U5 small nuclear ribonucleoprotein 200 kDa
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Helicase_PWI | PF18149 | 185 - 292 | 6.3e-31 | N-terminal helicase PWI domain |
| DEAD | PF00270 | 423 - 574 | 2.6e-23 | DEAD/DEAH box helicase |
| Helicase_C | PF00271 | 643 - 739 | 1.3e-08 | Helicase conserved C-terminal domain |
| WHD_SNRNP200 | PF23445 | 770 - 838 | 2.4e-22 | Winged Helix-turn-helix domain |
| Sec63 | PF02889 | 909 - 1052 | 2e-58 | Sec63 Brl domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 726, 1350 |
| AatII | GACGTC | 1 cut(s) | 187 |
| AccB1I | GGYRCC | 1 cut(s) | 1075 |
| AccI | GTMKAC | 1 cut(s) | 1359 |
| AccIII | TCCGGA | 2 cut(s) | 1096, 1541 |
| AciI | CCGC | 7 cut(s) | 89, 260, 311, 960, 2020, 2869, 3164 |
| AclWI | GGATC | 7 cut(s) | 2043, 2572, 2644, 2657, 2936, 3225, 3238 |
| AcsI | RAATTY | 3 cut(s) | 730, 1590, 1920 |
| AcuI | CTGAAG | 7 cut(s) | 165, 171, 572, 672, 822, 1410, 3011 |
| AcyI | GRCGYC | 3 cut(s) | 184, 1431, 3049 |
| AdeI | CACNNNGTG | 2 cut(s) | 2843, 3041 |
| AfaI | GTAC | 6 cut(s) | 74, 716, 1552, 1888, 2405, 3057 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 489, 2026, 2673, 2807 |
| AflIII | ACRYGT | 2 cut(s) | 1738, 2908 |
| AhlI | ACTAGT | 1 cut(s) | 2890 |
| AjnI | CCWGG | 4 cut(s) | 160, 2133, 2718, 2934 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 2343, 2375, 2604, 2636, 3150, 3182 |
| Alw21I | GWGCWC | 3 cut(s) | 785, 2644, 3064 |
| Alw26I | GTCTC | 5 cut(s) | 245, 1038, 1481, 1803, 2074 |
| Alw44I | GTGCAC | 2 cut(s) | 781, 2640 |
| AlwI | GGATC | 7 cut(s) | 2043, 2572, 2644, 2657, 2936, 3225, 3238 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1465 |
| Aor13HI | TCCGGA | 2 cut(s) | 1096, 1541 |
| AoxI | GGCC | 3 cut(s) | 1615, 1756, 1784 |
| ApaLI | GTGCAC | 2 cut(s) | 781, 2640 |
| ApeKI | GCWGC | 5 cut(s) | 841, 957, 1039, 2660, 2968 |
| ApoI | RAATTY | 3 cut(s) | 730, 1590, 1920 |
| AseI | ATTAAT | 1 cut(s) | 690 |
| Asp700I | GAANNNNTTC | 6 cut(s) | 657, 773, 1140, 1923, 2355, 2910 |
| AspS9I | GGNCC | 4 cut(s) | 868, 1616, 1756, 2130 |
| AsuC2I | CCSGG | 1 cut(s) | 484 |
| AsuHPI | GGTGA | 7 cut(s) | 1019, 1450, 1466, 1495, 2461, 3161, 3214 |
| AsuNHI | GCTAGC | 1 cut(s) | 2744 |
| AvaII | GGWCC | 2 cut(s) | 868, 2130 |
| BaeGI | GKGCMC | 3 cut(s) | 785, 2259, 2644 |
| BamHI | GGATCC | 2 cut(s) | 2649, 3230 |
| BanI | GGYRCC | 1 cut(s) | 1075 |
| BanII | GRGCYC | 2 cut(s) | 1222, 3064 |
| BauI | CACGAG | 4 cut(s) | 5, 795, 1565, 1845 |
| BbsI | GAAGAC | 4 cut(s) | 88, 411, 1908, 2218 |
| Bbv12I | GWGCWC | 3 cut(s) | 785, 2644, 3064 |
| BbvI | GCAGC | 5 cut(s) | 828, 969, 1026, 2647, 2955 |
