Rmu_co8520521.1_g000001

U5 small nuclear ribonucleoprotein 200 kDa

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8520521.1
Physical Location & Seq
Forward (+)
1 .. 5722
5722 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8520521.1_g000001.1.cds

Sequence Viewer

Length: 5722 bp
ggagtcggtggcgggcggagcgattgttgatggtgatgatgtaatggtggaatgtagtgaaggtgtgagtgtgaatgttcatgagattgatgcttactgggtgcagaggaagatatatgaggcttatgagaaacagattgagccacaacagtgtcgggagctagctgaagaggtggttagtatactcggtgaaggtggtgttagggatgtggaatccaggcttttggagaagctccggtttgacaagtttgggcttattaagtttttgttgctgaacagggtgaagattgtgtggtgtactcgtttggctagagctgggggacaggaggagaggaagagaatcgaggaggagatgttgcgttcgggtcctgattcggctgcaattgtagaggagctttgtttgatgagggctagtgtgaaagagaggcaaaagagtaaggagatgagtattaaagcagaggctcggaagttgaagaaggctggggttgttgacagagatggagaaagtggtgattggtggaagaaccaggatcagcagcttgatctcgacagcattgcacaagaacaaagtagaagatttttggtgccaaacaagtttgagcttccgaaagggtcttacagacattcaagcaagggatatgaagaaatccatgtgccggcattgaagcctagacctttcaactctgatgagaaacttgtgctagtatctgccatgccagaatggactcaactggctttcaaaggaatgactcagttgaatagggtacaaagtcaagtatataggactgcccttgaagcagcggacaatattctcttatgtgctcctactgggtctggaaaaactaatgttgcagtgctcactatacttcagcagttggggctgcacatgaatcaggaggacggttcaatagaccacagtaagtacaaaattgtatatattgcgcccatgaaagcccttgttgctgaagttgttggaaatctctctaatcgtttgcaggactatggtgtcacggtgagggagctaagtggtgaccacacactgactcaccaacaaattgaagagactcaaattatcgtctcaactcctgagaagtgggacatcattaccaggaagtcgggagattatacttctacaaaacgggtcaagcttcttatcattgacgaaattcatcttctccatgatagtagaggcccggttcttgaaagtattgttgcccgaactgtcaggcagattgagaccacgaaagagcatgtccgcctggtgggattatctgctacacttcctaactatgaagatgtggcgtcattcttgcgtgttgataagaagggtctgttttattttgacaatagtttcagacctatccctctttcgcaacagtatattggaattactgcaaggaagtcatggcagaagtaccagttgatgaagcaactctgctatgaaaaggtgatggctgtagctggaaaacatcaagttcttatttttgtacactcaaggaaagaaacagctaaaacagcgggtgatataagagattctgcacttgctaatgattcccttggtagatttctgaaagaagacagcggtagctgtgaaatcattcgcagtgaattggtcaaaatcaagagcaatgatctcaaaagtcttttaccatatggttttgctattcatcatgctggtatggacagagcagaccgccaactggttgaggatctctttgctaaagggcatgtacaagttttggtttccactgcaacgcttgcttggggtgtgaatctgccagctcacactgtgattatcaaagggaccgaaatctatgatccagaaaagggagcatggactgaactaagtccgcttgatgttatgcagatgttgggtcgtgcaggaagaccccagtatgattcgtgtggagaagggataatcattactggccacaaggaactacatcactatctttctttaatgaaccaacaacttcctattgaaagtcaatttctgtccaagttggctgatcaattgaatgcagaaattgttcttggaaatgttcagaatgctagagaagcttctcattggttaacatactcttacatgtatgttcgcatgctaaaaagtcctatcctttatggcttggaagctgatgttctggcaaaagatagtaagttggaggagaggcgagctgatttgatccattctgctgcaaccatcttggaaaagaacaatatgatcgtatatgatagaagaagtggatacttccaggttacagacttgggtcgcattgccagttattattatataacacatggaacagtgtccacatataatgtgcatttaaagccaacgatgggggacagtgagctttgtcgattgttctctctcagtgaagaatttaagtatgtaactgtgcggcaggatgaaaagattgaattggcaaaacttttggaccgcgtaccaattgtggtcaaggaaagcctggacgagcccagtgccaagattaatgttttgctgcaagcctacatttcacagctgaagcttgaaggtttttctttggcatctgatatgagttttattactcagagtgcagggcgccttcttcgagctctttttgagattgccttgaaacgaggatgggctgaagtggcagaaaaggctttgaacttgtgtaaaatggttagcaggaggatgtggactgtccaaacactgtttcgccaattcaatggattgataacaaatgatattttgatgaagttagagaagaaggatttagcctgggaaaggtattatgacctgtcttcacaggagctaggggaacttattcgtttccctactttgggcagaacacttcataagttggtccaccagtttcccaaattaaacctcgcagcccatttgcagccaattactcacacagtattgaaatttgagctcactataacaccggattttcaatgggaggacaaagttcatggatatgtggagccattttgggtaatagtggagaataatgatcgagagcatattcttcatcacgaatatttcctgctgaaaaaacagtatatggatgaagatcatactttgatctttacggtgccaatatatgaacctcttccacctcaatattttatccgtgttgtgtctgataggtggcttaggtccgagactgttttacctgttttattcagggacctcatcttacctgcaaagtgtcctccaccgactgagttattggacttgcaaccacttcctgtgactgcattgaggaatccgttatacgaggctctgtatgatcaagatcttatgcatttcaattctgtccagactcaggtcttcactgctttgtataattcagatgacaatgttttagttgctgcaccaacaggaaatgggaagaccatatgtgcagagtttgcgatattgaggaatcatcagaagagcactgaacctgaaggttgtgtcatgcgtgttgtgtacattgcatcttttgatgcaattgccgaggtaacttatgttgactggaagaagaaatttggagatggtctcaaactgaacgttgtaaaattaactggggaattagccatggacttgaaattgctcgagcaaggtcaagttatcatcagcactccagagaaatgggactatctatcccgttgctggaaacggagagagaatgttcaacaagttagtctttttattgtggatgaactccacctgattagtggtgagggcggacagatcatagagacaatagtctctagaatgagactgatagccagtcgacccaagaccaagattcgcattgtggctctttcaacttctgttgcaaatgcaaaggaccttggagaatggataggagatgcctgcattttcaatttttctccaggtgtgcgtcaagtgcctctggatattgacattcagggggttgatttggcaaacttttatgcaaggatggaagctatggtgaaagcaacatggactgcaattgttcaacatgccaagaatgggaaacaagctcttgtgtacgttcctacaatgaaacatgtccgactaactgctaagaatctggtgacttactcaaattctgacattgtcgagaagttgtcatttttattgcagttttcagaagatattggaaaagttagtgatgaaaaactgcgaagcactttgagctgtggggtgggctacttgcatgagggattacccagcgaggatcaagaagctgtgacaaagctttttaaagatcgatcaatccaagtctgtgtcgtgagcagttcaatgtgttggggagtgccgttgtcagcccatttggtggttgtgatgggaacccagtattatgatggcactgattaccctgttactgatctgttgcagatgatgggtcatgccaatctcccgcagccaaatgattctgggaaatgtgttatcctttgtcacgcgcctcgtaaagaatactacaggaagttcttgtacgaagcattccctgttgaaagccaattgcaccattacctacatgatatcctaaatgctgaagttgtttctggtattattgaaaccatgcaagacgctgttgattaccttagctggactttcttgtttaggaggctgacgcaaaatcccaactattatgaactccagggagttacttaccgacatttatctgatcacctctcaaggcttgttgaaactacagtttatgatttgaaaagaagtgggtgtgttagcatcgaggatgacatggatctttatcctttgaaccttggtgtgatagctacatattatcacgctaagtatactaccatcgagcgtttcagttcttccttaacttccaaaacaacagtgaagggtcttctgcagattctagctcaagcttcggagttttcagaacttcctatacgaccaggggaggaagaggtgatccaaaggttagcaaaccaccagaggttttcctttgagaatcccaaatacacagattctcatgataaagcacttgctctgcttcaggcccatttctctagacaacctgtgggtgcggagctggctttggaccagcaagaggtgctgacaaatgcaagtaggttgattcatgcaatggttgatgtgtgttgcaccaacgggtggctaagagttgctcttctagtgatggaagtcagccagatgctgacccagggattgtggaagggtgactcagagtttctacagcttcctcacttcacaaaggagttggcaaagagatgccaagaaaatcctggaaagagtgtgcaaaccatatctgatttgaaggagatgaaggatgacgagaggcatcaactccttcagttgccagagacggagttgatggccattgaacatttttgcgaacaatttcctgacattgtgatagattatgaggtgctggagagtgagaatgtacgggccggggaagaattcactctggaagtgaatctcgagtttaggcataaggtgagaacagcccagttgggctgtgatgacgtgaagaggtaccgcaaggacaaagaagacgggtgttgggttgtggtgagcgataacaagcttgactcagttgtctttataaagagagttccccatgttaagaagttgacgaaactcccagttacaattgctgctcctgcagaagctggaacgacggcacattataagctttttttgatgtgtgattcctatatgggatgcgatcaggaatctgacttgattcctgttgagataaagtag

Protein Analysis

1906

Amino Acids

216.86

Weight (kDa)

6.04

Isoelectric Point (pI)

40.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 5562, 5647
AasI GACNNNNNNGTC 2 cut(s) 1005, 5553
Acc36I ACCTGC 1 cut(s) 3200
Acc65I GGTACC 1 cut(s) 5491
AccB1I GGYRCC 4 cut(s) 584, 2581, 3083, 5491
AccB7I CCANNNNNTGG 2 cut(s) 4301, 5107
AccI GTMKAC 3 cut(s) 182, 3770, 4782
AccII CGCG 2 cut(s) 2443, 4428
AclI AACGTT 1 cut(s) 3544
AclWI GGATC 7 cut(s) 538, 1717, 1812, 2177, 4210, 4738, 4901
AcoI YGGCCR 2 cut(s) 1928, 5329
AcsI RAATTY 6 cut(s) 1165, 2382, 2913, 3519, 4070, 5415
AcuI CTGAAG 9 cut(s) 187, 852, 985, 2544, 2650, 3460, 4540, 4974, 5289
AcyI GRCGYC 2 cut(s) 1302, 2582
AdeI CACNNNGTG 1 cut(s) 1790
AflIII ACRYGT 2 cut(s) 2086, 4031
AjiI CACGTC 1 cut(s) 5483
AjuI GAANNNNNNNTTGG 4 cut(s) 2017, 2049, 2683, 2715
AleI CACNNNNGTG 1 cut(s) 149
Alw21I GWGCWC 5 cut(s) 824, 859, 2597, 2923, 3432
Alw26I GTCTC 9 cut(s) 1056, 1082, 1230, 3147, 3537, 3729, 3749, 3749, 5310
AlwI GGATC 7 cut(s) 538, 1717, 1812, 2177, 4210, 4738, 4901
AlwNI CAGNNNCTG 2 cut(s) 5150, 5628
Ama87I CYCGRG 2 cut(s) 3588, 5436
AoxI GGCC 5 cut(s) 1190, 1928, 4993, 5329, 5404
ApoI RAATTY 6 cut(s) 1165, 2382, 2913, 3519, 4070, 5415
