U5 small nuclear ribonucleoprotein 200 kDa
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| BRR2_plug | PF21188 | 54 - 116 | 9.9e-09 | Pre-mRNA-splicing helicase BRR2 plug domain |
| Helicase_PWI | PF18149 | 183 - 223 | 9e-08 | N-terminal helicase PWI domain |
| Sec63 | PF02889 | 255 - 510 | 3.7e-87 | Sec63 Brl domain |
| ResIII | PF04851 | 556 - 710 | 1e-10 | Type III restriction enzyme, res subunit |
| DEAD | PF00270 | 557 - 731 | 4.6e-30 | DEAD/DEAH box helicase |
| WHD_SNRNP200 | PF23445 | 936 - 1017 | 4e-34 | Winged Helix-turn-helix domain |
| Sec63 | PF02889 | 1023 - 1338 | 2.3e-64 | Sec63 Brl domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2946 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1896 |
| AatII | GACGTC | 1 cut(s) | 94 |
| Acc16I | TGCGCA | 2 cut(s) | 1762, 2970 |
| Acc36I | ACCTGC | 1 cut(s) | 1605 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 2614, 3432 |
| AccII | CGCG | 2 cut(s) | 239, 1815 |
| AciI | CCGC | 9 cut(s) | 167, 218, 239, 242, 907, 2010, 2407, 2597, 3773 |
| AclWI | GGATC | 7 cut(s) | 974, 1512, 2202, 2346, 3281, 3501, 3907 |
| AcoI | YGGCCR | 1 cut(s) | 2644 |
| AcsI | RAATTY | 4 cut(s) | 274, 283, 887, 3557 |
| AcuI | CTGAAG | 9 cut(s) | 72, 78, 566, 666, 854, 1049, 1502, 2936, 3171 |
| AcyI | GRCGYC | 2 cut(s) | 91, 1087 |
| AdeI | CACNNNGTG | 1 cut(s) | 1079 |
| AfaI | GTAC | 7 cut(s) | 114, 226, 1095, 1350, 1428, 2984, 3657 |
| AfeI | AGCGCT | 1 cut(s) | 2166 |
| AflII | CTTAAG | 1 cut(s) | 3641 |
| AflIII | ACRYGT | 2 cut(s) | 946, 3784 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2527 |
| AhlI | ACTAGT | 1 cut(s) | 928 |
| AjiI | CACGTC | 2 cut(s) | 2901, 3295 |
| Alw21I | GWGCWC | 1 cut(s) | 1102 |
| Alw26I | GTCTC | 5 cut(s) | 152, 2116, 2116, 2415, 2457 |
| AlwI | GGATC | 7 cut(s) | 974, 1512, 2202, 2346, 3281, 3501, 3907 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 2678, 3944 |
| Aor51HI | AGCGCT | 1 cut(s) | 2166 |
| AoxI | GGCC | 5 cut(s) | 1203, 1794, 2227, 2644, 3790 |
| ApeKI | GCWGC | 6 cut(s) | 698, 1006, 1319, 1330, 1730, 2473 |
| ApoI | RAATTY | 4 cut(s) | 274, 283, 887, 3557 |
| Asp700I | GAANNNNTTC | 7 cut(s) | 651, 948, 1398, 1455, 2655, 3558, 3627 |
| AspLEI | GCGC | 8 cut(s) | 239, 1324, 1763, 1815, 2167, 2256, 2971, 3805 |
| AspS9I | GGNCC | 6 cut(s) | 1594, 1889, 3361, 3775, 3791, 3819 |
| AsuC2I | CCSGG | 3 cut(s) | 475, 984, 2648 |
| AsuHPI | GGTGA | 2 cut(s) | 3241, 4067 |
