U5 small nuclear ribonucleoprotein 200 kDa
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Sec63 | PF02889 | 79 - 295 | 6.8e-60 | Sec63 Brl domain |
| DEAD | PF00270 | 358 - 444 | 4.7e-11 | DEAD/DEAH box helicase |
| WHD_SNRNP200 | PF23445 | 645 - 725 | 3.1e-31 | Winged Helix-turn-helix domain |
| Sec63 | PF02889 | 731 - 784 | 2e-12 | Sec63 Brl domain |
| Sec63 | PF02889 | 785 - 977 | 3.4e-23 | Sec63 Brl domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1290 |
| AatII | GACGTC | 1 cut(s) | 3052 |
| Acc36I | ACCTGC | 1 cut(s) | 1005 |
| Acc65I | GGTACC | 2 cut(s) | 948, 1472 |
| AccB1I | GGYRCC | 3 cut(s) | 948, 1472, 2969 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1248 |
| AccII | CGCG | 4 cut(s) | 1403, 3000, 3018, 3263 |
| AciI | CCGC | 9 cut(s) | 379, 1031, 1403, 1699, 1765, 2578, 2998, 3000, 3261 |
| AclWI | GGATC | 5 cut(s) | 154, 446, 1191, 1644, 3305 |
| AcoI | YGGCCR | 3 cut(s) | 380, 2995, 3001 |
| AcsI | RAATTY | 3 cut(s) | 88, 503, 3299 |
| AcuI | CTGAAG | 3 cut(s) | 334, 2060, 2295 |
| AcyI | GRCGYC | 3 cut(s) | 595, 2970, 3049 |
| AfaI | GTAC | 8 cut(s) | 603, 834, 950, 1474, 2108, 3085, 3212, 3361 |
| AflIII | ACRYGT | 4 cut(s) | 290, 808, 1615, 3431 |
| AhlI | ACTAGT | 1 cut(s) | 400 |
| AjnI | CCWGG | 4 cut(s) | 228, 2142, 2338, 2741 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 696, 728 |
| Alw21I | GWGCWC | 2 cut(s) | 610, 3115 |
| Alw26I | GTCTC | 5 cut(s) | 107, 569, 917, 1707, 3060 |
| Alw44I | GTGCAC | 1 cut(s) | 3111 |
| AlwI | GGATC | 5 cut(s) | 154, 446, 1191, 1644, 3305 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 926, 2870 |
| Ama87I | CYCGRG | 1 cut(s) | 2731 |
| ApaI | GGGCCC | 1 cut(s) | 3260 |
| ApaLI | GTGCAC | 1 cut(s) | 3111 |
| ApeKI | GCWGC | 6 cut(s) | 94, 170, 478, 803, 814, 1130 |
| ApoI | RAATTY | 3 cut(s) | 88, 503, 3299 |
| AseI | ATTAAT | 1 cut(s) | 468 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 420, 2586, 2598, 3212 |
| Asp718I | GGTACC | 2 cut(s) | 948, 1472 |
| AspLEI | GCGC | 1 cut(s) | 2972 |
| AsuHPI | GGTGA | 1 cut(s) | 758 |
| AsuNHI | GCTAGC | 1 cut(s) | 254 |
| AvaI | CYCGRG | 1 cut(s) | 2731 |
| AvaII | GGWCC | 7 cut(s) | 994, 1283, 2383, 2395, 2745, 2839, 2957 |
| BaeGI | GKGCMC | 2 cut(s) | 3115, 3260 |
| BanI | GGYRCC | 3 cut(s) | 948, 1472, 2969 |
| BanII | GRGCYC | 5 cut(s) | 610, 643, 2014, 2950, 3260 |
| BbsI | GAAGAC | 3 cut(s) | 1157, 2279, 3395 |
