pycom12g23600

U5 small nuclear ribonucleoprotein 200 kDa

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Forward (+)
24133396 .. 24134718
1323 bp
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UTR
Exon/CDS
Intron
pycom12g23600.1

Sequence Viewer

Length: 1323 bp
ATGTTGCAGCTGGGTCCGGATTTGGCTGCAATTGTAGAACAGTTGCATGCCACAAGGGCTAGTGCAAAGGAGAGGCAAAAGAACTTGGAGAAGAGTATTAGAGAAGAGGCTCGCAGGTTGAAGGATGAGAGTGGTGGAGATGGGGACAGGGGTAGGAGGGGCCTTGTTGATAGAGACGCTGACAGTGGTTGGTTGAAGGGGCAGGCCGAGCTGCTTGATCTTGACAGCCTTGCACAAGAGCAAAGTAGATTGTTGGTTTCGAAAAAGTGCGTGCTTCCAGATGGGTCTTACAGACATCCCAGCAAGGGATATGAAGAAATCCATGTGCCGGCCTTGAAACCGAGACCATTTAGTCCTGACGAGAAGCTTGTTAAAATATCTGCCATGCCAGAGTGGGCTCAGCCAGCTTTCAAAGGAATGACCCAGTTGAACAGGGTACAGAGTAGAGTCTATGAGACTGCGCTTTTCAAGGCGGACAATATCCTGTTATGTGCTCCTACTGGTGCTGGAAAAACTAATGTTGCAGTGCTCACTATACTTCAGCAGTTTGCGCTGAACATGGACAAGGAGGATGGTTCCATAAACCACAGTGATTATAAGATTGTATATGTTGCACCTATGAAAGCTCTTGTTGCTGAAGTTGTTGGAAATCTTTCTAATCGGTTGAAGGATTATGGTGTCACTGTGAGGGAGCTAAGTGGTGACCAGACATTGACTCGCCAACACGTTGGATCGATCGAAGAAACTCAAATTATTGTCACAACCCCTGAGAAGTGGGATATCATTACCCGAAAGTCGGGAGACCGTACTTACACTCAACTGGTCAAACTTCTTATCATTGATGAGATTCATCTTCTCCATGATAATAGAGGCCCTGTTCTTGAAAGTATTGTCGCTAGAACTGTTAGGCAGATTGAGACCACGAAAGATCATATTCGGTTGGTGGGGTTATCTGCTACACTCCCTAACTACGAAGATGTGGCATTGTTCTTGCGTGTTGATCTTAAGAAGGGACTATTTTATTTTGATAACAGTTACAGACCTGTCCCCCTTTCTCAACAGTATATTGGAATCATGGTAAGGAAACCATTGCAGAGATTCCAGTTGATGAATGATCTCTGCTACGAGAAGGTTGTGGCTGTAGCTGGAAAACATCAAGTCCTTATCTTTGTCCATTCGAGGAAAGAAACAGCCAAAACAGCTCGTGCAATAAGAGATACTGCACTTGCTAAGGACACCCTTGGTAGGTTTCTGAAAGAAGACAGTGCGAGCCGCGAGATTCTAACTACTCATACAGATTTGGTCAAGAGCAATGATCTCTAG

Protein Analysis

441

Amino Acids

49.47

Weight (kDa)

8.95

Isoelectric Point (pI)

