U5 small nuclear ribonucleoprotein 200 kDa
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| BRR2_plug | PF21188 | 109 - 171 | 2.1e-06 | Pre-mRNA-splicing helicase BRR2 plug domain |
| Helicase_PWI | PF18149 | 248 - 358 | 2.2e-29 | N-terminal helicase PWI domain |
| ResIII | PF04851 | 477 - 654 | 2.3e-13 | Type III restriction enzyme, res subunit |
| DEAD | PF00270 | 480 - 658 | 8e-33 | DEAD/DEAH box helicase |
| Helicase_C | PF00271 | 758 - 856 | 2.8e-10 | Helicase conserved C-terminal domain |
| WHD_SNRNP200 | PF23445 | 887 - 963 | 1.5e-21 | Winged Helix-turn-helix domain |
| Sec63 | PF02889 | 979 - 1282 | 7.9e-97 | Sec63 Brl domain |
| ResIII | PF04851 | 1325 - 1470 | 2.2e-09 | Type III restriction enzyme, res subunit |
| DEAD | PF00270 | 1328 - 1501 | 1.8e-25 | DEAD/DEAH box helicase |
| WHD_SNRNP200 | PF23445 | 1719 - 1800 | 1.9e-33 | Winged Helix-turn-helix domain |
| Sec63 | PF02889 | 1806 - 2125 | 5.7e-59 | Sec63 Brl domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 6239, 6324 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 1682, 6230 |
| Acc36I | ACCTGC | 1 cut(s) | 3877 |
| Acc65I | GGTACC | 1 cut(s) | 6168 |
| AccB1I | GGYRCC | 7 cut(s) | 201, 249, 401, 1261, 3258, 3760, 6168 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 4978, 5784 |
| AccBSI | CCGCTC | 1 cut(s) | 20 |
| AccI | GTMKAC | 3 cut(s) | 859, 4447, 5459 |
| AccII | CGCG | 6 cut(s) | 32, 34, 144, 210, 3120, 5105 |
| AclI | AACGTT | 1 cut(s) | 4221 |
| AclWI | GGATC | 7 cut(s) | 1215, 2394, 2489, 2854, 4887, 5415, 5578 |
| AcoI | YGGCCR | 2 cut(s) | 2605, 6006 |
| AcsI | RAATTY | 8 cut(s) | 61, 466, 475, 1842, 3059, 4196, 4747, 6092 |
| AcuI | CTGAAG | 9 cut(s) | 864, 1529, 1662, 3221, 3327, 4137, 5217, 5651, 5966 |
| AcvI | CACGTG | 3 cut(s) | 104, 115, 355 |
| AcyI | GRCGYC | 6 cut(s) | 83, 250, 297, 402, 1979, 3259 |
| AdeI | CACNNNGTG | 1 cut(s) | 2467 |
| AflIII | ACRYGT | 2 cut(s) | 2763, 4708 |
| AhlI | ACTAGT | 1 cut(s) | 4348 |
| AjiI | CACGTC | 1 cut(s) | 6160 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 2694, 2726, 3360, 3392 |
| AleI | CACNNNNGTG | 1 cut(s) | 826 |
| Alw21I | GWGCWC | 6 cut(s) | 276, 1501, 1536, 3274, 3600, 4109 |
| AlwI | GGATC | 7 cut(s) | 1215, 2394, 2489, 2854, 4887, 5415, 5578 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 5827, 6305 |
| Ama87I | CYCGRG | 4 cut(s) | 214, 327, 4265, 6113 |