| Bbv12I | GWGCWC | 2 cut(s) | 610, 3115 |
| BbvCI | CCTCAGC | 1 cut(s) | 3252 |
| BbvI | GCAGC | 6 cut(s) | 106, 157, 465, 815, 826, 1117 |
| BciT130I | CCWGG | 4 cut(s) | 230, 2144, 2340, 2743 |
| BciVI | GTATCC | 2 cut(s) | 981, 2748 |
| BclI | TGATCA | 1 cut(s) | 198 |
| BcoDI | GTCTC | 5 cut(s) | 107, 569, 917, 1707, 3060 |
| BcuI | ACTAGT | 1 cut(s) | 400 |
| BfaI | CTAG | 6 cut(s) | 255, 401, 1608, 2300, 2768, 2928 |
| BfmI | CTRYAG | 3 cut(s) | 2041, 2862, 3315 |
| BfoI | RGCGCY | 1 cut(s) | 2973 |
| BfuAI | ACCTGC | 1 cut(s) | 1005 |
| BfuI | GTATCC | 2 cut(s) | 981, 2748 |
| BmcAI | AGTACT | 1 cut(s) | 3212 |
| Bme1390I | CCNGG | 4 cut(s) | 230, 2144, 2340, 2743 |
| Bme18I | GGWCC | 7 cut(s) | 994, 1283, 2383, 2395, 2745, 2839, 2957 |
| BmeT110I | CYCGRG | 1 cut(s) | 2731 |
| BmrFI | CCNGG | 4 cut(s) | 230, 2144, 2340, 2743 |
| BmrI | ACTGGG | 2 cut(s) | 450, 3020 |
| BmtI | GCTAGC | 1 cut(s) | 258 |
| BmuI | ACTGGG | 2 cut(s) | 450, 3020 |
| BoxI | GACNNNNGTC | 1 cut(s) | 243 |
| BpiI | GAAGAC | 3 cut(s) | 1157, 2279, 3395 |
| BpmI | CTGGAG | 3 cut(s) | 1361, 1476, 2361 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1632, 3147, 3252 |
| BpuEI | CTTGAG | 4 cut(s) | 1411, 2312, 2423, 3098 |
| BsaAI | YACGTR | 1 cut(s) | 3434 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1367 |
| BsaHI | GRCGYC | 3 cut(s) | 595, 2970, 3049 |
| BsaI | GGTCTC | 1 cut(s) | 1707 |
| BsaJI | CCNNGG | 8 cut(s) | 722, 1242, 1446, 2732, 2741, 2998, 3116, 3276 |
| Bse118I | RCCGGY | 1 cut(s) | 3003 |
| Bse1I | ACTGG | 6 cut(s) | 456, 781, 1265, 1800, 2842, 3015 |
| Bse3DI | GCAATG | 5 cut(s) | 249, 1747, 1922, 2467, 2496 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1367 |
| BseBI | CCWGG | 4 cut(s) | 230, 2144, 2340, 2743 |
| BseDI | CCNNGG | 8 cut(s) | 722, 1242, 1446, 2732, 2741, 2998, 3116, 3276 |
| BseJI | GATNNNNATC | 1 cut(s) | 1367 |
| BseMI | GCAATG | 5 cut(s) | 249, 1747, 1922, 2467, 2496 |
| BseMII | CTCAG | 9 cut(s) | 827, 1097, 1646, 2094, 3002, 3047, 3113, 3161, 3243 |
| BseNI | ACTGG | 6 cut(s) | 456, 781, 1265, 1800, 2842, 3015 |
| BseRI | GAGGAG | 1 cut(s) | 1875 |
| BseSI | GKGCMC | 2 cut(s) | 3115, 3260 |
| BseX3I | CGGCCG | 2 cut(s) | 380, 3001 |
| BseXI | GCAGC | 6 cut(s) | 106, 157, 465, 815, 826, 1117 |
| BseYI | CCCAGC | 3 cut(s) | 590, 2378, 2680 |
| BsgI | GTGCAG | 4 cut(s) | 477, 833, 1116, 1182 |
| Bsh1236I | CGCG | 4 cut(s) | 1403, 3000, 3018, 3263 |