AseI ATTAAT 1 cut(s) 2491
Asp700I GAANNNNTTC 5 cut(s) 1597, 2029, 2809, 3100, 5353
Asp718I GGTACC 1 cut(s) 5491
AspLEI GCGC 3 cut(s) 944, 2584, 4430
AsuC2I CCSGG 2 cut(s) 1194, 5408
AsuNHI GCTAGC 1 cut(s) 161
AvaI CYCGRG 2 cut(s) 3588, 5436
AvaII GGWCC 8 cut(s) 366, 1804, 2438, 2849, 3148, 3179, 3827, 5036
BalI TGGCCA 2 cut(s) 1930, 5331
BanI GGYRCC 4 cut(s) 584, 2581, 3083, 5491
BanII GRGCYC 3 cut(s) 2479, 2597, 2923
BarI GAAGNNNNNNTAC 2 cut(s) 4443, 4475
BbsI GAAGAC 7 cut(s) 1582, 1892, 2779, 3314, 3390, 4830, 5515
Bbv12I GWGCWC 5 cut(s) 824, 859, 2597, 2923, 3432
BceAI ACGGC 2 cut(s) 4268, 5653
BcgI CGANNNNNNTGC 4 cut(s) 537, 571, 2463, 2497
BciVI GTATCC 1 cut(s) 2238
BclI TGATCA 3 cut(s) 2009, 3281, 4652
BcnI CCSGG 2 cut(s) 1194, 5408
BcoDI GTCTC 9 cut(s) 1056, 1082, 1230, 3147, 3537, 3729, 3749, 3749, 5310
BfmI CTRYAG 6 cut(s) 1456, 4445, 4678, 4842, 5187, 5620
BfoI RGCGCY 1 cut(s) 2585
BfuAI ACCTGC 1 cut(s) 3200
BfuI GTATCC 1 cut(s) 2238
BglII AGATCT 1 cut(s) 3287
Bme18I GGWCC 8 cut(s) 366, 1804, 2438, 2849, 3148, 3179, 3827, 5036
BmeT110I CYCGRG 2 cut(s) 3588, 5436
BmgBI CACGTC 1 cut(s) 5483
BmiI GGNNCC 9 cut(s) 367, 586, 1805, 2583, 2974, 3085, 3180, 4316, 5493
BmrI ACTGGG 8 cut(s) 107, 838, 1886, 2473, 3568, 4313, 5459, 5595
BmtI GCTAGC 1 cut(s) 165
BmuI ACTGGG 8 cut(s) 107, 838, 1886, 2473, 3568, 4313, 5459, 5595
BoxI GACNNNNGTC 3 cut(s) 2266, 3318, 3741
BpiI GAAGAC 7 cut(s) 1582, 1892, 2779, 3314, 3390, 4830, 5515
BplI GAGNNNNNCTC 2 cut(s) 3517, 3549
BpmI CTGGAG 4 cut(s) 3601, 3856, 4608, 5406
Bpu10I CCTNAGC 2 cut(s) 3144, 4569
BpuEI CTTGAG 3 cut(s) 1478, 4646, 4840
BpuMI CCSGG 2 cut(s) 1194, 5408
Bsa29I ATCGAT 1 cut(s) 4235
BsaBI GATNNNNATC 3 cut(s) 3061, 3286, 4735
BsaHI GRCGYC 2 cut(s) 1302, 2582
BsaI GGTCTC 2 cut(s) 1230, 3537
BsaWI WCCGGW 2 cut(s) 235, 2933
BsaXI ACNNNNNCTCC 4 cut(s) 10, 40, 339, 369
Bse118I RCCGGY 1 cut(s) 656
Bse3DI GCAATG 5 cut(s) 553, 1634, 2272, 3466, 5086
Bse8I GATNNNNATC 3 cut(s) 3061, 3286, 4735
BseCI ATCGAT 1 cut(s) 4235
BseJI GATNNNNATC 3 cut(s) 3061, 3286, 4735
BseMI GCAATG 5 cut(s) 553, 1634, 2272, 3466, 5086
BseMII CTCAG 8 cut(s) 765, 1078, 2387, 2583, 3205, 3330, 5191, 5563
BseRI GAGGAG 5 cut(s) 342, 360, 363, 405, 2178
BseYI CCCAGC 3 cut(s) 315, 480, 4194
BsgI GTGCAG 7 cut(s) 123, 867, 1522, 1900, 2596, 3349, 3415
Bsh1236I CGCG 2 cut(s) 2443, 4428
BshFI GGCC 5 cut(s) 1192, 1930, 4995, 5331, 5406