| AoxI | GGCC | 8 cut(s) | 191, 308, 798, 1867, 2605, 5670, 6006, 6081 |
| ApoI | RAATTY | 8 cut(s) | 61, 466, 475, 1842, 3059, 4196, 4747, 6092 |
| AseI | ATTAAT | 1 cut(s) | 3168 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 2274, 2706, 3486, 3777, 6030 |
| Asp718I | GGTACC | 1 cut(s) | 6168 |
| AspLEI | GCGC | 6 cut(s) | 34, 252, 404, 1621, 3261, 5107 |
| AsuC2I | CCSGG | 5 cut(s) | 224, 328, 329, 1871, 6085 |
| AsuNHI | GCTAGC | 1 cut(s) | 838 |
| AvaI | CYCGRG | 4 cut(s) | 214, 327, 4265, 6113 |
| AvaII | GGWCC | 9 cut(s) | 73, 1043, 2481, 3115, 3526, 3825, 3856, 4504, 5713 |
| BaeGI | GKGCMC | 1 cut(s) | 120 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 633, 666 |
| BalI | TGGCCA | 2 cut(s) | 2607, 6008 |
| BanI | GGYRCC | 7 cut(s) | 201, 249, 401, 1261, 3258, 3760, 6168 |
| BanII | GRGCYC | 3 cut(s) | 3156, 3274, 3600 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 5120, 5152 |
| BbrPI | CACGTG | 3 cut(s) | 104, 115, 355 |
| BbsI | GAAGAC | 8 cut(s) | 297, 320, 2259, 2569, 3991, 4067, 5507, 6192 |
| Bbv12I | GWGCWC | 6 cut(s) | 276, 1501, 1536, 3274, 3600, 4109 |
| BceAI | ACGGC | 7 cut(s) | 237, 263, 310, 415, 3212, 4945, 6330 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1214, 1248, 3140, 3174 |
| BciVI | GTATCC | 1 cut(s) | 2915 |
| BclI | TGATCA | 5 cut(s) | 499, 525, 2686, 3958, 5329 |
| BcnI | CCSGG | 5 cut(s) | 224, 328, 329, 1871, 6085 |
| BcuI | ACTAGT | 1 cut(s) | 4348 |
| BfmI | CTRYAG | 6 cut(s) | 2133, 5122, 5355, 5519, 5864, 6297 |
| BfoI | RGCGCY | 3 cut(s) | 253, 405, 3262 |
| BfuAI | ACCTGC | 1 cut(s) | 3877 |
| BfuI | GTATCC | 1 cut(s) | 2915 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 199 |
| BglII | AGATCT | 1 cut(s) | 3964 |
| Bme18I | GGWCC | 9 cut(s) | 73, 1043, 2481, 3115, 3526, 3825, 3856, 4504, 5713 |
| BmeT110I | CYCGRG | 4 cut(s) | 214, 327, 4265, 6113 |
| BmgBI | CACGTC | 1 cut(s) | 6160 |
| BmrI | ACTGGG | 7 cut(s) | 784, 1515, 3150, 4245, 4990, 6136, 6272 |
| BmtI | GCTAGC | 1 cut(s) | 842 |
| BmuI | ACTGGG | 7 cut(s) | 784, 1515, 3150, 4245, 4990, 6136, 6272 |
| BoxI | GACNNNNGTC | 4 cut(s) | 216, 2943, 3995, 4418 |
| BpiI | GAAGAC | 8 cut(s) | 297, 320, 2259, 2569, 3991, 4067, 5507, 6192 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 4194, 4226 |
| BpmI | CTGGAG | 4 cut(s) | 4278, 4533, 5285, 6083 |
| Bpu10I | CCTNAGC | 1 cut(s) | 3821 |