| Bsh1285I | CGRYCG | 6 cut(s) | 383, 2916, 2937, 2977, 3004, 3025 |
| BshNI | GGYRCC | 3 cut(s) | 948, 1472, 2969 |
| BsiEI | CGRYCG | 6 cut(s) | 383, 2916, 2937, 2977, 3004, 3025 |
| BsiHKAI | GWGCWC | 2 cut(s) | 610, 3115 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2731 |
| BsiSI | CCGG | 2 cut(s) | 383, 3004 |
| BslFI | GGGAC | 5 cut(s) | 292, 1296, 1806, 2396, 2792 |
| BsmAI | GTCTC | 5 cut(s) | 107, 569, 917, 1707, 3060 |
| BsmBI | CGTCTC | 1 cut(s) | 107 |
| BsmFI | GGGAC | 5 cut(s) | 292, 1296, 1806, 2396, 2792 |
| BsmI | GAATGC | 1 cut(s) | 717 |
| Bso31I | GGTCTC | 1 cut(s) | 1707 |
| BsoBI | CYCGRG | 1 cut(s) | 2731 |
| Bsp120I | GGGCCC | 1 cut(s) | 3256 |
| Bsp1286I | GDGCHC | 6 cut(s) | 610, 643, 2014, 2950, 3115, 3260 |
| Bsp19I | CCATGG | 2 cut(s) | 722, 3276 |
| Bsp68I | TCGCGA | 1 cut(s) | 3018 |
| BspACI | CCGC | 9 cut(s) | 379, 1031, 1403, 1699, 1765, 2578, 2998, 3000, 3261 |
| BspCNI | CTCAG | 9 cut(s) | 828, 1096, 1645, 2095, 3001, 3046, 3112, 3160, 3244 |
| BspFNI | CGCG | 4 cut(s) | 1403, 3000, 3018, 3263 |
| BspHI | TCATGA | 1 cut(s) | 1513 |
| BspMAI | CTGCAG | 2 cut(s) | 2866, 3319 |
| BspMI | ACCTGC | 1 cut(s) | 1005 |
| BspOI | GCTAGC | 1 cut(s) | 258 |
| BspPI | GGATC | 5 cut(s) | 154, 446, 1191, 1644, 3305 |
| BspT107I | GGYRCC | 3 cut(s) | 948, 1472, 2969 |
| BspTNI | GGTCTC | 1 cut(s) | 1707 |
| BsrDI | GCAATG | 5 cut(s) | 249, 1747, 1922, 2467, 2496 |
| BsrFI | RCCGGY | 1 cut(s) | 3003 |
| BsrI | ACTGG | 6 cut(s) | 456, 781, 1265, 1800, 2842, 3015 |
| BssAI | RCCGGY | 1 cut(s) | 3003 |
| BssECI | CCNNGG | 8 cut(s) | 722, 1242, 1446, 2732, 2741, 2998, 3116, 3276 |
| BssNI | GRCGYC | 3 cut(s) | 595, 2970, 3049 |
| BssT1I | CCWWGG | 4 cut(s) | 722, 1242, 1446, 3276 |
| Bst2UI | CCWGG | 4 cut(s) | 230, 2144, 2340, 2743 |
| Bst6I | CTCTTC | 5 cut(s) | 351, 2343, 2727, 2748, 3125 |
| BstACI | GRCGYC | 3 cut(s) | 595, 2970, 3049 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 491, 1169 |
| BstBAI | YACGTR | 1 cut(s) | 3434 |
| BstC8I | GCNNGC | 5 cut(s) | 256, 483, 2458, 2532, 2802 |
| BstDSI | CCRYGG | 4 cut(s) | 722, 2998, 3116, 3276 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1230, 1353 |
| BstFNI | CGCG | 4 cut(s) | 1403, 3000, 3018, 3263 |
| BstH2I | RGCGCY | 1 cut(s) | 2973 |
| BstHHI | GCGC | 1 cut(s) | 2972 |
| BstMAI | GTCTC | 5 cut(s) | 107, 569, 917, 1707, 3060 |