BshNI GGYRCC 4 cut(s) 584, 2581, 3083, 5491
BshVI ATCGAT 1 cut(s) 4235
BsiHKAI GWGCWC 5 cut(s) 824, 859, 2597, 2923, 3432
BsiHKCI CYCGRG 2 cut(s) 3588, 5436
BsiSI CCGG 5 cut(s) 236, 657, 1194, 2934, 5407
BslFI GGGAC 6 cut(s) 334, 1110, 1817, 2358, 3192, 3642
BsmAI GTCTC 9 cut(s) 1056, 1082, 1230, 3147, 3537, 3729, 3749, 3749, 5310
BsmBI CGTCTC 2 cut(s) 1082, 5310
BsmFI GGGAC 6 cut(s) 334, 1110, 1817, 2358, 3192, 3642
BsmI GAATGC 3 cut(s) 2024, 2054, 4467
BsnI GGCC 5 cut(s) 1192, 1930, 4995, 5331, 5406
Bso31I GGTCTC 2 cut(s) 1230, 3537
BsoBI CYCGRG 2 cut(s) 3588, 5436
Bsp1286I GDGCHC 6 cut(s) 824, 859, 2479, 2597, 2923, 3432
Bsp1407I TGTACA 3 cut(s) 1487, 1730, 3463
Bsp19I CCATGG 1 cut(s) 3571
BspANI GGCC 5 cut(s) 1192, 1930, 4995, 5331, 5406
BspCNI CTCAG 8 cut(s) 764, 1079, 2386, 2582, 3206, 3329, 5190, 5562
BspDI ATCGAT 1 cut(s) 4235
BspFNI CGCG 2 cut(s) 2443, 4428
BspHI TCATGA 2 cut(s) 80, 4967
BspLI GGNNCC 9 cut(s) 367, 586, 1805, 2583, 2974, 3085, 3180, 4316, 5493
BspMAI CTGCAG 2 cut(s) 4846, 5624
BspMI ACCTGC 1 cut(s) 3200
BspOI GCTAGC 1 cut(s) 165
BspPI GGATC 7 cut(s) 538, 1717, 1812, 2177, 4210, 4738, 4901
BspQI GCTCTTC 2 cut(s) 3420, 5128
BspT107I GGYRCC 4 cut(s) 584, 2581, 3083, 5491
BspTNI GGTCTC 2 cut(s) 1230, 3537
BsrDI GCAATG 5 cut(s) 553, 1634, 2272, 3466, 5086
BsrFI RCCGGY 1 cut(s) 656
BsrGI TGTACA 3 cut(s) 1487, 1730, 3463
BssAI RCCGGY 1 cut(s) 656
BssNAI GTATAC 2 cut(s) 183, 4783
BssNI GRCGYC 2 cut(s) 1302, 2582
BssT1I CCWWGG 4 cut(s) 1556, 3571, 3830, 4748
Bst1107I GTATAC 2 cut(s) 183, 4783
Bst6I CTCTTC 8 cut(s) 163, 330, 1054, 3106, 3420, 4894, 5128, 5481
BstACI GRCGYC 2 cut(s) 1302, 2582
BstAPI GCANNNNNTGC 3 cut(s) 1758, 3402, 5048
BstAUI TGTACA 3 cut(s) 1487, 1730, 3463
BstDSI CCRYGG 1 cut(s) 3571
BstEII GGTNACC 1 cut(s) 1029
BstENI CCTNNNNNAGG 1 cut(s) 2768
BstFNI CGCG 2 cut(s) 2443, 4428
BstH2I RGCGCY 1 cut(s) 2585
BstHHI GCGC 3 cut(s) 944, 2584, 4430
BstMAI GTCTC 9 cut(s) 1056, 1082, 1230, 3147, 3537, 3729, 3749, 3749, 5310
BstNSI RCATGY 6 cut(s) 1254, 1731, 2090, 2102, 3987, 4035
BstPAI GACNNNNGTC 3 cut(s) 2266, 3318, 3741
BstPI GGTNACC 1 cut(s) 1029
BstSFI CTRYAG 6 cut(s) 1456, 4445, 4678, 4842, 5187, 5620
BstUI CGCG 2 cut(s) 2443, 4428
BstV2I GAAGAC 7 cut(s) 1582, 1892, 2779, 3314, 3390, 4830, 5515
BstX2I RGATCY 3 cut(s) 1709, 3287, 4730
BstXI CCANNNNNNTGG 3 cut(s) 224, 2712, 3625
BstYI RGATCY 3 cut(s) 1709, 3287, 4730
BstZ17I GTATAC 2 cut(s) 183, 4783