| AsuII | TTCGAA | 1 cut(s) | 3235 |
| AsuNHI | GCTAGC | 1 cut(s) | 782 |
| AvaII | GGWCC | 5 cut(s) | 1594, 1889, 3361, 3775, 3819 |
| BanII | GRGCYC | 3 cut(s) | 1102, 1135, 2887 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 3229, 3261 |
| BbsI | GAAGAC | 5 cut(s) | 1681, 1757, 3155, 4056, 4065 |
| Bbv12I | GWGCWC | 1 cut(s) | 1102 |
| BbvI | GCAGC | 6 cut(s) | 685, 993, 1331, 1342, 1717, 2485 |
| BceAI | ACGGC | 3 cut(s) | 1402, 1871, 2242 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 3044, 3078 |
| BciVI | GTATCC | 4 cut(s) | 654, 698, 1581, 3847 |
| BclI | TGATCA | 2 cut(s) | 726, 2515 |
| BcnI | CCSGG | 3 cut(s) | 475, 984, 2648 |
| BcoDI | GTCTC | 5 cut(s) | 152, 2116, 2116, 2415, 2457 |
| BcuI | ACTAGT | 1 cut(s) | 928 |
| BfaI | CTAG | 9 cut(s) | 366, 399, 783, 929, 1241, 2115, 3176, 3452, 3842 |
| BfmI | CTRYAG | 3 cut(s) | 2914, 3512, 3936 |
| BfoI | RGCGCY | 1 cut(s) | 2168 |
| BfrI | CTTAAG | 1 cut(s) | 3641 |
| BfuAI | ACCTGC | 1 cut(s) | 1605 |
| BfuI | GTATCC | 4 cut(s) | 654, 698, 1581, 3847 |
| Bme18I | GGWCC | 5 cut(s) | 1594, 1889, 3361, 3775, 3819 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2527 |
| BmgBI | CACGTC | 2 cut(s) | 2901, 3295 |
| BmgT120I | GGNCC | 6 cut(s) | 1594, 1889, 3361, 3775, 3791, 3819 |
| BmiI | GGNNCC | 7 cut(s) | 1416, 1890, 2092, 2390, 2873, 3350, 3933 |
| BmrI | ACTGGG | 2 cut(s) | 2252, 2666 |
| BmtI | GCTAGC | 1 cut(s) | 786 |
| BmuI | ACTGGG | 2 cut(s) | 2252, 2666 |
| BoxI | GACNNNNGTC | 2 cut(s) | 771, 1685 |
| BpiI | GAAGAC | 5 cut(s) | 1681, 1757, 3155, 4056, 4065 |
| BpmI | CTGGAG | 4 cut(s) | 1968, 3237, 3299, 3743 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2334 |
| Bpu14I | TTCGAA | 1 cut(s) | 3235 |
| BpuEI | CTTGAG | 3 cut(s) | 654, 2162, 3188 |
| BpuMI | CCSGG | 3 cut(s) | 475, 984, 2648 |
| Bsa29I | ATCGAT | 1 cut(s) | 865 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1503, 1973 |
| BsaHI | GRCGYC | 2 cut(s) | 91, 1087 |
| BsaI | GGTCTC | 1 cut(s) | 2415 |
| BsaJI | CCNNGG | 4 cut(s) | 1206, 1848, 2190, 3815 |
| BsaWI | WCCGGW | 2 cut(s) | 328, 958 |
| Bse1I | ACTGG | 6 cut(s) | 945, 1297, 2258, 2508, 2672, 3363 |
| Bse3DI | GCAATG | 5 cut(s) | 777, 2455, 2795, 3411, 3462 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1503, 1973 |
| BseCI | ATCGAT | 1 cut(s) | 865 |
| BseDI | CCNNGG | 4 cut(s) | 1206, 1848, 2190, 3815 |
| BseJI | GATNNNNATC | 2 cut(s) | 1503, 1973 |
| BseMI | GCAATG | 5 cut(s) | 777, 2455, 2795, 3411, 3462 |
