEI	CTNAG	2 cut(s)	93, 350
BstF5I	GGATG	1 cut(s)	120
BstKTI	GATC	1 cut(s)	61
BstMBI	GATC	1 cut(s)	58
BstSCI	CCNGG	1 cut(s)	24
BstSFI	CTRYAG	1 cut(s)	292
BsuRI	GGCC	2 cut(s)	24, 91
BtsCI	GGATG	1 cut(s)	120
BtsIMutI	CAGTG	2 cut(s)	39, 379
Csp6I	GTAC	1 cut(s)	354
CviAII	CATG	5 cut(s)	80, 131, 209, 254, 279
CviJI	RGCY	6 cut(s)	24, 91, 236, 263, 301, 366
CviKI_1	RGCY	6 cut(s)	24, 91, 236, 263, 301, 366
CviQI	GTAC	1 cut(s)	354
DdeI	CTNAG	2 cut(s)	93, 350
DpnI	GATC	1 cut(s)	60
DpnII	GATC	1 cut(s)	58
EaeI	YGGCCR	1 cut(s)	22
Eco24I	GRGCYC	1 cut(s)	265
Eco57I	CTGAAG	1 cut(s)	311
EcoT38I	GRGCYC	1 cut(s)	265
FaeI	CATG	5 cut(s)	83, 134, 212, 257, 282
FaiI	YATR	9 cut(s)	18, 81, 132, 166, 168, 210, 255, 280, 344
FalI	AAGNNNNNCTT	2 cut(s)	146, 178
FatI	CATG	5 cut(s)	79, 130, 208, 253, 278
FokI	GGATG	1 cut(s)	107
FriOI	GRGCYC	1 cut(s)	265
HaeIII	GGCC	2 cut(s)	24, 91
HapII	CCGG	1 cut(s)	25
Hin1II	CATG	5 cut(s)	83, 134, 212, 257, 282
HinfI	GANTC	1 cut(s)	310
HpaII	CCGG	1 cut(s)	25
Hpy188I	TCNGA	2 cut(s)	351, 363
Hpy188III	TCNNGA	1 cut(s)	247
HpyAV	CCTTC	1 cut(s)	251
HpyCH4V	TGCA	4 cut(s)	67, 196, 224, 278
HpyF3I	CTNAG	2 cut(s)	93, 350
Hsp92II	CATG	5 cut(s)	83, 134, 212, 257, 282
Kzo9I	GATC	1 cut(s)	58
LmnI	GCTCC	1 cut(s)	139
LpnPI	CCDG	6 cut(s)	38, 93, 97, 192, 280, 314
MaeIII	GTNAC	1 cut(s)	334
MalI	GATC	1 cut(s)	60
MboI	GATC	1 cut(s)	58
MboII	GAAGA	2 cut(s)	26, 317
MfeI	CAATTG	1 cut(s)	51
MhlI	GDGCHC	1 cut(s)	265
MluCI	AATT	4 cut(s)	51, 103, 268, 345
MnlI	CCTC	3 cut(s)	134, 147, 291
MroXI	GAANNNNTTC	1 cut(s)	33
MspI	CCGG	1 cut(s)	25
MspR9I	CCNGG	1 cut(s)	26
MunI	CAATTG	1 cut(s)	51
NciI	CCSGG	1 cut(s)	26
NdeII	GATC	1 cut(s)	58
NlaIII	CATG	5 cut(s)	83, 134, 212, 257, 282
NlaIV	GGNNCC	1 cut(s)	251
PdmI	GAANNNNTTC	1 cut(s)	33
PfeI	GAWTC	1 cut(s)	310
PspN4I	GGNNCC	1 cut(s)	251
RsaI	GTAC	1 cut(s)	355
RsaNI	GTAC	1 cut(s)	354
Sau3AI	GATC	1 cut(s)	58
ScrFI	CCNGG	1 cut(s)	26
SduI	GDGCHC	1 cut(s)	265
SetI	ASST	3 cut(s)	276, 359, 368
SfcI	CTRYAG	1 cut(s)	292
Sse9I	AATT	4 cut(s)	51, 103, 268, 345
SspI	AATATT	1 cut(s)	14
StyD4I	CCNGG	1 cut(s)	24
TasI	AATT	4 cut(s)	51, 103, 268, 345
TfiI	GAWTC	1 cut(s)	310
TscAI	CASTG	1 cut(s)	46
TspDTI	ATGAA	2 cut(s)	183, 270
TspRI	CASTG	1 cut(s)	46
XmnI	GAANNNNTTC	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.