Bsu15I ATCGAT 1 cut(s) 4235
BsuI GTATCC 1 cut(s) 2238
BsuRI GGCC 5 cut(s) 1192, 1930, 4995, 5331, 5406
BsuTUI ATCGAT 1 cut(s) 4235
BtgI CCRYGG 1 cut(s) 3571
BtrI CACGTC 1 cut(s) 5483
BtsI GCAGTG 4 cut(s) 859, 1610, 1747, 3325
BveI ACCTGC 1 cut(s) 3200
CaiI CAGNNNCTG 2 cut(s) 5150, 5628
CciI TCATGA 2 cut(s) 80, 4967
CfoI GCGC 3 cut(s) 944, 2584, 4430
Cfr10I RCCGGY 1 cut(s) 656
ClaI ATCGAT 1 cut(s) 4235
CseI GACGC 4 cut(s) 1291, 3870, 4563, 4607
DinI GGCGCC 1 cut(s) 2583
DraI TTTAAA 2 cut(s) 2329, 4229
DraIII CACNNNGTG 1 cut(s) 1790
DrdI GACNNNNNNGTC 2 cut(s) 1005, 5553
DseDI GACNNNNNNGTC 2 cut(s) 1005, 5553
EaeI YGGCCR 2 cut(s) 1928, 5329
Eam1104I CTCTTC 8 cut(s) 163, 330, 1054, 3106, 3420, 4894, 5128, 5481
EarI CTCTTC 8 cut(s) 163, 330, 1054, 3106, 3420, 4894, 5128, 5481
EciI GGCGGA 3 cut(s) 31, 1245, 3736
Ecl136II GAGCTC 2 cut(s) 2595, 2921
Eco130I CCWWGG 4 cut(s) 1556, 3571, 3830, 4748
Eco24I GRGCYC 3 cut(s) 2479, 2597, 2923
Eco31I GGTCTC 2 cut(s) 1230, 3537
Eco32I GATATC 1 cut(s) 4508
Eco47I GGWCC 8 cut(s) 366, 1804, 2438, 2849, 3148, 3179, 3827, 5036
Eco53kI GAGCTC 2 cut(s) 2595, 2921
Eco57I CTGAAG 9 cut(s) 187, 852, 985, 2544, 2650, 3460, 4540, 4974, 5289
Eco88I CYCGRG 2 cut(s) 3588, 5436
Eco91I GGTNACC 1 cut(s) 1029
EcoICRI GAGCTC 2 cut(s) 2595, 2921
EcoNI CCTNNNNNAGG 1 cut(s) 2768
EcoO109I RGGNCCY 3 cut(s) 366, 3179, 3827
EcoO65I GGTNACC 1 cut(s) 1029
EcoRI GAATTC 1 cut(s) 5415
EcoRV GATATC 1 cut(s) 4508
EcoT14I CCWWGG 4 cut(s) 1556, 3571, 3830, 4748
EcoT22I ATGCAT 1 cut(s) 3298
EcoT38I GRGCYC 3 cut(s) 2479, 2597, 2923
EgeI GGCGCC 1 cut(s) 2583
EheI GGCGCC 1 cut(s) 2583
ErhI CCWWGG 4 cut(s) 1556, 3571, 3830, 4748
Esp3I CGTCTC 2 cut(s) 1082, 5310
FalI AAGNNNNNCTT 2 cut(s) 3664, 3696
FaqI GGGAC 6 cut(s) 334, 1110, 1817, 2358, 3192, 3642
FauI CCCGC 3 cut(s) 5, 1511, 4393
FauNDI CATATG 2 cut(s) 1652, 3390
FbaI TGATCA 3 cut(s) 2009, 3281, 4652
FblI GTMKAC 3 cut(s) 182, 3770, 4782
FriOI GRGCYC 3 cut(s) 2479, 2597, 2923
GlaI GCGC 3 cut(s) 943, 2583, 4429
GsaI CCCAGC 3 cut(s) 319, 484, 4198
GsuI CTGGAG 4 cut(s) 3601, 3856, 4608, 5406
HaeII RGCGCY 1 cut(s) 2585
HaeIII GGCC 5 cut(s) 1192, 1930, 4995, 5331, 5406
HapII CCGG 5 cut(s) 236, 657, 1194, 2934, 5407
HgaI GACGC 4 cut(s) 1291, 3870, 4563, 4607
HhaI GCGC 3 cut(s) 944, 2584, 4430
Hin1I GRCGYC 2 cut(s) 1302, 2582
Hin6I GCGC 3 cut(s) 942, 2582, 4428
HinP1I GCGC 3 cut(s) 942, 2582, 4428