| BciT130I | CCWGG | 4 cut(s) | 162, 2135, 2720, 2936 |
| BciVI | GTATCC | 1 cut(s) | 1251 |
| BclI | TGATCA | 1 cut(s) | 2688 |
| BcnI | CCSGG | 1 cut(s) | 484 |
| BcoDI | GTCTC | 5 cut(s) | 245, 1038, 1481, 1803, 2074 |
| BcuI | ACTAGT | 1 cut(s) | 2890 |
| BfaI | CTAG | 9 cut(s) | 891, 981, 1065, 1410, 1533, 1668, 2745, 2891, 3250 |
| BfuI | GTATCC | 1 cut(s) | 1251 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 887 |
| BglII | AGATCT | 1 cut(s) | 1112 |
| BisI | GCNGC | 9 cut(s) | 261, 311, 842, 958, 1040, 2661, 2870, 2969, 3164 |
| BlsI | GCNGC | 9 cut(s) | 262, 312, 843, 959, 1041, 2662, 2871, 2970, 3165 |
| Bme1390I | CCNGG | 5 cut(s) | 162, 484, 2135, 2720, 2936 |
| Bme18I | GGWCC | 2 cut(s) | 868, 2130 |
| BmgT120I | GGNCC | 4 cut(s) | 868, 1616, 1756, 2130 |
| BmiI | GGNNCC | 5 cut(s) | 1077, 2131, 2132, 2651, 3232 |
| BmrFI | CCNGG | 5 cut(s) | 162, 484, 2135, 2720, 2936 |
| BmrI | ACTGGG | 3 cut(s) | 2262, 2569, 2940 |
| BmsI | GCATC | 7 cut(s) | 130, 325, 565, 616, 828, 866, 2134 |
| BmtI | GCTAGC | 1 cut(s) | 2748 |
| BmuI | ACTGGG | 3 cut(s) | 2262, 2569, 2940 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2733 |
| BpiI | GAAGAC | 4 cut(s) | 88, 411, 1908, 2218 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 11, 43, 1313, 1345 |
| BpuEI | CTTGAG | 1 cut(s) | 660 |
| BpuMI | CCSGG | 1 cut(s) | 484 |
| Bsa29I | ATCGAT | 2 cut(s) | 860, 2827 |
| BsaAI | YACGTR | 1 cut(s) | 1739 |
| BsaHI | GRCGYC | 3 cut(s) | 184, 1431, 3049 |
| BsaI | GGTCTC | 1 cut(s) | 2074 |
| BsaJI | CCNNGG | 3 cut(s) | 1882, 2133, 3178 |
| BsaWI | WCCGGW | 3 cut(s) | 1096, 1541, 2920 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 489, 2026, 2673, 2807 |
| Bse118I | RCCGGY | 3 cut(s) | 14, 85, 2104 |
| Bse1I | ACTGG | 6 cut(s) | 871, 1030, 2257, 2399, 2564, 2946 |
| Bse3DI | GCAATG | 3 cut(s) | 547, 1161, 2739 |
| BseAI | TCCGGA | 2 cut(s) | 1096, 1541 |
| BseBI | CCWGG | 4 cut(s) | 162, 2135, 2720, 2936 |
| BseCI | ATCGAT | 2 cut(s) | 860, 2827 |
| BseDI | CCNNGG | 3 cut(s) | 1882, 2133, 3178 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 489, 2026, 2673, 2807 |
| BseMI | GCAATG | 3 cut(s) | 547, 1161, 2739 |
| BseMII | CTCAG | 5 cut(s) | 1049, 1259, 1503, 2231, 2854 |
| BseNI | ACTGG | 6 cut(s) | 871, 1030, 2257, 2399, 2564, 2946 |
| BseRI | GAGGAG | 5 cut(s) | 428, 470, 845, 848, 2504 |
| BseSI | GKGCMC | 3 cut(s) | 785, 2259, 2644 |
| BseXI | GCAGC | 5 cut(s) | 828, 969, 1026, 2647, 2955 |
| BseYI | CCCAGC | 2 cut(s) | 2000, 3044 |
| BsgI | GTGCAG | 6 cut(s) | 458, 584, 731, 1848, 2226, 2613 |
| BshFI | GGCC | 3 cut(s) | 1617, 1758, 1786 |
| BshNI | GGYRCC | 1 cut(s) | 1075 |
| BshVI | ATCGAT | 2 cut(s) | 860, 2827 |