31.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ResIII PF04851 144 - 322 1.4e-13 Type III restriction enzyme, res subunit
DEAD PF00270 145 - 326 3e-33 DEAD/DEAH box helicase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 597
AasI GACNNNNNNGTC 1 cut(s) 351
Acc36I ACCTGC 1 cut(s) 105
AccII CGCG 1 cut(s) 1275
AccIII TCCGGA 1 cut(s) 16
AciI CCGC 2 cut(s) 473, 1273
AclWI GGATC 1 cut(s) 739
AcuI CTGAAG 2 cut(s) 524, 657
AfaI GTAC 2 cut(s) 438, 808
AfiI CCNNNNNNNGG 4 cut(s) 305, 328, 796, 1245
AflII CTTAAG 1 cut(s) 1004
AflIII ACRYGT 1 cut(s) 724
AgsI TTSAA 8 cut(s) 121, 196, 337, 412, 430, 469, 667, 884
AluBI AGCT 8 cut(s) 10, 211, 367, 407, 626, 694, 1145, 1202
AluI AGCT 8 cut(s) 10, 211, 367, 407, 626, 694, 1145, 1202
Alw21I GWGCWC 2 cut(s) 496, 531
Alw26I GTCTC 5 cut(s) 168, 337, 449, 795, 911
AlwI GGATC 1 cut(s) 739
Aor13HI TCCGGA 1 cut(s) 16
AoxI GGCC 4 cut(s) 160, 204, 330, 871
ApeKI GCWGC 3 cut(s) 7, 26, 211
Asp700I GAANNNNTTC 1 cut(s) 652
AspLEI GCGC 2 cut(s) 463, 553
AspS9I GGNCC 3 cut(s) 14, 160, 872
AsuHPI GGTGA 1 cut(s) 713
AsuII TTCGAA 1 cut(s) 260
AvaII GGWCC 1 cut(s) 14
BanII GRGCYC 1 cut(s) 400
BauI CACGAG 1 cut(s) 1203
BbsI GAAGAC 1 cut(s) 1266
Bbv12I GWGCWC 2 cut(s) 496, 531
BbvI GCAGC 3 cut(s) 13, 19, 198
BccI CCATC 3 cut(s) 134, 275, 566
BcoDI GTCTC 5 cut(s) 168, 337, 449, 795, 911
BfaI CTAG 3 cut(s) 60, 897, 1321
BfmI CTRYAG 1 cut(s) 1140
BfrI CTTAAG 1 cut(s) 1004
BfuAI ACCTGC 1 cut(s) 105
BglI GCCNNNNNGGC 1 cut(s) 56
BisI GCNGC 4 cut(s) 8, 27, 212, 1273
BlpI GCTNAGC 1 cut(s) 399
BlsI GCNGC 4 cut(s) 9, 28, 213, 1274
Bme18I GGWCC 1 cut(s) 14
BmgT120I GGNCC 3 cut(s) 14, 160, 872
BmiI GGNNCC 3 cut(s) 15, 161, 577
BmrI ACTGGG 1 cut(s) 418
BmuI ACTGGG 1 cut(s) 418
BpiI GAAGAC 1 cut(s) 1266
Bpu10I CCTNAGC 1 cut(s) 1230
Bpu1102I GCTNAGC 1 cut(s) 399
Bpu14I TTCGAA 1 cut(s) 260
Bsa29I ATCGAT 1 cut(s) 734
BsaI GGTCTC 3 cut(s) 337, 795, 911
BsaJI CCNNGG 1 cut(s) 1240
BsaWI WCCGGW 1 cut(s) 16
Bsc4I CCNNNNNNNGG 4 cut(s) 305, 328, 796, 1245
Bse118I RCCGGY 1 cut(s) 328
Bse1I ACTGG 4 cut(s) 424, 505, 825, 1102
Bse3DI GCAATG 2 cut(s) 1088, 1318
BseAI TCCGGA 1 cut(s) 16
BseCI ATCGAT 1 cut(s) 734
BseDI CCNNGG 1 cut(s) 1240
BseGI GGATG 3 cut(s) 130, 295, 577
BseLI CCNNNNNNNGG 4 cut(s) 305, 328, 796, 1245
BseMI GCAATG 2 cut(s) 1088, 1318
BseMII CTCAG 2 cut(s) 413, 759
BseNI ACTGG 4 cut(s) 424, 505, 825, 1102
BseXI GCAGC 3 cut(s) 13, 19, 198
BseYI CCCAGC 2 cut(s) 10, 299
BsgI GTGCAG 1 cut(s) 1206
Bsh1236I CGCG 1 cut(s) 1275
Bsh1285I CGRYCG 1 cut(s) 738