HincII GTYRAC 5 cut(s) 491, 2074, 3506, 3771, 5590
HindII GTYRAC 5 cut(s) 491, 2074, 3506, 3771, 5590
HindIII AAGCTT 7 cut(s) 1146, 2059, 2526, 4221, 4858, 5541, 5649
HpaI GTTAAC 1 cut(s) 2074
HpaII CCGG 5 cut(s) 236, 657, 1194, 2934, 5407
Hpy99I CGWCG 1 cut(s) 5639
HpyCH4IV ACGT 3 cut(s) 3544, 4015, 5482
HpySE526I ACGT 3 cut(s) 3544, 4015, 5482
Hsp92I GRCGYC 2 cut(s) 1302, 2582
HspAI GCGC 3 cut(s) 942, 2582, 4428
KasI GGCGCC 1 cut(s) 2581
KpnI GGTACC 1 cut(s) 5495
KroI GCCGGC 1 cut(s) 656
KroNI GCCGGC 1 cut(s) 658
Ksp22I TGATCA 3 cut(s) 2009, 3281, 4652
KspAI GTTAAC 1 cut(s) 2074
LguI GCTCTTC 2 cut(s) 3420, 5128
MaeII ACGT 3 cut(s) 3544, 4015, 5482
MfeI CAATTG 7 cut(s) 382, 2013, 2449, 3484, 3973, 4485, 5608
MflI RGATCY 3 cut(s) 1709, 3287, 4730
MhlI GDGCHC 6 cut(s) 824, 859, 2479, 2597, 2923, 3432
MlsI TGGCCA 2 cut(s) 1930, 5331
MluNI TGGCCA 2 cut(s) 1930, 5331
Mly113I GGCGCC 1 cut(s) 2582
MlyI GAGTC 8 cut(s) 12, 719, 743, 1037, 1058, 3308, 5169, 5541
MmeI TCCRAC 3 cut(s) 953, 2140, 4061
Mox20I TGGCCA 2 cut(s) 1930, 5331
Mph1103I ATGCAT 1 cut(s) 3298
MroNI GCCGGC 1 cut(s) 656
MroXI GAANNNNTTC 5 cut(s) 1597, 2029, 2809, 3100, 5353
MscI TGGCCA 2 cut(s) 1930, 5331
MslI CAYNNNNRTG 2 cut(s) 149, 2965
Msp20I TGGCCA 2 cut(s) 1930, 5331
MspA1I CMGCKG 4 cut(s) 801, 1518, 1582, 2522
MspI CCGG 5 cut(s) 236, 657, 1194, 2934, 5407
MunI CAATTG 7 cut(s) 382, 2013, 2449, 3484, 3973, 4485, 5608
Mva1269I GAATGC 3 cut(s) 2024, 2054, 4467
MvnI CGCG 2 cut(s) 2443, 4428
NaeI GCCGGC 1 cut(s) 658
NarI GGCGCC 1 cut(s) 2582
NciI CCSGG 2 cut(s) 1194, 5408
NcoI CCATGG 1 cut(s) 3571
NdeI CATATG 2 cut(s) 1652, 3390
NgoMIV GCCGGC 1 cut(s) 656
NheI GCTAGC 1 cut(s) 161
NlaIV GGNNCC 9 cut(s) 367, 586, 1805, 2583, 2974, 3085, 3180, 4316, 5493
NmeAIII GCCGAG 1 cut(s) 3515
NmuCI GTSAC 7 cut(s) 1007, 1029, 3242, 4058, 4214, 4422, 5172
NsiI ATGCAT 1 cut(s) 3298
NspI RCATGY 6 cut(s) 1254, 1731, 2090, 2102, 3987, 4035
OliI CACNNNNGTG 1 cut(s) 149
PaeI GCATGC 1 cut(s) 2102
PaeR7I CTCGAG 2 cut(s) 3588, 5436
PagI TCATGA 2 cut(s) 80, 4967
PasI CCCWGGG 1 cut(s) 5156
PciI ACATGT 2 cut(s) 2086, 4031
PciSI GCTCTTC 2 cut(s) 3420, 5128
PctI GAATGC 3 cut(s) 2024, 2054, 4467
PdiI GCCGGC 1 cut(s) 658
PdmI GAANNNNTTC 5 cut(s) 1597, 2029, 2809, 3100, 5353
PflFI GACNNNGTC 1 cut(s) 4080
PflMI CCANNNNNTGG 2 cut(s) 4301, 5107
PfoI TCCNGGA 1 cut(s) 5237
PleI GAGTC 8 cut(s) 11, 719, 743, 1037, 1058, 3308, 5169, 5541
PluTI GGCGCC 1 cut(s) 2585