| BpuEI | CTTGAG | 3 cut(s) | 2155, 5323, 5517 |
| BpuMI | CCSGG | 5 cut(s) | 224, 328, 329, 1871, 6085 |
| BsaAI | YACGTR | 3 cut(s) | 104, 115, 355 |
| BsaBI | GATNNNNATC | 3 cut(s) | 3738, 3963, 5412 |
| BsaHI | GRCGYC | 6 cut(s) | 83, 250, 297, 402, 1979, 3259 |
| BsaI | GGTCTC | 3 cut(s) | 317, 1907, 4214 |
| BsaWI | WCCGGW | 2 cut(s) | 912, 3610 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 585, 615, 687, 717, 1016, 1046 |
| Bse118I | RCCGGY | 2 cut(s) | 382, 1333 |
| Bse3DI | GCAATG | 5 cut(s) | 1230, 2311, 2949, 4143, 5763 |
| Bse8I | GATNNNNATC | 3 cut(s) | 3738, 3963, 5412 |
| BseJI | GATNNNNATC | 3 cut(s) | 3738, 3963, 5412 |
| BseMI | GCAATG | 5 cut(s) | 1230, 2311, 2949, 4143, 5763 |
| BseSI | GKGCMC | 1 cut(s) | 120 |
| BseYI | CCCAGC | 3 cut(s) | 119, 992, 1157 |
| BsgI | GTGCAG | 7 cut(s) | 800, 1544, 2199, 2577, 3273, 4026, 4092 |
| Bsh1236I | CGCG | 6 cut(s) | 32, 34, 144, 210, 3120, 5105 |
| Bsh1285I | CGRYCG | 1 cut(s) | 59 |
| BshFI | GGCC | 8 cut(s) | 193, 310, 800, 1869, 2607, 5672, 6008, 6083 |
| BshNI | GGYRCC | 7 cut(s) | 201, 249, 401, 1261, 3258, 3760, 6168 |
| BsiEI | CGRYCG | 1 cut(s) | 59 |
| BsiHKAI | GWGCWC | 6 cut(s) | 276, 1501, 1536, 3274, 3600, 4109 |
| BsiHKCI | CYCGRG | 4 cut(s) | 214, 327, 4265, 6113 |
| BsiSI | CCGG | 8 cut(s) | 224, 328, 383, 913, 1334, 1871, 3611, 6084 |
| BsiWI | CGTACG | 1 cut(s) | 336 |
| BslFI | GGGAC | 7 cut(s) | 204, 1011, 1787, 2494, 3035, 3869, 4319 |
| BsmBI | CGTCTC | 2 cut(s) | 1759, 5987 |
| BsmFI | GGGAC | 7 cut(s) | 204, 1011, 1787, 2494, 3035, 3869, 4319 |
| BsmI | GAATGC | 3 cut(s) | 2701, 2731, 5144 |
| BsnI | GGCC | 8 cut(s) | 193, 310, 800, 1869, 2607, 5672, 6008, 6083 |
| Bso31I | GGTCTC | 3 cut(s) | 317, 1907, 4214 |
| BsoBI | CYCGRG | 4 cut(s) | 214, 327, 4265, 6113 |
| Bsp1286I | GDGCHC | 8 cut(s) | 120, 276, 1501, 1536, 3156, 3274, 3600, 4109 |
| Bsp1407I | TGTACA | 3 cut(s) | 2164, 2407, 4140 |
| Bsp19I | CCATGG | 1 cut(s) | 4248 |
| BspANI | GGCC | 8 cut(s) | 193, 310, 800, 1869, 2607, 5672, 6008, 6083 |
| BspFNI | CGCG | 6 cut(s) | 32, 34, 144, 210, 3120, 5105 |
| BspHI | TCATGA | 2 cut(s) | 757, 4932 |
| BspMAI | CTGCAG | 2 cut(s) | 5523, 6301 |
| BspMI | ACCTGC | 1 cut(s) | 3877 |
| BspOI | GCTAGC | 1 cut(s) | 842 |
| BspPI | GGATC | 7 cut(s) | 1215, 2394, 2489, 2854, 4887, 5415, 5578 |
| BspQI | GCTCTTC | 2 cut(s) | 4097, 5805 |
