Rmu_ssc0000323.1_g000031

U5 small nuclear ribonucleoprotein 200 kDa

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000323.1
Physical Location & Seq
Reverse (-)
132246 .. 139589
7344 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000323.1_g000031.1.cds

Sequence Viewer

Length: 6441 bp
ctgaccacagactctcggccacgtgacacgcacgagccaaccggcgagccggaatcgctctggggaaagattgaccccaagagctttggtgacagggcgtacaggggaaggccgccggagttggatgataagcttaagaagtcgaagaagaagaaggagcgtgatcccaatgccgagcctgcccctgttcggcagagcaaaaggcgccggctgcatgaggagagtgtgctcacggccacggaggaaggggtttaccagcctaagacgaaagagacccgggcggcgtatgaggctatgcttagtgtgattcagcagcagttgggtgggcagcccttgaatatagtgagtggtgcggctgatgagattttggctgtgcttaagaatgagacgtttaagaatcctgaaaagaaaaaagagattgagaagttgttgaaccctatacctacaacggtgtttgatactttggttcagattgggaggttgatcactgactaccaagatgggagtgacgctggtgggtctgcagtggctaatggtgacgaagctctggatgatgatgttggtgttgcagttgagtttgaagagaatgaggaggatgaggaggagagcgatcttgacatggtccaggaggacgaggaagaggaggatgatgatgatgatgtggctgaacgacatgagtctggggctatgcaaatgggaggtggcattgatgatgatgaaatgcaggaagccaatgagggtctgagtcttaatgttcaggatattgatgcttactggcttcagagaaagatatctgaagcttatgagaaacagattgatccacaacaatgccagaagcttgctgaagaggtgctaaagatccttcctgaaggtgatgacagggatgttgaatcaaagctactgttgcaccttcagtttgacaagttcagtcttatcaagtttctgttgcgaaaccggctgaagattttctggtgcacccgtttggcaagagctgaagaccaagatgagaggaagaacatcgaggaggaaatgttgcgtctgggtcgtaaagatttggattcaattgtggaccagttacatgccacaagggctagtgcaaaggagaggcaaaagaacttggagaagagtattagagaggaggctcgcaggttgaaggatgaaagtggtggagacggggacagggctaggagggggcttgtggatagagatgctgatagtggttggttgaagagccaggctcagctgcttgatcttgacagccttgcacaagagcaaagtcgactattggtgtcaaagaagtgtgttcttccagatgggtcttatagacatcccagcaagggttatgaagaaatccatgtgccagcgttgaagcctaaaccatttgatgctgatgagaaacttgtaaaaatatctgctatgccagagtgggctcgaccagctttcaaaggaatggctcagttgaacagggtacagagtaaagtctacaatactgctctttttgaagcggaaaatatcctcctatgcgctcctactggggcagggaaaactaatgttgcagtgctaactatccttcagcagtttgcactgcacatgaatccggaggatggttcgataaaccacaatgcgtataagattgtgtacgtcgctcctatgaaagctcttgttgctgaagtggttggcaatttgtctaatcgtttgcaggattatggtgtcacagtgagggaactaagtggtgaccagtcaatgactcgccaacaaattgaagagactcagattattgtcacaactcctgagaagtgggatatcatcaccagaaagtcaggagatcgtacgtatacccaacttgtcacacttctcataattgatgagattcatcttcttcatgataatagaggccctgttcttgaaagcattgttgctagaactgttaggcagatagagaccacgaaacaacacattcggttggtgggtttatctgctacactacctaactatcaagatgtggcactcttcttgcgtgttgataagggtctgtttcattttgacaatagttacagacctgtccctctttctcaacagtatattggcatcatggtaaggaagccattgcagaggttccaattgatgaatgatatctgctacgaaaaggtgatggctggggctggaaaacatcaagttctgatttttgtccactcaaggaaggaaacagccaaaacagctcgtgctatacgagatacagctcttgctaatgatacccttggtagatttctgaaagaagacagtgcaagcagggaaattcttcatactcatactgaattggtcaagagcaatgatcttaaagacctactaccatatggttttgctattcatcacgctgggttgaacagggctgatcgccaattggttgaggatctctttagtgatgggcatgtacaggttttggtttccactgcaacactggcttggggtgtgaatcttccagctcacactgtgataatcaagggaactcaggtttatgatccagaaaagggtgcatggactgaactaagtccacttgatgttatgcagatgttgggtcgtgcaggaagacctcagtttgattcatatggagaagggataatcattactggacacaatgaactacaatactacctttccttgatgaaccaacaacttcctattgaaagtcagtttgtgtccaaattggcagatcaattgaatgctgaaattgttcttggtacggtccaaaatgccagagaagcttgtacttggttaggatacacttatttgtttgttcgcatgttacgtaatccaacactgtatcgtttggaagctgatgttctttcaagagatattacattggaggagaggcgagctgatctgatccattctgctgcaaccatcttggacaagaacaatttgattaagtacgacaggaaaagcggatatttccaagtaacggacttgggtcgaattgctagctattactacataagtcatggaacaatatctacatataatgagcatttgaagccaacaatgggggacattgagctttgtagattgttctcgctcagtgaagaatttaagtatgtcactgttcggcaggatgaaaagatggaactggcaaagttattagaccgtgttccgattccagtgaaggaaagccttgaagagcccagtgcaaagattaatgtgctgttgcaagcatatatttcacagctgaagcttgaagggctctcattgacatctgacatggtttacattactcagagtgctgggcgtcttctaagagctcttttcgagattgtcttgaaacggggatgggctctacttgcagaaaaggctttgaacttgtgtaaaatggttaacaagaggatgtggagtgtccagactccacttcgccaattccatggaataacaaatgatatcttaattaagttggagaagaaggatttggcctgggatagatattatgacctctcctcacaggaacttggggagcttatacgaatgccaaagatgggaagaacactccacaagttcatccaccagttccccaaattaaaccttgcagcacatgtgcagccaatcactcgcactgtattaagggttgaacttactataacaccagacttccaatgggaggacaaagttcatggatatgtggagccattttgggtaatagtggaggataatgatggagagtatattcttcatcatgagtattttctcctgaagaagcagtatattgatgaggatcatactttgaactttacagtgcaaatttatgaacctcttccacctcaatacttcattcgtgtcgtgtctgataggtggcttgggtcgcaaactgttttacctgtttcattcagacaccttatcttacctgaaaagtatcctcctccgacggagttgttggacttgcaaccacttcctgtaacagcattgagaaattcgtcgtatgaagctctctatgattttaagcattttaaccccatccagacgcaggtcttcactgttctgtataattccgatgacaacgtcttagttgctgcaccaacagggagtggcaagaccatatgtgcagagtttgctgtattgaggaatcatcaaaaggcctctgagactggcatgcgtgttgtgtatattgcacctattgaaggtcttgccaaggaacggtacgctgactggcagaagaagtttggaactggtccaaagggtctaaatctacgtgttgttgaattaacaggggaaacagccacagacttaaaactgcttgagaaaggtcagattatcatcagcactccagacaagtgggatgctttatctcggcggtggaaacagaggaaacatgttcagcaggttagcctttttattatagatgaagtccacttgattggtggtcagggcggtcccattttggaggtgatagtctctaggatgagacacatagcaagtcaaggtgagaacagaattcgtattgtggctctgtccacttctcttgcaaatgccaaggatcttggagaatggataggtgctacctctcatggccttttcaattttccgcctggtgtgcgcccagtgccacttgaaatacacattcagggggtggatttagcaaattttgaagcaaggatgcaagcgatggcaaaaccaacatacactgcaattgttcaacatgccaagaatgggaaaccagctcttgtgtatgttcctacaaggaaacatgcccgcctgacagctttggatctgatgacttactcagatgcagatggtgctgagagtccgccatttttattgcggtctgcagaagagatggagcctttcgttgagaaaatcagtgatgagatcttggcacgcacactgcgccatggagtgggctacttgcatgagggcttaacgagcgatgatcaagacattgtgtcaactctttttgaagctgagtacattcaagtgtgtgtcatgagtggttcaatgtgttggggagtgccattgtctgctcatttagtggttgtgatgggaactcaatattatgatggccgggaaaacatccattctgattaccctgttactgatctattgcagatgatggggcatgccagtcgccctaagcttgataattctgggaaatgtgtcatcttctgccatgctcctcgtaaagaatactacatgaagttcttatacgaagcattccctgttgaaagccatttgcaccattacctacatgataatctaaatgcagaagttgttgctcgaattattgagaacaagcaagatgctgttgattaccttacctggaccttcttgtacaggaggctcacacagaatcccaattattataatcttcagggagttactcagaggcatctttctgattacctctcagagcttgtagaaaatacactgagcgacttggaggcaagcaagtgtgtttctatagaggatgacattgatctttcgcctttgaatcttggcatgatagcttcatattattacatcagttatactaccatcgagcgtttcagttcttccttaacttccaaaacaaagatgaagggccttcttgagattctaactcatgcttctgagtattcgcaacttcctatacgacctggggaggaagaggttattcgaaggttgatcaaccaccagagattttcttttgagaatccgaaatgcacagatcctcacatcaaagcaaatgctctgcttcaggcccattttgcgaggcatcatgtggctggtaacctagcattggaccagcgggaggtcctcctttctgcaagtaggttgcttcaggcaatggttgatgtcatttccagcaatggctggctaaaccttgctctcctagcaatggaagtcagccaaatggttactcagggaatgtgggatcgtgactcgatgcttttacagcttcctcacttcacaaaggagctggcaaagagatgccaagatgaaaagagtatagagagggtatctgatttggtggacatggagagtgatgagaggcacgaaatacttcaggagctacttcagatgtcagagacagagacagagatcgaagatattgaacaatactgcaaaaggtttcccaacattgaaatgacatttaaggtgctggatagtgagaatgtgatggccggggaagaaatcactttgcaagttgatatggagcgtgaacgggttggccctgttgatgctccaaggtatcccaagaccaaggaagagggatggtggctggtagttggggataccaagactaactcattgcttgccatcaagagagttcctccgcaaaagaaggccaaggtcaagcttggatttgcggctcctgcagaagctggaaagaagacgtatactctctatttcatgtgtgattcttacttgggatgtgatgaggaacatagcttcactgtagatgtacaagaagcagagtag

Protein Analysis

2146

Amino Acids

244.16

Weight (kDa)

5.53

Isoelectric Point (pI)

41.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 5343
Acc36I ACCTGC 3 cut(s) 1137, 4000, 4354
AccB1I GGYRCC 1 cut(s) 204
AccB7I CCANNNNNTGG 1 cut(s) 4879
AccI GTMKAC 4 cut(s) 1279, 1482, 1835, 6359
AccIII TCCGGA 1 cut(s) 1597
AcoI YGGCCR 4 cut(s) 17, 234, 5041, 6141
AcsI RAATTY 6 cut(s) 2295, 3083, 3786, 3955, 4476, 4624
AcvI CACGTG 1 cut(s) 23
AcyI GRCGYC 2 cut(s) 205, 3283
AdeI CACNNNGTG 1 cut(s) 2491
AflII CTTAAG 2 cut(s) 134, 377
AflIII ACRYGT 3 cut(s) 3580, 4234, 4354
AhdI GACNNNNNGTC 1 cut(s) 4924
AjnI CCWGG 6 cut(s) 624, 1233, 3461, 4570, 5297, 5614
AjuI GAANNNNNNNTTGG 4 cut(s) 2718, 2750, 3440, 3472
Alw21I GWGCWC 3 cut(s) 231, 977, 3298
Alw44I GTGCAC 1 cut(s) 973
AlwNI CAGNNNCTG 1 cut(s) 6344
Ama87I CYCGRG 1 cut(s) 276
Aor13HI TCCGGA 1 cut(s) 1597
ApaLI GTGCAC 1 cut(s) 973
ApeKI GCWGC 8 cut(s) 211, 313, 328, 1243, 2894, 3575, 3586, 4055
ApoI RAATTY 6 cut(s) 2295, 3083, 3786, 3955, 4476, 4624
AseI ATTAAT 1 cut(s) 3192