| BstMCI | CGRYCG | 6 cut(s) | 383, 2916, 2937, 2977, 3004, 3025 |
| BstNI | CCWGG | 4 cut(s) | 230, 2144, 2340, 2743 |
| BstNSI | RCATGY | 4 cut(s) | 294, 812, 1571, 1619 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 243 |
| BstSCI | CCNGG | 4 cut(s) | 228, 2142, 2338, 2741 |
| BstSFI | CTRYAG | 3 cut(s) | 2041, 2862, 3315 |
| BstSLI | GKGCMC | 2 cut(s) | 3115, 3260 |
| BstUI | CGCG | 4 cut(s) | 1403, 3000, 3018, 3263 |
| BstV1I | GCAGC | 6 cut(s) | 106, 157, 465, 815, 826, 1117 |
| BstV2I | GAAGAC | 3 cut(s) | 1157, 2279, 3395 |
| BstX2I | RGATCY | 3 cut(s) | 159, 451, 1636 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1385 |
| BstYI | RGATCY | 3 cut(s) | 159, 451, 1636 |
| BstZI | CGGCCG | 2 cut(s) | 380, 3001 |
| BsuI | GTATCC | 2 cut(s) | 981, 2748 |
| BtgI | CCRYGG | 4 cut(s) | 722, 2998, 3116, 3276 |
| BtgZI | GCGATG | 2 cut(s) | 3278, 3390 |
| BtsI | GCAGTG | 1 cut(s) | 2795 |
| BtuMI | TCGCGA | 1 cut(s) | 3018 |
| BveI | ACCTGC | 1 cut(s) | 1005 |
| Cac8I | GCNNGC | 5 cut(s) | 256, 483, 2458, 2532, 2802 |
| CaiI | CAGNNNCTG | 2 cut(s) | 926, 2870 |
| CciI | TCATGA | 1 cut(s) | 1513 |
| CfoI | GCGC | 1 cut(s) | 2972 |
| Cfr10I | RCCGGY | 1 cut(s) | 3003 |
| Cfr42I | CCGCGG | 1 cut(s) | 3001 |
| CseI | GACGC | 2 cut(s) | 584, 1766 |
| Csp6I | GTAC | 8 cut(s) | 602, 833, 949, 1473, 2107, 3084, 3211, 3360 |
| CviQI | GTAC | 8 cut(s) | 602, 833, 949, 1473, 2107, 3084, 3211, 3360 |
| DinI | GGCGCC | 1 cut(s) | 2971 |
| DraI | TTTAAA | 1 cut(s) | 1341 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1290 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1290 |
| EaeI | YGGCCR | 3 cut(s) | 380, 2995, 3001 |
| EagI | CGGCCG | 2 cut(s) | 380, 3001 |
| Eam1104I | CTCTTC | 5 cut(s) | 351, 2343, 2727, 2748, 3125 |
| EarI | CTCTTC | 5 cut(s) | 351, 2343, 2727, 2748, 3125 |
| Ecl136II | GAGCTC | 1 cut(s) | 608 |
| EclXI | CGGCCG | 2 cut(s) | 380, 3001 |
| Eco130I | CCWWGG | 4 cut(s) | 722, 1242, 1446, 3276 |
| Eco147I | AGGCCT | 1 cut(s) | 1196 |
| Eco24I | GRGCYC | 5 cut(s) | 610, 643, 2014, 2950, 3260 |
| Eco31I | GGTCTC | 1 cut(s) | 1707 |
| Eco32I | GATATC | 1 cut(s) | 740 |
| Eco47I | GGWCC | 7 cut(s) | 994, 1283, 2383, 2395, 2745, 2839, 2957 |
| Eco52I | CGGCCG | 2 cut(s) | 380, 3001 |
| Eco53kI | GAGCTC | 1 cut(s) | 608 |
| Eco57I | CTGAAG | 3 cut(s) | 334, 2060, 2295 |
| Eco88I | CYCGRG | 1 cut(s) | 2731 |