| BspT107I | GGYRCC | 7 cut(s) | 201, 249, 401, 1261, 3258, 3760, 6168 |
| BspTNI | GGTCTC | 3 cut(s) | 317, 1907, 4214 |
| BsrBI | CCGCTC | 1 cut(s) | 20 |
| BsrDI | GCAATG | 5 cut(s) | 1230, 2311, 2949, 4143, 5763 |
| BsrFI | RCCGGY | 2 cut(s) | 382, 1333 |
| BsrGI | TGTACA | 3 cut(s) | 2164, 2407, 4140 |
| BssAI | RCCGGY | 2 cut(s) | 382, 1333 |
| BssNAI | GTATAC | 2 cut(s) | 860, 5460 |
| BssNI | GRCGYC | 6 cut(s) | 83, 250, 297, 402, 1979, 3259 |
| BssT1I | CCWWGG | 4 cut(s) | 2233, 4248, 4507, 5425 |
| Bst1107I | GTATAC | 2 cut(s) | 860, 5460 |
| BstACI | GRCGYC | 6 cut(s) | 83, 250, 297, 402, 1979, 3259 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 2435, 4079, 5725 |
| BstAUI | TGTACA | 3 cut(s) | 2164, 2407, 4140 |
| BstBAI | YACGTR | 3 cut(s) | 104, 115, 355 |
| BstDSI | CCRYGG | 2 cut(s) | 142, 4248 |
| BstEII | GGTNACC | 1 cut(s) | 1706 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3445 |
| BstFNI | CGCG | 6 cut(s) | 32, 34, 144, 210, 3120, 5105 |
| BstH2I | RGCGCY | 3 cut(s) | 253, 405, 3262 |
| BstHHI | GCGC | 6 cut(s) | 34, 252, 404, 1621, 3261, 5107 |
| BstMCI | CGRYCG | 1 cut(s) | 59 |
| BstNSI | RCATGY | 7 cut(s) | 1931, 2408, 2767, 2779, 4644, 4664, 4712 |
| BstPAI | GACNNNNGTC | 4 cut(s) | 216, 2943, 3995, 4418 |
| BstPI | GGTNACC | 1 cut(s) | 1706 |
| BstSFI | CTRYAG | 6 cut(s) | 2133, 5122, 5355, 5519, 5864, 6297 |
| BstSLI | GKGCMC | 1 cut(s) | 120 |
| BstUI | CGCG | 6 cut(s) | 32, 34, 144, 210, 3120, 5105 |
| BstV2I | GAAGAC | 8 cut(s) | 297, 320, 2259, 2569, 3991, 4067, 5507, 6192 |
| BstX2I | RGATCY | 3 cut(s) | 2386, 3964, 5407 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 901, 3389, 4302 |
| BstYI | RGATCY | 3 cut(s) | 2386, 3964, 5407 |
| BstZ17I | GTATAC | 2 cut(s) | 860, 5460 |
| BsuI | GTATCC | 1 cut(s) | 2915 |
| BsuRI | GGCC | 8 cut(s) | 193, 310, 800, 1869, 2607, 5672, 6008, 6083 |
| BtgI | CCRYGG | 2 cut(s) | 142, 4248 |
| BtgZI | GCGATG | 1 cut(s) | 359 |
| BtrI | CACGTC | 1 cut(s) | 6160 |
| BtsI | GCAGTG | 6 cut(s) | 276, 1536, 2287, 2424, 4002, 4644 |
| BveI | ACCTGC | 1 cut(s) | 3877 |
| CaiI | CAGNNNCTG | 2 cut(s) | 5827, 6305 |
| CciI | TCATGA | 2 cut(s) | 757, 4932 |
| CfoI | GCGC | 6 cut(s) | 34, 252, 404, 1621, 3261, 5107 |
| Cfr10I | RCCGGY | 2 cut(s) | 382, 1333 |
| Cfr42I | CCGCGG | 1 cut(s) | 145 |
| Cfr9I | CCCGGG | 1 cut(s) | 327 |
| CseI | GACGC | 5 cut(s) | 72, 286, 1968, 4547, 5284 |