| BsiHKAI | GWGCWC | 3 cut(s) | 785, 2644, 3064 |
| BsiSI | CCGG | 9 cut(s) | 15, 23, 86, 175, 483, 1097, 1542, 2105, 2921 |
| BslFI | GGGAC | 5 cut(s) | 986, 1002, 1775, 2143, 2782 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 489, 2026, 2673, 2807 |
| BsmAI | GTCTC | 5 cut(s) | 245, 1038, 1481, 1803, 2074 |
| BsmBI | CGTCTC | 1 cut(s) | 245 |
| BsmFI | GGGAC | 5 cut(s) | 986, 1002, 1775, 2143, 2782 |
| BsmI | GAATGC | 2 cut(s) | 1229, 2350 |
| BsnI | GGCC | 3 cut(s) | 1617, 1758, 1786 |
| Bso31I | GGTCTC | 1 cut(s) | 2074 |
| Bsp1286I | GDGCHC | 5 cut(s) | 785, 1222, 2259, 2644, 3064 |
| Bsp13I | TCCGGA | 2 cut(s) | 1096, 1541 |
| Bsp19I | CCATGG | 1 cut(s) | 3178 |
| BspACI | CCGC | 7 cut(s) | 89, 260, 311, 960, 2020, 2869, 3164 |
| BspANI | GGCC | 3 cut(s) | 1617, 1758, 1786 |
| BspCNI | CTCAG | 5 cut(s) | 1048, 1258, 1504, 2230, 2853 |
| BspDI | ATCGAT | 2 cut(s) | 860, 2827 |
| BspEI | TCCGGA | 2 cut(s) | 1096, 1541 |
| BspLI | GGNNCC | 5 cut(s) | 1077, 2131, 2132, 2651, 3232 |
| BspOI | GCTAGC | 1 cut(s) | 2748 |
| BspPI | GGATC | 7 cut(s) | 2043, 2572, 2644, 2657, 2936, 3225, 3238 |
| BspT107I | GGYRCC | 1 cut(s) | 1075 |
| BspTNI | GGTCTC | 1 cut(s) | 2074 |
| BsrDI | GCAATG | 3 cut(s) | 547, 1161, 2739 |
| BsrFI | RCCGGY | 3 cut(s) | 14, 85, 2104 |
| BsrI | ACTGG | 6 cut(s) | 871, 1030, 2257, 2399, 2564, 2946 |
| BssAI | RCCGGY | 3 cut(s) | 14, 85, 2104 |
| BssECI | CCNNGG | 3 cut(s) | 1882, 2133, 3178 |
| BssNAI | GTATAC | 1 cut(s) | 1360 |
| BssNI | GRCGYC | 3 cut(s) | 184, 1431, 3049 |
| BssSI | CACGAG | 4 cut(s) | 5, 795, 1565, 1845 |
| BssT1I | CCWWGG | 2 cut(s) | 1882, 3178 |
| Bst1107I | GTATAC | 1 cut(s) | 1360 |
| Bst2BI | CACGAG | 4 cut(s) | 5, 795, 1565, 1845 |
| Bst2UI | CCWGG | 4 cut(s) | 162, 2135, 2720, 2936 |
| Bst4CI | ACNGT | 9 cut(s) | 297, 1302, 1438, 1806, 1907, 2368, 2543, 2668, 2866 |
| BstACI | GRCGYC | 3 cut(s) | 184, 1431, 3049 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 205, 2084, 2197, 2981 |
| BstBAI | YACGTR | 1 cut(s) | 1739 |
| BstDSI | CCRYGG | 1 cut(s) | 3178 |
| BstEII | GGTNACC | 1 cut(s) | 1454 |
| BstMAI | GTCTC | 5 cut(s) | 245, 1038, 1481, 1803, 2074 |
| BstNI | CCWGG | 4 cut(s) | 162, 2135, 2720, 2936 |
| BstNSI | RCATGY | 4 cut(s) | 848, 881, 2057, 2535 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2733 |
| BstPI | GGTNACC | 1 cut(s) | 1454 |
| BstSCI | CCNGG | 5 cut(s) | 160, 482, 2133, 2718, 2934 |
| BstSLI | GKGCMC | 3 cut(s) | 785, 2259, 2644 |
| BstV1I | GCAGC | 5 cut(s) | 828, 969, 1026, 2647, 2955 |
| BstV2I | GAAGAC | 4 cut(s) | 88, 411, 1908, 2218 |