| EcoICRI | GAGCTC | 1 cut(s) | 608 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1230, 1353 |
| EcoO109I | RGGNCCY | 3 cut(s) | 2383, 3256, 3257 |
| EcoRI | GAATTC | 1 cut(s) | 3299 |
| EcoRII | CCWGG | 4 cut(s) | 228, 2142, 2338, 2741 |
| EcoRV | GATATC | 1 cut(s) | 740 |
| EcoT14I | CCWWGG | 4 cut(s) | 722, 1242, 1446, 3276 |
| EcoT38I | GRGCYC | 5 cut(s) | 610, 643, 2014, 2950, 3260 |
| EgeI | GGCGCC | 1 cut(s) | 2971 |
| EheI | GGCGCC | 1 cut(s) | 2971 |
| ErhI | CCWWGG | 4 cut(s) | 722, 1242, 1446, 3276 |
| Esp3I | CGTCTC | 1 cut(s) | 107 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 122, 154, 1895, 1927 |
| FaqI | GGGAC | 5 cut(s) | 292, 1296, 1806, 2396, 2792 |
| FauI | CCCGC | 2 cut(s) | 2571, 3268 |
| FauNDI | CATATG | 3 cut(s) | 109, 1157, 2604 |
| FbaI | TGATCA | 1 cut(s) | 198 |
| FriOI | GRGCYC | 5 cut(s) | 610, 643, 2014, 2950, 3260 |
| FspBI | CTAG | 6 cut(s) | 255, 401, 1608, 2300, 2768, 2928 |
| GlaI | GCGC | 1 cut(s) | 2971 |
| GsaI | CCCAGC | 3 cut(s) | 594, 2382, 2684 |
| GsuI | CTGGAG | 3 cut(s) | 1361, 1476, 2361 |
| HaeII | RGCGCY | 1 cut(s) | 2973 |
| HapII | CCGG | 2 cut(s) | 383, 3004 |
| HgaI | GACGC | 2 cut(s) | 584, 1766 |
| HhaI | GCGC | 1 cut(s) | 2972 |
| Hin1I | GRCGYC | 3 cut(s) | 595, 2970, 3049 |
| Hin6I | GCGC | 1 cut(s) | 2970 |
| HinP1I | GCGC | 1 cut(s) | 2970 |
| HincII | GTYRAC | 1 cut(s) | 3123 |
| HindII | GTYRAC | 1 cut(s) | 3123 |
| HinfI | GANTC | 7 cut(s) | 1027, 1081, 1374, 2059, 2194, 2296, 2906 |
| HpaII | CCGG | 2 cut(s) | 383, 3004 |
| HphI | GGTGA | 1 cut(s) | 758 |
| Hpy166II | GTNNAC | 5 cut(s) | 148, 538, 3113, 3123, 3362 |
| Hpy8I | GTNNAC | 5 cut(s) | 148, 538, 3113, 3123, 3362 |
| Hpy99I | CGWCG | 4 cut(s) | 1839, 2942, 3023, 3054 |
| HpyCH4IV | ACGT | 3 cut(s) | 116, 3049, 3433 |
| HpySE526I | ACGT | 3 cut(s) | 116, 3049, 3433 |
| Hsp92I | GRCGYC | 3 cut(s) | 595, 2970, 3049 |
| HspAI | GCGC | 1 cut(s) | 2970 |
| KasI | GGCGCC | 1 cut(s) | 2969 |
| KpnI | GGTACC | 2 cut(s) | 952, 1476 |
| Ksp22I | TGATCA | 1 cut(s) | 198 |
| KspI | CCGCGG | 1 cut(s) | 3001 |
| LmnI | GCTCC | 5 cut(s) | 897, 1888, 2527, 2863, 3280 |
| Lsp1109I | GCAGC | 6 cut(s) | 106, 157, 465, 815, 826, 1117 |
| MaeI | CTAG | 6 cut(s) | 255, 401, 1608, 2300, 2768, 2928 |
| MaeII | ACGT | 3 cut(s) | 116, 3049, 3433 |
| MaeIII | GTNAC | 6 cut(s) | 232, 1012, 1802, 2083, 2978, 3006 |
| MfeI | CAATTG | 3 cut(s) | 338, 1557, 2238 |
| MflI | RGATCY | 3 cut(s) | 159, 451, 1636 |