| BseMII | CTCAG | 7 cut(s) | 892, 1343, 1697, 2348, 2538, 2970, 3797 |
| BseNI | ACTGG | 6 cut(s) | 945, 1297, 2258, 2508, 2672, 3363 |
| BseRI | GAGGAG | 3 cut(s) | 461, 479, 2748 |
| BseXI | GCAGC | 6 cut(s) | 685, 993, 1331, 1342, 1717, 2485 |
| BseYI | CCCAGC | 5 cut(s) | 1082, 2384, 3344, 3695, 3743 |
| BsgI | GTGCAG | 4 cut(s) | 578, 1349, 1716, 3265 |
| Bsh1236I | CGCG | 2 cut(s) | 239, 1815 |
| BshFI | GGCC | 5 cut(s) | 1205, 1796, 2229, 2646, 3792 |
| BshVI | ATCGAT | 1 cut(s) | 865 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1102 |
| BsiSI | CCGG | 6 cut(s) | 82, 329, 474, 959, 984, 2647 |
| BslFI | GGGAC | 3 cut(s) | 820, 1902, 2514 |
| BsmAI | GTCTC | 5 cut(s) | 152, 2116, 2116, 2415, 2457 |
| BsmBI | CGTCTC | 3 cut(s) | 152, 2116, 2457 |
| BsmFI | GGGAC | 3 cut(s) | 820, 1902, 2514 |
| BsmI | GAATGC | 2 cut(s) | 325, 2274 |
| BsnI | GGCC | 5 cut(s) | 1205, 1796, 2229, 2646, 3792 |
| Bso31I | GGTCTC | 1 cut(s) | 2415 |
| Bsp119I | TTCGAA | 1 cut(s) | 3235 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1102, 1135, 2887 |
| Bsp1407I | TGTACA | 1 cut(s) | 3655 |
| BspACI | CCGC | 9 cut(s) | 167, 218, 239, 242, 907, 2010, 2407, 2597, 3773 |
| BspANI | GGCC | 5 cut(s) | 1205, 1796, 2229, 2646, 3792 |
| BspCNI | CTCAG | 7 cut(s) | 891, 1344, 1696, 2347, 2539, 2971, 3798 |
| BspDI | ATCGAT | 1 cut(s) | 865 |
| BspFNI | CGCG | 2 cut(s) | 239, 1815 |
| BspHI | TCATGA | 1 cut(s) | 1465 |
| BspLI | GGNNCC | 7 cut(s) | 1416, 1890, 2092, 2390, 2873, 3350, 3933 |
| BspMAI | CTGCAG | 1 cut(s) | 3940 |
| BspMI | ACCTGC | 1 cut(s) | 1605 |
| BspOI | GCTAGC | 1 cut(s) | 786 |
| BspPI | GGATC | 7 cut(s) | 974, 1512, 2202, 2346, 3281, 3501, 3907 |
| BspQI | GCTCTTC | 1 cut(s) | 3315 |
| BspT104I | TTCGAA | 1 cut(s) | 3235 |
| BspTI | CTTAAG | 1 cut(s) | 3641 |
| BspTNI | GGTCTC | 1 cut(s) | 2415 |
| BsrDI | GCAATG | 5 cut(s) | 777, 2455, 2795, 3411, 3462 |
| BsrGI | TGTACA | 1 cut(s) | 3655 |
| BsrI | ACTGG | 6 cut(s) | 945, 1297, 2258, 2508, 2672, 3363 |
| BssECI | CCNNGG | 4 cut(s) | 1206, 1848, 2190, 3815 |
| BssNI | GRCGYC | 2 cut(s) | 91, 1087 |
| BssT1I | CCWWGG | 2 cut(s) | 1848, 2190 |
| Bst6I | CTCTTC | 8 cut(s) | 23, 120, 438, 642, 3219, 3315, 3539, 3822 |
| BstACI | GRCGYC | 2 cut(s) | 91, 1087 |
| BstAFI | CTTAAG | 1 cut(s) | 3641 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 1019, 1769, 2381 |
| BstAUI | TGTACA | 1 cut(s) | 3655 |