| DinI | GGCGCC | 3 cut(s) | 251, 403, 3260 |
| DraI | TTTAAA | 2 cut(s) | 3006, 4906 |
| DraIII | CACNNNGTG | 1 cut(s) | 2467 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 1682, 6230 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 1682, 6230 |
| EaeI | YGGCCR | 2 cut(s) | 2605, 6006 |
| EciI | GGCGGA | 3 cut(s) | 708, 1922, 4413 |
| Ecl136II | GAGCTC | 2 cut(s) | 3272, 3598 |
| Eco130I | CCWWGG | 4 cut(s) | 2233, 4248, 4507, 5425 |
| Eco147I | AGGCCT | 1 cut(s) | 800 |
| Eco24I | GRGCYC | 3 cut(s) | 3156, 3274, 3600 |
| Eco31I | GGTCTC | 3 cut(s) | 317, 1907, 4214 |
| Eco32I | GATATC | 1 cut(s) | 5185 |
| Eco47I | GGWCC | 9 cut(s) | 73, 1043, 2481, 3115, 3526, 3825, 3856, 4504, 5713 |
| Eco53kI | GAGCTC | 2 cut(s) | 3272, 3598 |
| Eco57I | CTGAAG | 9 cut(s) | 864, 1529, 1662, 3221, 3327, 4137, 5217, 5651, 5966 |
| Eco72I | CACGTG | 3 cut(s) | 104, 115, 355 |
| Eco88I | CYCGRG | 4 cut(s) | 214, 327, 4265, 6113 |
| Eco91I | GGTNACC | 1 cut(s) | 1706 |
| EcoICRI | GAGCTC | 2 cut(s) | 3272, 3598 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3445 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1043, 3856, 4504 |
| EcoO65I | GGTNACC | 1 cut(s) | 1706 |
| EcoRI | GAATTC | 3 cut(s) | 61, 475, 6092 |
| EcoRV | GATATC | 1 cut(s) | 5185 |
| EcoT14I | CCWWGG | 4 cut(s) | 2233, 4248, 4507, 5425 |
| EcoT22I | ATGCAT | 1 cut(s) | 3975 |
| EcoT38I | GRGCYC | 3 cut(s) | 3156, 3274, 3600 |
| EgeI | GGCGCC | 3 cut(s) | 251, 403, 3260 |
| EheI | GGCGCC | 3 cut(s) | 251, 403, 3260 |
| ErhI | CCWWGG | 4 cut(s) | 2233, 4248, 4507, 5425 |
| Esp3I | CGTCTC | 2 cut(s) | 1759, 5987 |
| FaqI | GGGAC | 7 cut(s) | 204, 1011, 1787, 2494, 3035, 3869, 4319 |
| FauI | CCCGC | 3 cut(s) | 682, 2188, 5070 |
| FauNDI | CATATG | 2 cut(s) | 2329, 4067 |
| FbaI | TGATCA | 5 cut(s) | 499, 525, 2686, 3958, 5329 |
| FblI | GTMKAC | 3 cut(s) | 859, 4447, 5459 |
| FriOI | GRGCYC | 3 cut(s) | 3156, 3274, 3600 |
| GlaI | GCGC | 6 cut(s) | 33, 251, 403, 1620, 3260, 5106 |
| GsaI | CCCAGC | 3 cut(s) | 123, 996, 1161 |
| GsuI | CTGGAG | 4 cut(s) | 4278, 4533, 5285, 6083 |
| HaeII | RGCGCY | 3 cut(s) | 253, 405, 3262 |
| HaeIII | GGCC | 8 cut(s) | 193, 310, 800, 1869, 2607, 5672, 6008, 6083 |
| HapII | CCGG | 8 cut(s) | 224, 328, 383, 913, 1334, 1871, 3611, 6084 |
| HgaI | GACGC | 5 cut(s) | 72, 286, 1968, 4547, 5284 |
| HhaI | GCGC | 6 cut(s) | 34, 252, 404, 1621, 3261, 5107 |