BshFI GGCC 4 cut(s) 162, 206, 332, 873
BshVI ATCGAT 1 cut(s) 734
BsiEI CGRYCG 1 cut(s) 738
BsiHKAI GWGCWC 2 cut(s) 496, 531
BsiSI CCGG 2 cut(s) 17, 329
BslFI GGGAC 3 cut(s) 158, 1026, 1031
BslI CCNNNNNNNGG 4 cut(s) 305, 328, 796, 1245
BsmAI GTCTC 5 cut(s) 168, 337, 449, 795, 911
BsmBI CGTCTC 1 cut(s) 168
BsmFI GGGAC 3 cut(s) 158, 1026, 1031
BsnI GGCC 4 cut(s) 162, 206, 332, 873
Bso31I GGTCTC 3 cut(s) 337, 795, 911
Bsp119I TTCGAA 1 cut(s) 260
Bsp1286I GDGCHC 3 cut(s) 400, 496, 531
Bsp13I TCCGGA 1 cut(s) 16
Bsp143I GATC 7 cut(s) 217, 731, 735, 928, 1000, 1114, 1315
Bsp1720I GCTNAGC 1 cut(s) 399
BspACI CCGC 2 cut(s) 473, 1273
BspANI GGCC 4 cut(s) 162, 206, 332, 873
BspCNI CTCAG 2 cut(s) 412, 760
BspDI ATCGAT 1 cut(s) 734
BspEI TCCGGA 1 cut(s) 16
BspFNI CGCG 1 cut(s) 1275
BspLI GGNNCC 3 cut(s) 15, 161, 577
BspMI ACCTGC 1 cut(s) 105
BspPI GGATC 1 cut(s) 739
BspT104I TTCGAA 1 cut(s) 260
BspTI CTTAAG 1 cut(s) 1004
BspTNI GGTCTC 3 cut(s) 337, 795, 911
BsrDI GCAATG 2 cut(s) 1088, 1318
BsrFI RCCGGY 1 cut(s) 328
BsrI ACTGG 4 cut(s) 424, 505, 825, 1102
BssAI RCCGGY 1 cut(s) 328
BssECI CCNNGG 1 cut(s) 1240
BssMI GATC 7 cut(s) 217, 731, 735, 928, 1000, 1114, 1315
BssSI CACGAG 1 cut(s) 1203
BssT1I CCWWGG 1 cut(s) 1240
Bst2BI CACGAG 1 cut(s) 1203
Bst4CI ACNGT 9 cut(s) 42, 185, 590, 685, 806, 904, 1034, 1062, 1265
Bst6I CTCTTC 2 cut(s) 86, 99
BstAFI CTTAAG 1 cut(s) 1004
BstBI TTCGAA 1 cut(s) 260
BstC8I GCNNGC 7 cut(s) 48, 112, 204, 272, 330, 405, 1270
BstDEI CTNAG 4 cut(s) 399, 695, 768, 1230
BstEII GGTNACC 1 cut(s) 701
BstF5I GGATG 3 cut(s) 130, 295, 577
BstFNI CGCG 1 cut(s) 1275
BstHHI GCGC 2 cut(s) 463, 553
BstKTI GATC 7 cut(s) 220, 734, 738, 931, 1003, 1117, 1318
BstMAI GTCTC 5 cut(s) 168, 337, 449, 795, 911
BstMBI GATC 7 cut(s) 217, 731, 735, 928, 1000, 1114, 1315
BstMCI CGRYCG 1 cut(s) 738
BstMWI GCNNNNNNNGC 6 cut(s) 56, 208, 404, 550, 632, 1199
BstNSI RCATGY 1 cut(s) 50
BstPI GGTNACC 1 cut(s) 701
BstSFI CTRYAG 1 cut(s) 1140
BstUI CGCG 1 cut(s) 1275
BstV1I GCAGC 3 cut(s) 13, 19, 198
BstV2I GAAGAC 1 cut(s) 1266
BstXI CCANNNNNNTGG 1 cut(s) 728
Bsu15I ATCGAT 1 cut(s) 734
BsuRI GGCC 4 cut(s) 162, 206, 332, 873
BsuTUI ATCGAT 1 cut(s) 734
BtsCI GGATG 3 cut(s) 130, 295, 577
BtsI GCAGTG 1 cut(s) 531
BtsIMutI CAGTG 5 cut(s) 190, 531, 595, 681, 1270
BveI ACCTGC 1 cut(s) 105
Cac8I GCNNGC 7 cut(s) 48, 112, 204, 272, 330, 405, 1270
CfoI GCGC 2 cut(s) 463, 553
Cfr10I RCCGGY 1 cut(s) 328
Cfr13I GGNCC 3 cut(s) 14, 160, 872
ClaI ATCGAT 1 cut(s) 734
CseI GACGC 1 cut(s) 185