| BstBI | TTCGAA | 1 cut(s) | 3235 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1210, 1836 |
| BstFNI | CGCG | 2 cut(s) | 239, 1815 |
| BstH2I | RGCGCY | 1 cut(s) | 2168 |
| BstHHI | GCGC | 8 cut(s) | 239, 1324, 1763, 1815, 2167, 2256, 2971, 3805 |
| BstMAI | GTCTC | 5 cut(s) | 152, 2116, 2116, 2415, 2457 |
| BstNSI | RCATGY | 5 cut(s) | 1328, 1813, 2033, 2969, 3788 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 771, 1685 |
| BstSFI | CTRYAG | 3 cut(s) | 2914, 3512, 3936 |
| BstUI | CGCG | 2 cut(s) | 239, 1815 |
| BstV1I | GCAGC | 6 cut(s) | 685, 993, 1331, 1342, 1717, 2485 |
| BstV2I | GAAGAC | 5 cut(s) | 1681, 1757, 3155, 4056, 4065 |
| BstX2I | RGATCY | 5 cut(s) | 979, 2194, 2338, 3286, 3912 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1992 |
| BstYI | RGATCY | 5 cut(s) | 979, 2194, 2338, 3286, 3912 |
| Bsu15I | ATCGAT | 1 cut(s) | 865 |
| BsuI | GTATCC | 4 cut(s) | 654, 698, 1581, 3847 |
| BsuRI | GGCC | 5 cut(s) | 1205, 1796, 2229, 2646, 3792 |
| BsuTUI | ATCGAT | 1 cut(s) | 865 |
| BtgZI | GCGATG | 1 cut(s) | 2333 |
| BtrI | CACGTC | 2 cut(s) | 2901, 3295 |
| BtsI | GCAGTG | 2 cut(s) | 635, 3869 |
| BveI | ACCTGC | 1 cut(s) | 1605 |
| CaiI | CAGNNNCTG | 2 cut(s) | 2678, 3944 |
| CciI | TCATGA | 1 cut(s) | 1465 |
| CfoI | GCGC | 8 cut(s) | 239, 1324, 1763, 1815, 2167, 2256, 2971, 3805 |
| Cfr13I | GGNCC | 6 cut(s) | 1594, 1889, 3361, 3775, 3791, 3819 |
| ClaI | ATCGAT | 1 cut(s) | 865 |
| CpoI | CGGWCCG | 1 cut(s) | 3775 |
| CseI | GACGC | 4 cut(s) | 169, 1076, 2133, 2474 |
| Csp6I | GTAC | 7 cut(s) | 113, 225, 1094, 1349, 1427, 2983, 3656 |
| CspI | CGGWCCG | 1 cut(s) | 3775 |
| CviQI | GTAC | 7 cut(s) | 113, 225, 1094, 1349, 1427, 2983, 3656 |
| DraI | TTTAAA | 1 cut(s) | 1947 |
| DraIII | CACNNNGTG | 1 cut(s) | 1079 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1896 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2527 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1896 |
| EaeI | YGGCCR | 1 cut(s) | 2644 |
| Eam1104I | CTCTTC | 8 cut(s) | 23, 120, 438, 642, 3219, 3315, 3539, 3822 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2527 |
| EarI | CTCTTC | 8 cut(s) | 23, 120, 438, 642, 3219, 3315, 3539, 3822 |
| EciI | GGCGGA | 1 cut(s) | 257 |
| Ecl136II | GAGCTC | 1 cut(s) | 1100 |
| Eco130I | CCWWGG | 2 cut(s) | 1848, 2190 |
| Eco147I | AGGCCT | 1 cut(s) | 1796 |
| Eco24I | GRGCYC | 3 cut(s) | 1102, 1135, 2887 |
| Eco31I | GGTCTC | 1 cut(s) | 2415 |