PpsI GAGTC 8 cut(s) 11, 719, 743, 1037, 1058, 3308, 5169, 5541
PpuMI RGGWCCY 3 cut(s) 366, 3179, 3827
PscI ACATGT 2 cut(s) 2086, 4031
PshAI GACNNNNGTC 3 cut(s) 2266, 3318, 3741
PshBI ATTAAT 1 cut(s) 2491
PsiI TTATAA 2 cut(s) 5562, 5647
Psp124BI GAGCTC 2 cut(s) 2597, 2923
Psp1406I AACGTT 1 cut(s) 3544
Psp5II RGGWCCY 3 cut(s) 366, 3179, 3827
PspEI GGTNACC 1 cut(s) 1029
PspFI CCCAGC 3 cut(s) 315, 480, 4194
PspN4I GGNNCC 9 cut(s) 367, 586, 1805, 2583, 2974, 3085, 3180, 4316, 5493
PspPPI RGGWCCY 3 cut(s) 366, 3179, 3827
PspXI VCTCGAGB 1 cut(s) 3588
PsrI GAACNNNNNNTAC 2 cut(s) 4867, 4899
PstI CTGCAG 2 cut(s) 4846, 5624
PstNI CAGNNNCTG 2 cut(s) 5150, 5628
PsuI RGATCY 3 cut(s) 1709, 3287, 4730
PsyI GACNNNGTC 1 cut(s) 4080
PvuII CAGCTG 1 cut(s) 2522
RseI CAYNNNNRTG 2 cut(s) 149, 2965
SacI GAGCTC 2 cut(s) 2597, 2923
SalI GTCGAC 1 cut(s) 3769
SapI GCTCTTC 2 cut(s) 3420, 5128
SchI GAGTC 8 cut(s) 12, 719, 743, 1037, 1058, 3308, 5169, 5541
SduI GDGCHC 6 cut(s) 824, 859, 2479, 2597, 2923, 3432
SfcI CTRYAG 6 cut(s) 1456, 4445, 4678, 4842, 5187, 5620
SfoI GGCGCC 1 cut(s) 2583
Sfr274I CTCGAG 2 cut(s) 3588, 5436
SinI GGWCC 8 cut(s) 366, 1804, 2438, 2849, 3148, 3179, 3827, 5036
SlaI CTCGAG 2 cut(s) 3588, 5436
SmiMI CAYNNNNRTG 2 cut(s) 149, 2965
SmlI CTYRAG 5 cut(s) 1493, 3588, 4661, 4855, 5436
SmoI CTYRAG 5 cut(s) 1493, 3588, 4661, 4855, 5436
SphI GCATGC 1 cut(s) 2102
SspDI GGCGCC 1 cut(s) 2581
SspI AATATT 3 cut(s) 809, 3030, 3114
SstI GAGCTC 2 cut(s) 2597, 2923
StyI CCWWGG 4 cut(s) 1556, 3571, 3830, 4748
TaiI ACGT 3 cut(s) 3547, 4018, 5485
TaqII GACCGA 1 cut(s) 1821
TatI WGTACW 5 cut(s) 297, 922, 1487, 1730, 3463
TauI GCSGC 1 cut(s) 2405
TseFI GTSAC 7 cut(s) 1007, 1029, 3242, 4058, 4214, 4422, 5172
Tsp45I GTSAC 7 cut(s) 1007, 1029, 3242, 4058, 4214, 4422, 5172
TspGWI ACGGA 4 cut(s) 3111, 3250, 3668, 5334
Tth111I GACNNNGTC 1 cut(s) 4080
Van91I CCANNNNNTGG 2 cut(s) 4301, 5107
VpaK11BI GGWCC 8 cut(s) 366, 1804, 2438, 2849, 3148, 3179, 3827, 5036
VspI ATTAAT 1 cut(s) 2491
XagI CCTNNNNNAGG 1 cut(s) 2768
XapI RAATTY 6 cut(s) 1165, 2382, 2913, 3519, 4070, 5415
XbaI TCTAGA 2 cut(s) 3747, 5004
XceI RCATGY 6 cut(s) 1254, 1731, 2090, 2102, 3987, 4035
XcmI CCANNNNNNNNNTGG 3 cut(s) 3708, 4326, 5235
XhoI CTCGAG 2 cut(s) 3588, 5436
XmiI GTMKAC 3 cut(s) 182, 3770, 4782
XmnI GAANNNNTTC 5 cut(s) 1597, 2029, 2809, 3100, 5353
Zsp2I ATGCAT 1 cut(s) 3298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.