Asp700I GAANNNNTTC 5 cut(s) 965, 2298, 2730, 3798, 6021
AspLEI GCGC 4 cut(s) 207, 1526, 4581, 4872
AsuC2I CCSGG 4 cut(s) 277, 278, 5045, 6145
AsuHPI GGTGA 8 cut(s) 101, 548, 884, 1745, 1801, 2161, 4441, 4478
AsuII TTCGAA 1 cut(s) 5635
AsuNHI GCTAGC 1 cut(s) 2978
AvaI CYCGRG 1 cut(s) 276
AvaII GGWCC 8 cut(s) 622, 1069, 2743, 4214, 4415, 5301, 5761, 5773
BaeGI GKGCMC 1 cut(s) 977
BaeI ACNNNNGTAYC 2 cut(s) 450, 483
BanI GGYRCC 1 cut(s) 204
BanII GRGCYC 5 cut(s) 1432, 3180, 3240, 3298, 3331
BarI GAAGNNNNNNTAC 2 cut(s) 5168, 5200
BauI CACGAG 2 cut(s) 32, 2220
BbrPI CACGTG 1 cut(s) 23
BbsI GAAGAC 6 cut(s) 1002, 2283, 2593, 3278, 4006, 6359
Bbv12I GWGCWC 3 cut(s) 231, 977, 3298
BbvI GCAGC 8 cut(s) 198, 325, 340, 1230, 2881, 3587, 3598, 4042
BceAI ACGGC 1 cut(s) 249
BcgI CGANNNNNNTGC 2 cut(s) 5087, 5121
BciT130I CCWGG 6 cut(s) 626, 1235, 3463, 4572, 5299, 5616
BciVI GTATCC 4 cut(s) 2771, 3909, 6222, 6247
BclI TGATCA 3 cut(s) 483, 4912, 5643
BcnI CCSGG 4 cut(s) 277, 278, 5045, 6145
BfaI CTAG 7 cut(s) 1092, 1185, 1920, 2979, 4440, 5753, 5852
BfmI CTRYAG 5 cut(s) 522, 4809, 5439, 6336, 6417
BfoI RGCGCY 1 cut(s) 208
BfrI CTTAAG 2 cut(s) 134, 377
BfuAI ACCTGC 3 cut(s) 1137, 4000, 4354
BfuI GTATCC 4 cut(s) 2771, 3909, 6222, 6247
BglI GCCNNNNNGGC 1 cut(s) 1088
BglII AGATCT 1 cut(s) 4851
BlpI GCTNAGC 1 cut(s) 1239
Bme18I GGWCC 8 cut(s) 622, 1069, 2743, 4214, 4415, 5301, 5761, 5773
BmeRI GACNNNNNGTC 1 cut(s) 4924
BmeT110I CYCGRG 1 cut(s) 276
BmiI GGNNCC 6 cut(s) 206, 2117, 3672, 4417, 4824, 6333
BmrI ACTGGG 3 cut(s) 1542, 3174, 4577
BmtI GCTAGC 1 cut(s) 2982
BmuI ACTGGG 3 cut(s) 1542, 3174, 4577
BoxI GACNNNNGTC 3 cut(s) 676, 2967, 4010
BpiI GAAGAC 6 cut(s) 1002, 2283, 2593, 3278, 4006, 6359
BplI GAGNNNNNCTC 4 cut(s) 1222, 1254, 6277, 6309
BpmI CTGGAG 1 cut(s) 4293
Bpu10I CCTNAGC 1 cut(s) 5112
Bpu1102I GCTNAGC 1 cut(s) 1239
Bpu14I TTCGAA 1 cut(s) 5635
BpuEI CTTGAG 3 cut(s) 2179, 4301, 5588
BpuMI CCSGG 4 cut(s) 277, 278, 5045, 6145
BsaAI YACGTR 4 cut(s) 23, 1833, 2807, 4235
BsaBI GATNNNNATC 2 cut(s) 3759, 4298
BsaHI GRCGYC 2 cut(s) 205, 3283
BsaI GGTCTC 2 cut(s) 266, 1934
BsaWI WCCGGW 1 cut(s) 1597
BsaXI ACNNNNNCTCC 2 cut(s) 1016, 1046
Bse118I RCCGGY 3 cut(s) 41, 207, 954
Bse3DI GCAATG 6 cut(s) 2105, 2335, 5811, 5833, 5862, 6269
Bse8I GATNNNNATC 2 cut(s) 3759, 4298
BseAI TCCGGA 1 cut(s) 1597
BseBI CCWGG 6 cut(s) 626, 1235, 3463, 4572, 5299, 5616
BseJI GATNNNNATC 2 cut(s) 3759, 4298
BseMI GCAATG 6 cut(s) 2105, 2335, 5811, 5833, 5862, 6269
BseSI GKGCMC 1 cut(s) 977
BseXI GCAGC 8 cut(s) 198, 325, 340, 1230, 2881, 3587, 3598, 4042
BseYI CCCAGC 4 cut(s) 1331, 2156, 2375, 3278