| Eco32I | GATATC | 1 cut(s) | 3812 |
| Eco47I | GGWCC | 5 cut(s) | 1594, 1889, 3361, 3775, 3819 |
| Eco47III | AGCGCT | 1 cut(s) | 2166 |
| Eco53kI | GAGCTC | 1 cut(s) | 1100 |
| Eco57I | CTGAAG | 9 cut(s) | 72, 78, 566, 666, 854, 1049, 1502, 2936, 3171 |
| EcoICRI | GAGCTC | 1 cut(s) | 1100 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1210, 1836 |
| EcoRI | GAATTC | 1 cut(s) | 283 |
| EcoRV | GATATC | 1 cut(s) | 3812 |
| EcoT14I | CCWWGG | 2 cut(s) | 1848, 2190 |
| EcoT38I | GRGCYC | 3 cut(s) | 1102, 1135, 2887 |
| ErhI | CCWWGG | 2 cut(s) | 1848, 2190 |
| Esp3I | CGTCTC | 3 cut(s) | 152, 2116, 2457 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 2031, 2063, 2768, 2800 |
| FaqI | GGGAC | 3 cut(s) | 820, 1902, 2514 |
| FauI | CCCGC | 1 cut(s) | 2003 |
| FauNDI | CATATG | 2 cut(s) | 1757, 3304 |
| FbaI | TGATCA | 2 cut(s) | 726, 2515 |
| FriOI | GRGCYC | 3 cut(s) | 1102, 1135, 2887 |
| FspAI | RTGCGCAY | 1 cut(s) | 2970 |
| FspBI | CTAG | 9 cut(s) | 366, 399, 783, 929, 1241, 2115, 3176, 3452, 3842 |
| FspI | TGCGCA | 2 cut(s) | 1762, 2970 |
| GlaI | GCGC | 8 cut(s) | 238, 1323, 1762, 1814, 2166, 2255, 2970, 3804 |
| GsaI | CCCAGC | 5 cut(s) | 1086, 2388, 3348, 3699, 3747 |
| GsuI | CTGGAG | 4 cut(s) | 1968, 3237, 3299, 3743 |
| HaeII | RGCGCY | 1 cut(s) | 2168 |
| HaeIII | GGCC | 5 cut(s) | 1205, 1796, 2229, 2646, 3792 |
| HapII | CCGG | 6 cut(s) | 82, 329, 474, 959, 984, 2647 |
| HgaI | GACGC | 4 cut(s) | 169, 1076, 2133, 2474 |
| HhaI | GCGC | 8 cut(s) | 239, 1324, 1763, 1815, 2167, 2256, 2971, 3805 |
| Hin1I | GRCGYC | 2 cut(s) | 91, 1087 |
| Hin6I | GCGC | 8 cut(s) | 237, 1322, 1761, 1813, 2165, 2254, 2969, 3803 |
| HinP1I | GCGC | 8 cut(s) | 237, 1322, 1761, 1813, 2165, 2254, 2969, 3803 |
| HincII | GTYRAC | 2 cut(s) | 1050, 3598 |
| HindII | GTYRAC | 2 cut(s) | 1050, 3598 |
| HindIII | AAGCTT | 2 cut(s) | 600, 638 |
| HpaII | CCGG | 6 cut(s) | 82, 329, 474, 959, 984, 2647 |
| HphI | GGTGA | 2 cut(s) | 3241, 4067 |
| Hpy166II | GTNNAC | 8 cut(s) | 74, 1050, 1066, 2138, 2904, 3598, 3623, 3782 |
| Hpy8I | GTNNAC | 8 cut(s) | 74, 1050, 1066, 2138, 2904, 3598, 3623, 3782 |
| Hpy99I | CGWCG | 5 cut(s) | 11, 28, 93, 96, 3059 |
| HpyCH4IV | ACGT | 6 cut(s) | 91, 946, 2900, 3057, 3294, 3710 |
| HpySE526I | ACGT | 6 cut(s) | 91, 946, 2900, 3057, 3294, 3710 |
| Hsp92I | GRCGYC | 2 cut(s) | 91, 1087 |
| HspAI | GCGC | 8 cut(s) | 237, 1322, 1761, 1813, 2165, 2254, 2969, 3803 |
| Ksp22I | TGATCA | 2 cut(s) | 726, 2515 |