| MhlI | GDGCHC | 6 cut(s) | 610, 643, 2014, 2950, 3115, 3260 |
| Mly113I | GGCGCC | 1 cut(s) | 2970 |
| MlyI | GAGTC | 2 cut(s) | 1075, 1368 |
| MmeI | TCCRAC | 2 cut(s) | 1645, 2601 |
| MroXI | GAANNNNTTC | 4 cut(s) | 420, 2586, 2598, 3212 |
| MslI | CAYNNNNRTG | 2 cut(s) | 2489, 2663 |
| MspA1I | CMGCKG | 2 cut(s) | 499, 3000 |
| MspI | CCGG | 2 cut(s) | 383, 3004 |
| MspR9I | CCNGG | 4 cut(s) | 230, 2144, 2340, 2743 |
| MunI | CAATTG | 3 cut(s) | 338, 1557, 2238 |
| Mva1269I | GAATGC | 1 cut(s) | 717 |
| MvaI | CCWGG | 4 cut(s) | 230, 2144, 2340, 2743 |
| MvnI | CGCG | 4 cut(s) | 1403, 3000, 3018, 3263 |
| NarI | GGCGCC | 1 cut(s) | 2970 |
| NcoI | CCATGG | 2 cut(s) | 722, 3276 |
| NdeI | CATATG | 3 cut(s) | 109, 1157, 2604 |
| NheI | GCTAGC | 1 cut(s) | 254 |
| NmeAIII | GCCGAG | 2 cut(s) | 3065, 3089 |
| NmuCI | GTSAC | 4 cut(s) | 232, 1012, 1802, 3006 |
| NruI | TCGCGA | 1 cut(s) | 3018 |
| NspI | RCATGY | 4 cut(s) | 294, 812, 1571, 1619 |
| PagI | TCATGA | 1 cut(s) | 1513 |
| PceI | AGGCCT | 1 cut(s) | 1196 |
| PciI | ACATGT | 3 cut(s) | 290, 808, 1615 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 3022, 3413 |
| PctI | GAATGC | 1 cut(s) | 717 |
| PdmI | GAANNNNTTC | 4 cut(s) | 420, 2586, 2598, 3212 |
| PfeI | GAWTC | 5 cut(s) | 1027, 2059, 2194, 2296, 2906 |
| PflFI | GACNNNGTC | 1 cut(s) | 1118 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1248 |
| Ple19I | CGATCG | 1 cut(s) | 2977 |
| PleI | GAGTC | 2 cut(s) | 1075, 1368 |
| PluTI | GGCGCC | 1 cut(s) | 2973 |
| PpsI | GAGTC | 2 cut(s) | 1075, 1368 |
| Ppu21I | YACGTR | 1 cut(s) | 3434 |
| PpuMI | RGGWCCY | 1 cut(s) | 2383 |
| PscI | ACATGT | 3 cut(s) | 290, 808, 1615 |
| PshAI | GACNNNNGTC | 1 cut(s) | 243 |
| PshBI | ATTAAT | 1 cut(s) | 468 |
| Psp124BI | GAGCTC | 1 cut(s) | 610 |
| Psp5II | RGGWCCY | 1 cut(s) | 2383 |
| Psp6I | CCWGG | 4 cut(s) | 228, 2142, 2338, 2741 |
| PspFI | CCCAGC | 3 cut(s) | 590, 2378, 2680 |
| PspGI | CCWGG | 4 cut(s) | 228, 2142, 2338, 2741 |
| PspOMI | GGGCCC | 1 cut(s) | 3256 |
| PspPPI | RGGWCCY | 1 cut(s) | 2383 |
| PstI | CTGCAG | 2 cut(s) | 2866, 3319 |
| PstNI | CAGNNNCTG | 2 cut(s) | 926, 2870 |
| PsuI | RGATCY | 3 cut(s) | 159, 451, 1636 |
| PsyI | GACNNNGTC | 1 cut(s) | 1118 |
| PvuI | CGATCG | 1 cut(s) | 2977 |
| PvuII | CAGCTG | 1 cut(s) | 499 |
| RruI | TCGCGA | 1 cut(s) | 3018 |
| RsaI | GTAC | 8 cut(s) | 603, 834, 950, 1474, 2108, 3085, 3212, 3361 |