| Hin1I | GRCGYC | 6 cut(s) | 83, 250, 297, 402, 1979, 3259 |
| Hin6I | GCGC | 6 cut(s) | 32, 250, 402, 1619, 3259, 5105 |
| HinP1I | GCGC | 6 cut(s) | 32, 250, 402, 1619, 3259, 5105 |
| HincII | GTYRAC | 4 cut(s) | 2751, 4183, 4448, 6267 |
| HindII | GTYRAC | 4 cut(s) | 2751, 4183, 4448, 6267 |
| HindIII | AAGCTT | 8 cut(s) | 163, 1823, 2736, 3203, 4898, 5535, 6218, 6326 |
| HpaI | GTTAAC | 1 cut(s) | 2751 |
| HpaII | CCGG | 8 cut(s) | 224, 328, 383, 913, 1334, 1871, 3611, 6084 |
| Hpy99I | CGWCG | 6 cut(s) | 286, 302, 413, 554, 557, 6316 |
| HpyCH4IV | ACGT | 6 cut(s) | 103, 114, 354, 4221, 4692, 6159 |
| HpySE526I | ACGT | 6 cut(s) | 103, 114, 354, 4221, 4692, 6159 |
| Hsp92I | GRCGYC | 6 cut(s) | 83, 250, 297, 402, 1979, 3259 |
| HspAI | GCGC | 6 cut(s) | 32, 250, 402, 1619, 3259, 5105 |
| KasI | GGCGCC | 3 cut(s) | 249, 401, 3258 |
| KpnI | GGTACC | 1 cut(s) | 6172 |
| KroI | GCCGGC | 2 cut(s) | 382, 1333 |
| KroNI | GCCGGC | 2 cut(s) | 384, 1335 |
| Ksp22I | TGATCA | 5 cut(s) | 499, 525, 2686, 3958, 5329 |
| KspAI | GTTAAC | 1 cut(s) | 2751 |
| KspI | CCGCGG | 1 cut(s) | 145 |
| LguI | GCTCTTC | 2 cut(s) | 4097, 5805 |
| MaeII | ACGT | 6 cut(s) | 103, 114, 354, 4221, 4692, 6159 |
| MbiI | CCGCTC | 1 cut(s) | 20 |
| MfeI | CAATTG | 7 cut(s) | 1059, 2690, 3126, 4161, 4650, 5162, 6285 |
| MflI | RGATCY | 3 cut(s) | 2386, 3964, 5407 |
| MhlI | GDGCHC | 8 cut(s) | 120, 276, 1501, 1536, 3156, 3274, 3600, 4109 |
| MlsI | TGGCCA | 2 cut(s) | 2607, 6008 |
| MluNI | TGGCCA | 2 cut(s) | 2607, 6008 |
| Mly113I | GGCGCC | 3 cut(s) | 250, 402, 3259 |
| MmeI | TCCRAC | 5 cut(s) | 114, 1630, 2817, 4738, 5231 |
| Mox20I | TGGCCA | 2 cut(s) | 2607, 6008 |
| Mph1103I | ATGCAT | 1 cut(s) | 3975 |
| MroNI | GCCGGC | 2 cut(s) | 382, 1333 |
| MroXI | GAANNNNTTC | 5 cut(s) | 2274, 2706, 3486, 3777, 6030 |
| MscI | TGGCCA | 2 cut(s) | 2607, 6008 |
| MslI | CAYNNNNRTG | 2 cut(s) | 826, 3642 |
| Msp20I | TGGCCA | 2 cut(s) | 2607, 6008 |
| MspA1I | CMGCKG | 7 cut(s) | 52, 123, 144, 367, 1478, 2195, 2259 |
| MspI | CCGG | 8 cut(s) | 224, 328, 383, 913, 1334, 1871, 3611, 6084 |
| MunI | CAATTG | 7 cut(s) | 1059, 2690, 3126, 4161, 4650, 5162, 6285 |
| Mva1269I | GAATGC | 3 cut(s) | 2701, 2731, 5144 |
| MvnI | CGCG | 6 cut(s) | 32, 34, 144, 210, 3120, 5105 |
| NaeI | GCCGGC | 2 cut(s) | 384, 1335 |
| NarI | GGCGCC | 3 cut(s) | 250, 402, 3259 |