| LguI | GCTCTTC | 1 cut(s) | 3315 |
| LmnI | GCTCC | 7 cut(s) | 103, 1237, 1246, 1414, 2761, 3535, 3937 |
| Lsp1109I | GCAGC | 6 cut(s) | 685, 993, 1331, 1342, 1717, 2485 |
| MaeI | CTAG | 9 cut(s) | 366, 399, 783, 929, 1241, 2115, 3176, 3452, 3842 |
| MaeII | ACGT | 6 cut(s) | 91, 946, 2900, 3057, 3294, 3710 |
| MaeIII | GTNAC | 7 cut(s) | 760, 898, 1612, 2959, 3014, 3475, 3497 |
| MfeI | CAATTG | 1 cut(s) | 3114 |
| MflI | RGATCY | 5 cut(s) | 979, 2194, 2338, 3286, 3912 |
| MhlI | GDGCHC | 3 cut(s) | 1102, 1135, 2887 |
| MlyI | GAGTC | 4 cut(s) | 1129, 1675, 3494, 3856 |
| MmeI | TCCRAC | 2 cut(s) | 74, 3642 |
| MroXI | GAANNNNTTC | 7 cut(s) | 651, 948, 1398, 1455, 2655, 3558, 3627 |
| MslI | CAYNNNNRTG | 2 cut(s) | 3704, 4067 |
| MspA1I | CMGCKG | 2 cut(s) | 1027, 2599 |
| MspCI | CTTAAG | 1 cut(s) | 3641 |
| MspI | CCGG | 6 cut(s) | 82, 329, 474, 959, 984, 2647 |
| MunI | CAATTG | 1 cut(s) | 3114 |
| Mva1269I | GAATGC | 2 cut(s) | 325, 2274 |
| MvnI | CGCG | 2 cut(s) | 239, 1815 |
| NciI | CCSGG | 3 cut(s) | 475, 984, 2648 |
| NdeI | CATATG | 2 cut(s) | 1757, 3304 |
| NheI | GCTAGC | 1 cut(s) | 782 |
| NlaIV | GGNNCC | 7 cut(s) | 1416, 1890, 2092, 2390, 2873, 3350, 3933 |
| NmeAIII | GCCGAG | 2 cut(s) | 88, 246 |
| NmuCI | GTSAC | 6 cut(s) | 760, 898, 1612, 3014, 3475, 3497 |
| NsbI | TGCGCA | 2 cut(s) | 1762, 2970 |
| NspI | RCATGY | 5 cut(s) | 1328, 1813, 2033, 2969, 3788 |
| NspV | TTCGAA | 1 cut(s) | 3235 |
| PaeI | GCATGC | 2 cut(s) | 1813, 2969 |
| PagI | TCATGA | 1 cut(s) | 1465 |
| PceI | AGGCCT | 1 cut(s) | 1796 |
| PciI | ACATGT | 1 cut(s) | 3784 |
| PciSI | GCTCTTC | 1 cut(s) | 3315 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 85, 167, 3051, 3273 |
| PctI | GAATGC | 2 cut(s) | 325, 2274 |
| PdmI | GAANNNNTTC | 7 cut(s) | 651, 948, 1398, 1455, 2655, 3558, 3627 |
| PflFI | GACNNNGTC | 1 cut(s) | 1718 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 2614, 3432 |
| PfoI | TCCNGGA | 1 cut(s) | 3562 |
| PleI | GAGTC | 4 cut(s) | 1128, 1675, 3494, 3856 |
| PpsI | GAGTC | 4 cut(s) | 1128, 1675, 3494, 3856 |
| PscI | ACATGT | 1 cut(s) | 3784 |
| PshAI | GACNNNNGTC | 2 cut(s) | 771, 1685 |
| PsiI | TTATAA | 1 cut(s) | 2946 |
| Psp124BI | GAGCTC | 1 cut(s) | 1102 |
| PspFI | CCCAGC | 5 cut(s) | 1082, 2384, 3344, 3695, 3743 |
| PspN4I | GGNNCC | 7 cut(s) | 1416, 1890, 2092, 2390, 2873, 3350, 3933 |
| PspPI | GGNCC | 6 cut(s) | 1594, 1889, 3361, 3775, 3791, 3819 |