| RsaNI | GTAC | 8 cut(s) | 602, 833, 949, 1473, 2107, 3084, 3211, 3360 |
| RseI | CAYNNNNRTG | 2 cut(s) | 2489, 2663 |
| SacI | GAGCTC | 1 cut(s) | 610 |
| SacII | CCGCGG | 1 cut(s) | 3001 |
| ScaI | AGTACT | 1 cut(s) | 3212 |
| SchI | GAGTC | 2 cut(s) | 1075, 1368 |
| ScrFI | CCNGG | 4 cut(s) | 230, 2144, 2340, 2743 |
| SduI | GDGCHC | 6 cut(s) | 610, 643, 2014, 2950, 3115, 3260 |
| SfcI | CTRYAG | 3 cut(s) | 2041, 2862, 3315 |
| SfoI | GGCGCC | 1 cut(s) | 2971 |
| Sfr303I | CCGCGG | 1 cut(s) | 3001 |
| SgrBI | CCGCGG | 1 cut(s) | 3001 |
| SinI | GGWCC | 7 cut(s) | 994, 1283, 2383, 2395, 2745, 2839, 2957 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 2489, 2663 |
| SmlI | CTYRAG | 4 cut(s) | 1426, 2291, 2402, 3077 |
| SmoI | CTYRAG | 4 cut(s) | 1426, 2291, 2402, 3077 |
| SpeI | ACTAGT | 1 cut(s) | 400 |
| SseBI | AGGCCT | 1 cut(s) | 1196 |
| SsiI | CCGC | 9 cut(s) | 379, 1031, 1403, 1699, 1765, 2578, 2998, 3000, 3261 |
| SspDI | GGCGCC | 1 cut(s) | 2969 |
| SspI | AATATT | 2 cut(s) | 2208, 2442 |
| SspMI | CTAG | 6 cut(s) | 255, 401, 1608, 2300, 2768, 2928 |
| SstI | GAGCTC | 1 cut(s) | 610 |
| StuI | AGGCCT | 1 cut(s) | 1196 |
| StyD4I | CCNGG | 4 cut(s) | 228, 2142, 2338, 2741 |
| StyI | CCWWGG | 4 cut(s) | 722, 1242, 1446, 3276 |
| TaiI | ACGT | 3 cut(s) | 119, 3052, 3436 |
| TaqI | TCGA | 4 cut(s) | 287, 615, 826, 2940 |
| TaqII | GACCGA | 3 cut(s) | 2902, 2923, 3365 |
| TatI | WGTACW | 2 cut(s) | 832, 3210 |
| TauI | GCSGC | 4 cut(s) | 382, 1768, 3000, 3003 |
| TfiI | GAWTC | 5 cut(s) | 1027, 2059, 2194, 2296, 2906 |
| TseFI | GTSAC | 4 cut(s) | 232, 1012, 1802, 3006 |
| TseI | GCWGC | 6 cut(s) | 94, 170, 478, 803, 814, 1130 |
| Tsp45I | GTSAC | 4 cut(s) | 232, 1012, 1802, 3006 |
| TspGWI | ACGGA | 1 cut(s) | 3152 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1118 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1248 |
| VneI | GTGCAC | 1 cut(s) | 3111 |
| VpaK11BI | GGWCC | 7 cut(s) | 994, 1283, 2383, 2395, 2745, 2839, 2957 |
| VspI | ATTAAT | 1 cut(s) | 468 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1230, 1353 |
| XapI | RAATTY | 3 cut(s) | 88, 503, 3299 |
| XceI | RCATGY | 4 cut(s) | 294, 812, 1571, 1619 |
| XmnI | GAANNNNTTC | 4 cut(s) | 420, 2586, 2598, 3212 |
| XspI | CTAG | 6 cut(s) | 255, 401, 1608, 2300, 2768, 2928 |
| ZraI | GACGTC | 1 cut(s) | 3050 |
| ZrmI | AGTACT | 1 cut(s) | 3212 |