| NciI | CCSGG | 5 cut(s) | 224, 328, 329, 1871, 6085 |
| NcoI | CCATGG | 1 cut(s) | 4248 |
| NdeI | CATATG | 2 cut(s) | 2329, 4067 |
| NgoMIV | GCCGGC | 2 cut(s) | 382, 1333 |
| NheI | GCTAGC | 1 cut(s) | 838 |
| NmeAIII | GCCGAG | 1 cut(s) | 4192 |
| NmuCI | GTSAC | 9 cut(s) | 110, 374, 1684, 1706, 3919, 4735, 4891, 5099, 5849 |
| NsiI | ATGCAT | 1 cut(s) | 3975 |
| NspI | RCATGY | 7 cut(s) | 1931, 2408, 2767, 2779, 4644, 4664, 4712 |
| OliI | CACNNNNGTG | 1 cut(s) | 826 |
| PaeI | GCATGC | 1 cut(s) | 2779 |
| PaeR7I | CTCGAG | 2 cut(s) | 4265, 6113 |
| PagI | TCATGA | 2 cut(s) | 757, 4932 |
| PasI | CCCWGGG | 1 cut(s) | 5833 |
| PceI | AGGCCT | 1 cut(s) | 800 |
| PciI | ACATGT | 2 cut(s) | 2763, 4708 |
| PciSI | GCTCTTC | 2 cut(s) | 4097, 5805 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 405 |
| PctI | GAATGC | 3 cut(s) | 2701, 2731, 5144 |
| PdiI | GCCGGC | 2 cut(s) | 384, 1335 |
| PdmI | GAANNNNTTC | 5 cut(s) | 2274, 2706, 3486, 3777, 6030 |
| Pfl23II | CGTACG | 1 cut(s) | 336 |
| PflFI | GACNNNGTC | 2 cut(s) | 296, 4757 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 4978, 5784 |
| PfoI | TCCNGGA | 1 cut(s) | 5914 |
| Ple19I | CGATCG | 1 cut(s) | 59 |
| PluTI | GGCGCC | 3 cut(s) | 253, 405, 3262 |
| PmaCI | CACGTG | 3 cut(s) | 104, 115, 355 |
| PmlI | CACGTG | 3 cut(s) | 104, 115, 355 |
| Ppu21I | YACGTR | 3 cut(s) | 104, 115, 355 |
| PpuMI | RGGWCCY | 3 cut(s) | 1043, 3856, 4504 |
| PscI | ACATGT | 2 cut(s) | 2763, 4708 |
| PshAI | GACNNNNGTC | 4 cut(s) | 216, 2943, 3995, 4418 |
| PshBI | ATTAAT | 1 cut(s) | 3168 |
| PsiI | TTATAA | 2 cut(s) | 6239, 6324 |
| Psp124BI | GAGCTC | 2 cut(s) | 3274, 3600 |
| Psp1406I | AACGTT | 1 cut(s) | 4221 |
| Psp5II | RGGWCCY | 3 cut(s) | 1043, 3856, 4504 |
| PspCI | CACGTG | 3 cut(s) | 104, 115, 355 |
| PspEI | GGTNACC | 1 cut(s) | 1706 |
| PspFI | CCCAGC | 3 cut(s) | 119, 992, 1157 |
| PspLI | CGTACG | 1 cut(s) | 336 |
| PspPPI | RGGWCCY | 3 cut(s) | 1043, 3856, 4504 |
| PspXI | VCTCGAGB | 1 cut(s) | 4265 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 5544, 5576 |
| PstI | CTGCAG | 2 cut(s) | 5523, 6301 |
| PstNI | CAGNNNCTG | 2 cut(s) | 5827, 6305 |
| PsuI | RGATCY | 3 cut(s) | 2386, 3964, 5407 |
| PsyI | GACNNNGTC | 2 cut(s) | 296, 4757 |
| PvuI | CGATCG | 1 cut(s) | 59 |
| PvuII | CAGCTG | 2 cut(s) | 52, 367 |
| RseI | CAYNNNNRTG | 2 cut(s) | 826, 3642 |