| PstI | CTGCAG | 1 cut(s) | 3940 |
| PstNI | CAGNNNCTG | 2 cut(s) | 2678, 3944 |
| PsuI | RGATCY | 5 cut(s) | 979, 2194, 2338, 3286, 3912 |
| PsyI | GACNNNGTC | 1 cut(s) | 1718 |
| PvuII | CAGCTG | 1 cut(s) | 1027 |
| RsaI | GTAC | 7 cut(s) | 114, 226, 1095, 1350, 1428, 2984, 3657 |
| RsaNI | GTAC | 7 cut(s) | 113, 225, 1094, 1349, 1427, 2983, 3656 |
| RseI | CAYNNNNRTG | 2 cut(s) | 3704, 4067 |
| Rsr2I | CGGWCCG | 1 cut(s) | 3775 |
| RsrII | CGGWCCG | 1 cut(s) | 3775 |
| SacI | GAGCTC | 1 cut(s) | 1102 |
| SapI | GCTCTTC | 1 cut(s) | 3315 |
| Sau96I | GGNCC | 6 cut(s) | 1594, 1889, 3361, 3775, 3791, 3819 |
| SchI | GAGTC | 4 cut(s) | 1129, 1675, 3494, 3856 |
| SduI | GDGCHC | 3 cut(s) | 1102, 1135, 2887 |
| SfcI | CTRYAG | 3 cut(s) | 2914, 3512, 3936 |
| SfuI | TTCGAA | 1 cut(s) | 3235 |
| SinI | GGWCC | 5 cut(s) | 1594, 1889, 3361, 3775, 3819 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 3704, 4067 |
| SmlI | CTYRAG | 4 cut(s) | 669, 2141, 3167, 3641 |
| SmoI | CTYRAG | 4 cut(s) | 669, 2141, 3167, 3641 |
| SpeI | ACTAGT | 1 cut(s) | 928 |
| SphI | GCATGC | 2 cut(s) | 1813, 2969 |
| SseBI | AGGCCT | 1 cut(s) | 1796 |
| SsiI | CCGC | 9 cut(s) | 167, 218, 239, 242, 907, 2010, 2407, 2597, 3773 |
| SspI | AATATT | 3 cut(s) | 1456, 1472, 2636 |
| SspMI | CTAG | 9 cut(s) | 366, 399, 783, 929, 1241, 2115, 3176, 3452, 3842 |
| SstI | GAGCTC | 1 cut(s) | 1102 |
| StuI | AGGCCT | 1 cut(s) | 1796 |
| StyI | CCWWGG | 2 cut(s) | 1848, 2190 |
| TaiI | ACGT | 6 cut(s) | 94, 949, 2903, 3060, 3297, 3713 |
| TatI | WGTACW | 3 cut(s) | 224, 1348, 3655 |
| TauI | GCSGC | 5 cut(s) | 170, 220, 242, 910, 2599 |
| TseFI | GTSAC | 6 cut(s) | 760, 898, 1612, 3014, 3475, 3497 |
| TseI | GCWGC | 6 cut(s) | 698, 1006, 1319, 1330, 1730, 2473 |
| Tsp45I | GTSAC | 6 cut(s) | 760, 898, 1612, 3014, 3475, 3497 |
| TspGWI | ACGGA | 1 cut(s) | 1620 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1718 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 2614, 3432 |
| Vha464I | CTTAAG | 1 cut(s) | 3641 |
| VpaK11BI | GGWCC | 5 cut(s) | 1594, 1889, 3361, 3775, 3819 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1210, 1836 |
| XapI | RAATTY | 4 cut(s) | 274, 283, 887, 3557 |
| XceI | RCATGY | 5 cut(s) | 1328, 1813, 2033, 2969, 3788 |
| XmnI | GAANNNNTTC | 7 cut(s) | 651, 948, 1398, 1455, 2655, 3558, 3627 |
| XspI | CTAG | 9 cut(s) | 366, 399, 783, 929, 1241, 2115, 3176, 3452, 3842 |
| ZraI | GACGTC | 1 cut(s) | 92 |