Csp6I GTAC 2 cut(s) 437, 807
CviAII CATG 6 cut(s) 47, 323, 385, 559, 860, 1075
CviQI GTAC 2 cut(s) 437, 807
DdeI CTNAG 4 cut(s) 399, 695, 768, 1230
DpnI GATC 7 cut(s) 219, 733, 737, 930, 1002, 1116, 1317
DpnII GATC 7 cut(s) 217, 731, 735, 928, 1000, 1114, 1315
DrdI GACNNNNNNGTC 1 cut(s) 351
DseDI GACNNNNNNGTC 1 cut(s) 351
Eam1104I CTCTTC 2 cut(s) 86, 99
EarI CTCTTC 2 cut(s) 86, 99
EciI GGCGGA 1 cut(s) 488
Eco130I CCWWGG 1 cut(s) 1240
Eco24I GRGCYC 1 cut(s) 400
Eco31I GGTCTC 3 cut(s) 337, 795, 911
Eco32I GATATC 1 cut(s) 781
Eco47I GGWCC 1 cut(s) 14
Eco57I CTGAAG 2 cut(s) 524, 657
Eco91I GGTNACC 1 cut(s) 701
EcoO109I RGGNCCY 2 cut(s) 160, 872
EcoO65I GGTNACC 1 cut(s) 701
EcoRV GATATC 1 cut(s) 781
EcoT14I CCWWGG 1 cut(s) 1240
EcoT38I GRGCYC 1 cut(s) 400
ErhI CCWWGG 1 cut(s) 1240
Esp3I CGTCTC 1 cut(s) 168
FaeI CATG 6 cut(s) 50, 326, 388, 562, 863, 1078
FaqI GGGAC 3 cut(s) 158, 1026, 1031
FatI CATG 6 cut(s) 46, 322, 384, 558, 859, 1074
Fnu4HI GCNGC 4 cut(s) 8, 27, 212, 1273
FokI GGATG 3 cut(s) 137, 282, 584
FriOI GRGCYC 1 cut(s) 400
Fsp4HI GCNGC 4 cut(s) 8, 27, 212, 1273
FspBI CTAG 3 cut(s) 60, 897, 1321
GlaI GCGC 2 cut(s) 462, 552
GluI GCNGC 4 cut(s) 8, 27, 212, 1273
GsaI CCCAGC 2 cut(s) 14, 303
HaeIII GGCC 4 cut(s) 162, 206, 332, 873
HapII CCGG 2 cut(s) 17, 329
HgaI GACGC 1 cut(s) 185
HhaI GCGC 2 cut(s) 463, 553
Hin1II CATG 6 cut(s) 50, 326, 388, 562, 863, 1078
Hin6I GCGC 2 cut(s) 461, 551
HinP1I GCGC 2 cut(s) 461, 551
HindIII AAGCTT 1 cut(s) 365
HinfI GANTC 6 cut(s) 447, 715, 847, 1071, 1098, 1279
HpaII CCGG 2 cut(s) 17, 329
HphI GGTGA 1 cut(s) 713
Hpy188I TCNGA 1 cut(s) 1254
Hpy188III TCNNGA 7 cut(s) 17, 221, 278, 356, 798, 881, 1306
HpyAV CCTTC 5 cut(s) 115, 190, 661, 1003, 1123
HpyCH4III ACNGT 9 cut(s) 42, 185, 590, 685, 806, 904, 1034, 1062, 1265
HpyCH4IV ACGT 1 cut(s) 726
HpyF10VI GCNNNNNNNGC 6 cut(s) 56, 208, 404, 550, 632, 1199
HpyF3I CTNAG 4 cut(s) 399, 695, 768, 1230
HpySE526I ACGT 1 cut(s) 726
Hsp92II CATG 6 cut(s) 50, 326, 388, 562, 863, 1078
HspAI GCGC 2 cut(s) 461, 551
Kpn2I TCCGGA 1 cut(s) 16
KroI GCCGGC 1 cut(s) 328
KroNI GCCGGC 1 cut(s) 330
Kzo9I GATC 7 cut(s) 217, 731, 735, 928, 1000, 1114, 1315
LmnI GCTCC 2 cut(s) 499, 691
Lsp1109I GCAGC 3 cut(s) 13, 19, 198
MaeI CTAG 3 cut(s) 60, 897, 1321
MaeII ACGT 1 cut(s) 726
MaeIII GTNAC 4 cut(s) 679, 701, 757, 1034
MalI GATC 7 cut(s) 219, 733, 737, 930, 1002, 1116, 1317
MboI GATC 7 cut(s) 217, 731, 735, 928, 1000, 1114, 1315
MboII GAAGA 7 cut(s) 103, 116, 326, 752, 845, 986, 1271