BsgI GTGCAG 5 cut(s) 1571, 2601, 3605, 4041, 4107
BshNI GGYRCC 1 cut(s) 204
BsiHKAI GWGCWC 3 cut(s) 231, 977, 3298
BsiHKCI CYCGRG 1 cut(s) 276
BsiSI CCGG 9 cut(s) 42, 50, 116, 208, 277, 955, 1598, 5044, 6144
BsiWI CGTACG 1 cut(s) 1829
BslFI GGGAC 4 cut(s) 1190, 2048, 3059, 4401
BsmBI CGTCTC 2 cut(s) 380, 1164
BsmFI GGGAC 4 cut(s) 1190, 2048, 3059, 4401
BsmI GAATGC 3 cut(s) 2725, 3519, 5192
Bso31I GGTCTC 2 cut(s) 266, 1934
BsoBI CYCGRG 1 cut(s) 276
Bsp119I TTCGAA 1 cut(s) 5635
Bsp1286I GDGCHC 7 cut(s) 231, 977, 1432, 3180, 3240, 3298, 3331
Bsp13I TCCGGA 1 cut(s) 1597
Bsp1407I TGTACA 3 cut(s) 2431, 5310, 6424
Bsp1720I GCTNAGC 1 cut(s) 1239
Bsp19I CCATGG 2 cut(s) 3412, 4873
BspEI TCCGGA 1 cut(s) 1597
BspHI TCATGA 3 cut(s) 1882, 3721, 4965
BspLI GGNNCC 6 cut(s) 206, 2117, 3672, 4417, 4824, 6333
BspMAI CTGCAG 3 cut(s) 526, 4813, 6340
BspMI ACCTGC 3 cut(s) 1137, 4000, 4354
BspOI GCTAGC 1 cut(s) 2982
BspQI GCTCTTC 2 cut(s) 1223, 3168
BspT104I TTCGAA 1 cut(s) 5635
BspT107I GGYRCC 1 cut(s) 204
BspTI CTTAAG 2 cut(s) 134, 377
BspTNI GGTCTC 2 cut(s) 266, 1934
BsrDI GCAATG 6 cut(s) 2105, 2335, 5811, 5833, 5862, 6269
BsrFI RCCGGY 3 cut(s) 41, 207, 954
BsrGI TGTACA 3 cut(s) 2431, 5310, 6424
BssAI RCCGGY 3 cut(s) 41, 207, 954
BssNAI GTATAC 2 cut(s) 1836, 6360
BssNI GRCGYC 2 cut(s) 205, 3283
BssSI CACGAG 2 cut(s) 32, 2220
BssT1I CCWWGG 8 cut(s) 2257, 3412, 4173, 4515, 4873, 6206, 6222, 6309
Bst1107I GTATAC 2 cut(s) 1836, 6360
Bst2BI CACGAG 2 cut(s) 32, 2220
Bst2UI CCWGG 6 cut(s) 626, 1235, 3463, 4572, 5299, 5616
BstACI GRCGYC 2 cut(s) 205, 3283
BstAFI CTTAAG 2 cut(s) 134, 377
BstAPI GCANNNNNTGC 2 cut(s) 4094, 4778
BstAUI TGTACA 3 cut(s) 2431, 5310, 6424
BstBAI YACGTR 4 cut(s) 23, 1833, 2807, 4235
BstBI TTCGAA 1 cut(s) 5635
BstDSI CCRYGG 3 cut(s) 237, 3412, 4873
BstEII GGTNACC 2 cut(s) 1733, 5747
BstENI CCTNNNNNAGG 1 cut(s) 4161
BstH2I RGCGCY 1 cut(s) 208
BstHHI GCGC 4 cut(s) 207, 1526, 4581, 4872
BstNI CCWGG 6 cut(s) 626, 1235, 3463, 4572, 5299, 5616
BstNSI RCATGY 9 cut(s) 1082, 2432, 2803, 3584, 4138, 4358, 4685, 4733, 5102
BstPAI GACNNNNGTC 3 cut(s) 676, 2967, 4010
BstPI GGTNACC 2 cut(s) 1733, 5747
BstSFI CTRYAG 5 cut(s) 522, 4809, 5439, 6336, 6417
BstSLI GKGCMC 1 cut(s) 977
BstSNI TACGTA 2 cut(s) 1833, 2807
BstV1I GCAGC 8 cut(s) 198, 325, 340, 1230, 2881, 3587, 3598, 4042
BstV2I GAAGAC 6 cut(s) 1002, 2283, 2593, 3278, 4006, 6359
BstX2I RGATCY 6 cut(s) 858, 2410, 4519, 4750, 4851, 5686
BstXI CCANNNNNNTGG 3 cut(s) 3413, 4317, 4400
BstYI RGATCY 6 cut(s) 858, 2410, 4519, 4750, 4851, 5686
BstZ17I GTATAC 2 cut(s) 1836, 6360
BsuI GTATCC 4 cut(s) 2771, 3909, 6222, 6247