| SacI | GAGCTC | 2 cut(s) | 3274, 3600 |
| SacII | CCGCGG | 1 cut(s) | 145 |
| SalI | GTCGAC | 1 cut(s) | 4446 |
| SapI | GCTCTTC | 2 cut(s) | 4097, 5805 |
| SduI | GDGCHC | 8 cut(s) | 120, 276, 1501, 1536, 3156, 3274, 3600, 4109 |
| SfcI | CTRYAG | 6 cut(s) | 2133, 5122, 5355, 5519, 5864, 6297 |
| SfoI | GGCGCC | 3 cut(s) | 251, 403, 3260 |
| Sfr274I | CTCGAG | 2 cut(s) | 4265, 6113 |
| Sfr303I | CCGCGG | 1 cut(s) | 145 |
| SgrBI | CCGCGG | 1 cut(s) | 145 |
| SinI | GGWCC | 9 cut(s) | 73, 1043, 2481, 3115, 3526, 3825, 3856, 4504, 5713 |
| SlaI | CTCGAG | 2 cut(s) | 4265, 6113 |
| SmaI | CCCGGG | 1 cut(s) | 329 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 826, 3642 |
| SmlI | CTYRAG | 5 cut(s) | 2170, 4265, 5338, 5532, 6113 |
| SmoI | CTYRAG | 5 cut(s) | 2170, 4265, 5338, 5532, 6113 |
| SpeI | ACTAGT | 1 cut(s) | 4348 |
| SphI | GCATGC | 1 cut(s) | 2779 |
| SseBI | AGGCCT | 1 cut(s) | 800 |
| SspDI | GGCGCC | 3 cut(s) | 249, 401, 3258 |
| SspI | AATATT | 3 cut(s) | 1486, 3707, 3791 |
| SstI | GAGCTC | 2 cut(s) | 3274, 3600 |
| StuI | AGGCCT | 1 cut(s) | 800 |
| StyI | CCWWGG | 4 cut(s) | 2233, 4248, 4507, 5425 |
| TaiI | ACGT | 6 cut(s) | 106, 117, 357, 4224, 4695, 6162 |
| TaqII | GACCGA | 1 cut(s) | 2498 |
| TatI | WGTACW | 5 cut(s) | 974, 1599, 2164, 2407, 4140 |
| TauI | GCSGC | 5 cut(s) | 126, 147, 210, 407, 3082 |
| TseFI | GTSAC | 9 cut(s) | 110, 374, 1684, 1706, 3919, 4735, 4891, 5099, 5849 |
| Tsp45I | GTSAC | 9 cut(s) | 110, 374, 1684, 1706, 3919, 4735, 4891, 5099, 5849 |
| TspGWI | ACGGA | 4 cut(s) | 299, 3788, 4345, 6011 |
| TspMI | CCCGGG | 1 cut(s) | 327 |
| Tth111I | GACNNNGTC | 2 cut(s) | 296, 4757 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 4978, 5784 |
| VpaK11BI | GGWCC | 9 cut(s) | 73, 1043, 2481, 3115, 3526, 3825, 3856, 4504, 5713 |
| VspI | ATTAAT | 1 cut(s) | 3168 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3445 |
| XapI | RAATTY | 8 cut(s) | 61, 466, 475, 1842, 3059, 4196, 4747, 6092 |
| XbaI | TCTAGA | 2 cut(s) | 4424, 5681 |
| XceI | RCATGY | 7 cut(s) | 1931, 2408, 2767, 2779, 4644, 4664, 4712 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 4385, 5003, 5912 |
| XhoI | CTCGAG | 2 cut(s) | 4265, 6113 |
| XmaI | CCCGGG | 1 cut(s) | 327 |
| XmiI | GTMKAC | 3 cut(s) | 859, 4447, 5459 |
| XmnI | GAANNNNTTC | 5 cut(s) | 2274, 2706, 3486, 3777, 6030 |
| Zsp2I | ATGCAT | 1 cut(s) | 3975 |