MfeI CAATTG 1 cut(s) 30
MhlI GDGCHC 3 cut(s) 400, 496, 531
MluCI AATT 2 cut(s) 30, 750
MlyI GAGTC 2 cut(s) 456, 709
MmeI TCCRAC 2 cut(s) 625, 709
MnlI CCTC 7 cut(s) 66, 100, 150, 562, 681, 863, 1173
MroI TCCGGA 1 cut(s) 16
MroNI GCCGGC 1 cut(s) 328
MroXI GAANNNNTTC 1 cut(s) 652
MseI TTAA 2 cut(s) 372, 1005
MspA1I CMGCKG 1 cut(s) 10
MspCI CTTAAG 1 cut(s) 1004
MspI CCGG 2 cut(s) 17, 329
MunI CAATTG 1 cut(s) 30
MvnI CGCG 1 cut(s) 1275
MwoI GCNNNNNNNGC 6 cut(s) 56, 208, 404, 550, 632, 1199
NaeI GCCGGC 1 cut(s) 330
NdeII GATC 7 cut(s) 217, 731, 735, 928, 1000, 1114, 1315
NgoMIV GCCGGC 1 cut(s) 328
NlaIII CATG 6 cut(s) 50, 326, 388, 562, 863, 1078
NlaIV GGNNCC 3 cut(s) 15, 161, 577
NmeAIII GCCGAG 1 cut(s) 232
NmuCI GTSAC 3 cut(s) 679, 701, 757
NspI RCATGY 1 cut(s) 50
NspV TTCGAA 1 cut(s) 260
PaeI GCATGC 1 cut(s) 50
PdiI GCCGGC 1 cut(s) 330
PdmI GAANNNNTTC 1 cut(s) 652
PfeI GAWTC 4 cut(s) 847, 1071, 1098, 1279
PkrI GCNGC 4 cut(s) 9, 28, 213, 1274
Ple19I CGATCG 1 cut(s) 738
PleI GAGTC 2 cut(s) 455, 709
PpsI GAGTC 2 cut(s) 455, 709
PsiI TTATAA 1 cut(s) 597
PspEI GGTNACC 1 cut(s) 701
PspFI CCCAGC 2 cut(s) 10, 299
PspN4I GGNNCC 3 cut(s) 15, 161, 577
PspPI GGNCC 3 cut(s) 14, 160, 872
PvuI CGATCG 1 cut(s) 738
PvuII CAGCTG 1 cut(s) 10
RsaI GTAC 2 cut(s) 438, 808
RsaNI GTAC 2 cut(s) 437, 807
SaqAI TTAA 2 cut(s) 372, 1005
SatI GCNGC 4 cut(s) 8, 27, 212, 1273
Sau3AI GATC 7 cut(s) 217, 731, 735, 928, 1000, 1114, 1315
Sau96I GGNCC 3 cut(s) 14, 160, 872
SchI GAGTC 2 cut(s) 456, 709
SduI GDGCHC 3 cut(s) 400, 496, 531
SfcI CTRYAG 1 cut(s) 1140
SfuI TTCGAA 1 cut(s) 260
SinI GGWCC 1 cut(s) 14
SmlI CTYRAG 1 cut(s) 1004
SmoI CTYRAG 1 cut(s) 1004
SphI GCATGC 1 cut(s) 50
Sse9I AATT 2 cut(s) 30, 750
SsiI CCGC 2 cut(s) 473, 1273
SspMI CTAG 3 cut(s) 60, 897, 1321
StyI CCWWGG 1 cut(s) 1240
TaaI ACNGT 9 cut(s) 42, 185, 590, 685, 806, 904, 1034, 1062, 1265
TaiI ACGT 1 cut(s) 729
TaqI TCGA 4 cut(s) 260, 734, 738, 1178
TasI AATT 2 cut(s) 30, 750
TauI GCSGC 1 cut(s) 1275
TfiI GAWTC 4 cut(s) 847, 1071, 1098, 1279
Tru1I TTAA 2 cut(s) 372, 1005
Tru9I TTAA 2 cut(s) 372, 1005
TscAI CASTG 5 cut(s) 190, 531, 595, 688, 1270
TseFI GTSAC 3 cut(s) 679, 701, 757
TseI GCWGC 3 cut(s) 7, 26, 211
Tsp45I GTSAC 3 cut(s) 679, 701, 757
TspDTI ATGAA 4 cut(s) 327, 635, 839, 1124
TspRI CASTG 5 cut(s) 190, 531, 595, 688, 1270
Vha464I CTTAAG 1 cut(s) 1004
VpaK11BI GGWCC 1 cut(s) 14
XceI RCATGY 1 cut(s) 50
XmnI GAANNNNTTC 1 cut(s) 652
XspI CTAG 3 cut(s) 60, 897, 1321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.