BtgI CCRYGG 3 cut(s) 237, 3412, 4873
BtgZI GCGATG 2 cut(s) 4661, 4923
BtsI GCAGTG 6 cut(s) 531, 1563, 1583, 2448, 4665, 4865
BveI ACCTGC 3 cut(s) 1137, 4000, 4354
CaiI CAGNNNCTG 1 cut(s) 6344
CciI TCATGA 3 cut(s) 1882, 3721, 4965
CfoI GCGC 4 cut(s) 207, 1526, 4581, 4872
Cfr10I RCCGGY 3 cut(s) 41, 207, 954
Cfr9I CCCGGG 1 cut(s) 276
CseI GACGC 4 cut(s) 518, 1025, 3272, 4015
CspCI CAANNNNNGTGG 2 cut(s) 4486, 4521
DinI GGCGCC 1 cut(s) 206
DraIII CACNNNGTG 1 cut(s) 2491
DriI GACNNNNNGTC 1 cut(s) 4924
EaeI YGGCCR 4 cut(s) 17, 234, 5041, 6141
Eam1105I GACNNNNNGTC 1 cut(s) 4924
EciI GGCGGA 2 cut(s) 4557, 4779
Ecl136II GAGCTC 1 cut(s) 3296
Eco105I TACGTA 2 cut(s) 1833, 2807
Eco130I CCWWGG 8 cut(s) 2257, 3412, 4173, 4515, 4873, 6206, 6222, 6309
Eco147I AGGCCT 1 cut(s) 4121
Eco24I GRGCYC 5 cut(s) 1432, 3180, 3240, 3298, 3331
Eco31I GGTCTC 2 cut(s) 266, 1934
Eco32I GATATC 4 cut(s) 792, 1804, 2134, 3430
Eco47I GGWCC 8 cut(s) 622, 1069, 2743, 4214, 4415, 5301, 5761, 5773
Eco53kI GAGCTC 1 cut(s) 3296
Eco72I CACGTG 1 cut(s) 23
Eco88I CYCGRG 1 cut(s) 276
Eco91I GGTNACC 2 cut(s) 1733, 5747
EcoICRI GAGCTC 1 cut(s) 3296
EcoNI CCTNNNNNAGG 1 cut(s) 4161
EcoO109I RGGNCCY 3 cut(s) 1895, 5560, 5773
EcoO65I GGTNACC 2 cut(s) 1733, 5747
EcoRI GAATTC 1 cut(s) 4476
EcoRII CCWGG 6 cut(s) 624, 1233, 3461, 4570, 5297, 5614
EcoRV GATATC 4 cut(s) 792, 1804, 2134, 3430
EcoT14I CCWWGG 8 cut(s) 2257, 3412, 4173, 4515, 4873, 6206, 6222, 6309
EcoT38I GRGCYC 5 cut(s) 1432, 3180, 3240, 3298, 3331
EgeI GGCGCC 1 cut(s) 206
EheI GGCGCC 1 cut(s) 206
ErhI CCWWGG 8 cut(s) 2257, 3412, 4173, 4515, 4873, 6206, 6222, 6309
Esp3I CGTCTC 2 cut(s) 380, 1164
FaqI GGGAC 4 cut(s) 1190, 2048, 3059, 4401
FauI CCCGC 2 cut(s) 4742, 5760
FauNDI CATATG 3 cut(s) 2353, 2605, 4082
FbaI TGATCA 3 cut(s) 483, 4912, 5643
FblI GTMKAC 4 cut(s) 1279, 1482, 1835, 6359
FriOI GRGCYC 5 cut(s) 1432, 3180, 3240, 3298, 3331
FspBI CTAG 7 cut(s) 1092, 1185, 1920, 2979, 4440, 5753, 5852
GlaI GCGC 4 cut(s) 206, 1525, 4580, 4871
GsaI CCCAGC 4 cut(s) 1335, 2160, 2379, 3282
GsuI CTGGAG 1 cut(s) 4293
HaeII RGCGCY 1 cut(s) 208
HapII CCGG 9 cut(s) 42, 50, 116, 208, 277, 955, 1598, 5044, 6144
HgaI GACGC 4 cut(s) 518, 1025, 3272, 4015
HhaI GCGC 4 cut(s) 207, 1526, 4581, 4872
Hin1I GRCGYC 2 cut(s) 205, 3283
Hin6I GCGC 4 cut(s) 205, 1524, 4579, 4870
HinP1I GCGC 4 cut(s) 205, 1524, 4579, 4870
HincII GTYRAC 3 cut(s) 1280, 3370, 4929
HindII GTYRAC 3 cut(s) 1280, 3370, 4929
HindIII AAGCTT 7 cut(s) 131, 798, 836, 2760, 3227, 5114, 6317
HpaI GTTAAC 1 cut(s) 3370
HpaII CCGG 9 cut(s) 42, 50, 116, 208, 277, 955, 1598, 5044, 6144
HphI GGTGA 8 cut(s) 101, 548, 884, 1745, 1801, 2161, 4441, 4478
Hpy99I CGWCG 3 cut(s) 1646, 3913, 3964
HpyCH4IV ACGT 8 cut(s) 22, 389, 1641, 1832, 2806, 4044, 4234, 6356
HpySE526I ACGT 8 cut(s) 22, 389, 1641, 1832, 2806, 4044, 4234, 6356
Hsp92I GRCGYC 2 cut(s) 205, 3283
HspAI GCGC 4 cut(s) 205, 1524, 4579, 4870
KasI GGCGCC 1 cut(s) 204
Kpn2I TCCGGA 1 cut(s) 1597
KroI GCCGGC 1 cut(s) 207
KroNI GCCGGC 1 cut(s) 209
Ksp22I TGATCA 3 cut(s) 483, 4912, 5643
KspAI GTTAAC 1 cut(s) 3370
LguI GCTCTTC 2 cut(s) 1223, 3168
Lsp1109I GCAGC 8 cut(s) 198, 325, 340, 1230, 2881, 3587, 3598, 4042
MaeI CTAG 7 cut(s) 1092, 1185, 1920, 2979, 4440, 5753, 5852
MaeII ACGT 8 cut(s) 22, 389, 1641, 1832, 2806, 4044, 4234, 6356
MfeI CAATTG 5 cut(s) 1062, 2120, 2399, 2714, 4671
MflI RGATCY 6 cut(s) 858, 2410, 4519, 4750, 4851, 5686
MhlI GDGCHC 7 cut(s) 231, 977, 1432, 3180, 3240, 3298, 3331
Mly113I GGCGCC 1 cut(s) 205
MlyI GAGTC 8 cut(s) 5, 686, 754, 1741, 1762, 3388, 4795, 5894
MmeI TCCRAC 5 cut(s) 102, 2837, 3423, 3900, 3932
MroI TCCGGA 1 cut(s) 1597
MroNI GCCGGC 1 cut(s) 207
MroXI GAANNNNTTC 5 cut(s) 965, 2298, 2730, 3798, 6021
MslI CAYNNNNRTG 4 cut(s) 826, 3663, 4955, 6104
MspA1I CMGCKG 3 cut(s) 1243, 3223, 5767
MspCI CTTAAG 2 cut(s) 134, 377
MspI CCGG 9 cut(s) 42, 50, 116, 208, 277, 955, 1598, 5044, 6144
MunI CAATTG 5 cut(s) 1062, 2120, 2399, 2714, 4671
Mva1269I GAATGC 3 cut(s) 2725, 3519, 5192
MvaI CCWGG 6 cut(s) 626, 1235, 3463, 4572, 5299, 5616
NaeI GCCGGC 1 cut(s) 209
NarI GGCGCC 1 cut(s) 205
NciI CCSGG 4 cut(s) 277, 278, 5045, 6145
NcoI CCATGG 2 cut(s) 3412, 4873
NdeI CATATG 3 cut(s) 2353, 2605, 4082
NgoMIV GCCGGC 1 cut(s) 207
NheI GCTAGC 1 cut(s) 2978
NlaIV GGNNCC 6 cut(s) 206, 2117, 3672, 4417, 4824, 6333
NmeAIII GCCGAG 2 cut(s) 199, 4312
NspI RCATGY 9 cut(s) 1082, 2432, 2803, 3584, 4138, 4358, 4685, 4733, 5102
NspV TTCGAA 1 cut(s) 5635
PacI TTAATTAA 1 cut(s) 3438
PaeI GCATGC 2 cut(s) 4138, 5102
PagI TCATGA 3 cut(s) 1882, 3721, 4965
PceI AGGCCT 1 cut(s) 4121
PciI ACATGT 2 cut(s) 3580, 4354
PciSI GCTCTTC 2 cut(s) 1223, 3168
PcsI WCGNNNNNNNCGW 2 cut(s) 2227, 2803
PctI GAATGC 3 cut(s) 2725, 3519, 5192
PdiI GCCGGC 1 cut(s) 209
PdmI GAANNNNTTC 5 cut(s) 965, 2298, 2730, 3798, 6021
Pfl23II CGTACG 1 cut(s) 1829
PflFI GACNNNGTC 2 cut(s) 620, 4043
PflMI CCANNNNNTGG 1 cut(s) 4879
PfoI TCCNGGA 1 cut(s) 624
PleI GAGTC 8 cut(s) 5, 685, 753, 1741, 1762, 3388, 4794, 5894
PluTI GGCGCC 1 cut(s) 208
PmaCI CACGTG 1 cut(s) 23
PmlI CACGTG 1 cut(s) 23
PpsI GAGTC 8 cut(s) 5, 685, 753, 1741, 1762, 3388, 4794, 5894
Ppu21I YACGTR 4 cut(s) 23, 1833, 2807, 4235
PpuMI RGGWCCY 1 cut(s) 5773
PscI ACATGT 2 cut(s) 3580, 4354
PshAI GACNNNNGTC 3 cut(s) 676, 2967, 4010
PshBI ATTAAT 1 cut(s) 3192
PsiI TTATAA 1 cut(s) 5343
Psp124BI GAGCTC 1 cut(s) 3298
Psp5II RGGWCCY 1 cut(s) 5773
Psp6I CCWGG 6 cut(s) 624, 1233, 3461, 4570, 5297, 5614
PspCI CACGTG 1 cut(s) 23
PspEI GGTNACC 2 cut(s) 1733, 5747
PspFI CCCAGC 4 cut(s) 1331, 2156, 2375, 3278
PspGI CCWGG 6 cut(s) 624, 1233, 3461, 4570, 5297, 5614
PspLI CGTACG 1 cut(s) 1829
PspN4I GGNNCC 6 cut(s) 206, 2117, 3672, 4417, 4824, 6333
PspPPI RGGWCCY 1 cut(s) 5773
PsrI GAACNNNNNNTAC 2 cut(s) 2995, 3027
PstI CTGCAG 3 cut(s) 526, 4813, 6340
PstNI CAGNNNCTG 1 cut(s) 6344
PsuI RGATCY 6 cut(s) 858, 2410, 4519, 4750, 4851, 5686
PsyI GACNNNGTC 2 cut(s) 620, 4043
PvuII CAGCTG 2 cut(s) 1243, 3223
RseI CAYNNNNRTG 4 cut(s) 826, 3663, 4955, 6104
SacI GAGCTC 1 cut(s) 3298
SalI GTCGAC 1 cut(s) 1278
SapI GCTCTTC 2 cut(s) 1223, 3168
SchI GAGTC 8 cut(s) 5, 686, 754, 1741, 1762, 3388, 4795, 5894
SduI GDGCHC 7 cut(s) 231, 977, 1432, 3180, 3240, 3298, 3331
SfcI CTRYAG 5 cut(s) 522, 4809, 5439, 6336, 6417
SfoI GGCGCC 1 cut(s) 206
SfuI TTCGAA 1 cut(s) 5635
SinI GGWCC 8 cut(s) 622, 1069, 2743, 4214, 4415, 5301, 5761, 5773
SmaI CCCGGG 1 cut(s) 278
SmiMI CAYNNNNRTG 4 cut(s) 826, 3663, 4955, 6104
SmlI CTYRAG 5 cut(s) 134, 377, 2194, 4280, 5567
SmoI CTYRAG 5 cut(s) 134, 377, 2194, 4280, 5567
SnaBI TACGTA 2 cut(s) 1833, 2807
SphI GCATGC 2 cut(s) 4138, 5102
SseBI AGGCCT 1 cut(s) 4121
SspDI GGCGCC 1 cut(s) 204
SspI AATATT 1 cut(s) 5033
SspMI CTAG 7 cut(s) 1092, 1185, 1920, 2979, 4440, 5753, 5852
SstI GAGCTC 1 cut(s) 3298
StuI AGGCCT 1 cut(s) 4121
StyI CCWWGG 8 cut(s) 2257, 3412, 4173, 4515, 4873, 6206, 6222, 6309
TaiI ACGT 8 cut(s) 25, 392, 1644, 1835, 2809, 4047, 4237, 6359
TatI WGTACW 5 cut(s) 2431, 2765, 4947, 5310, 6424
TauI GCSGC 4 cut(s) 115, 284, 356, 6332
TseI GCWGC 8 cut(s) 211, 313, 328, 1243, 2894, 3575, 3586, 4055
TspGWI ACGGA 3 cut(s) 254, 2975, 3926
TspMI CCCGGG 1 cut(s) 276
Tth111I GACNNNGTC 2 cut(s) 620, 4043
Van91I CCANNNNNTGG 1 cut(s) 4879
Vha464I CTTAAG 2 cut(s) 134, 377
VneI GTGCAC 1 cut(s) 973
VpaK11BI GGWCC 8 cut(s) 622, 1069, 2743, 4214, 4415, 5301, 5761, 5773
VspI ATTAAT 1 cut(s) 3192
XagI CCTNNNNNAGG 1 cut(s) 4161
XapI RAATTY 6 cut(s) 2295, 3083, 3786, 3955, 4476, 4624
XceI RCATGY 9 cut(s) 1082, 2432, 2803, 3584, 4138, 4358, 4685, 4733, 5102
XcmI CCANNNNNNNNNTGG 3 cut(s) 2455, 3639, 4400
XmaI CCCGGG 1 cut(s) 276
XmiI GTMKAC 4 cut(s) 1279, 1482, 1835, 6359
XmnI GAANNNNTTC 5 cut(s) 965, 2298, 2730, 3798, 6021
XspI CTAG 7 cut(s) 1092, 1185, 1920, 2979, 4440, 5753, 5852
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.