| BstX2I | RGATCY | 5 cut(s) | 1112, 2035, 2649, 2941, 3230 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 3179 |
| BstYI | RGATCY | 5 cut(s) | 1112, 2035, 2649, 2941, 3230 |
| BstZ17I | GTATAC | 1 cut(s) | 1360 |
| Bsu15I | ATCGAT | 2 cut(s) | 860, 2827 |
| BsuI | GTATCC | 1 cut(s) | 1251 |
| BsuRI | GGCC | 3 cut(s) | 1617, 1758, 1786 |
| BsuTUI | ATCGAT | 2 cut(s) | 860, 2827 |
| BtgI | CCRYGG | 1 cut(s) | 3178 |
| BtsI | GCAGTG | 1 cut(s) | 641 |
| BtsIMutI | CAGTG | 8 cut(s) | 641, 1463, 2259, 2392, 2557, 2567, 2848, 2862 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1465 |
| Cfr10I | RCCGGY | 3 cut(s) | 14, 85, 2104 |
| Cfr13I | GGNCC | 4 cut(s) | 868, 1616, 1756, 2130 |
| ClaI | ATCGAT | 2 cut(s) | 860, 2827 |
| CseI | GACGC | 4 cut(s) | 262, 1420, 2189, 3038 |
| Csp6I | GTAC | 6 cut(s) | 73, 715, 1551, 1887, 2404, 3056 |
| CviQI | GTAC | 6 cut(s) | 73, 715, 1551, 1887, 2404, 3056 |
| DraIII | CACNNNGTG | 2 cut(s) | 2843, 3041 |
| EciI | GGCGGA | 1 cut(s) | 104 |
| Ecl136II | GAGCTC | 1 cut(s) | 3062 |
| Eco130I | CCWWGG | 2 cut(s) | 1882, 3178 |
| Eco147I | AGGCCT | 1 cut(s) | 1786 |
| Eco24I | GRGCYC | 2 cut(s) | 1222, 3064 |
| Eco31I | GGTCTC | 1 cut(s) | 2074 |
| Eco32I | GATATC | 2 cut(s) | 1525, 3196 |
| Eco47I | GGWCC | 2 cut(s) | 868, 2130 |
| Eco53kI | GAGCTC | 1 cut(s) | 3062 |
| Eco57I | CTGAAG | 7 cut(s) | 165, 171, 572, 672, 822, 1410, 3011 |
| Eco91I | GGTNACC | 1 cut(s) | 1454 |
| EcoICRI | GAGCTC | 1 cut(s) | 3062 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1616, 1756, 2130 |
| EcoO65I | GGTNACC | 1 cut(s) | 1454 |
| EcoRII | CCWGG | 4 cut(s) | 160, 2133, 2718, 2934 |
| EcoRV | GATATC | 2 cut(s) | 1525, 3196 |
| EcoT14I | CCWWGG | 2 cut(s) | 1882, 3178 |
| EcoT38I | GRGCYC | 2 cut(s) | 1222, 3064 |
| ErhI | CCWWGG | 2 cut(s) | 1882, 3178 |
| Esp3I | CGTCTC | 1 cut(s) | 245 |
| FaqI | GGGAC | 5 cut(s) | 986, 1002, 1775, 2143, 2782 |
| FauNDI | CATATG | 2 cut(s) | 1978, 2230 |
| FbaI | TGATCA | 1 cut(s) | 2688 |
| FblI | GTMKAC | 1 cut(s) | 1359 |
| Fnu4HI | GCNGC | 9 cut(s) | 261, 311, 842, 958, 1040, 2661, 2870, 2969, 3164 |
| FriOI | GRGCYC | 2 cut(s) | 1222, 3064 |
| Fsp4HI | GCNGC | 9 cut(s) | 261, 311, 842, 958, 1040, 2661, 2870, 2969, 3164 |
| FspBI | CTAG | 9 cut(s) | 891, 981, 1065, 1410, 1533, 1668, 2745, 2891, 3250 |
| GluI | GCNGC | 9 cut(s) | 261, 311, 842, 958, 1040, 2661, 2870, 2969, 3164 |
| GsaI | CCCAGC | 2 cut(s) | 2004, 3048 |
| HaeIII | GGCC | 3 cut(s) | 1617, 1758, 1786 |
| HapII | CCGG | 9 cut(s) | 15, 23, 86, 175, 483, 1097, 1542, 2105, 2921 |
| HgaI | GACGC | 4 cut(s) | 262, 1420, 2189, 3038 |
| Hin1I | GRCGYC | 3 cut(s) | 184, 1431, 3049 |
| HincII | GTYRAC | 1 cut(s) | 3012 |
| HindII | GTYRAC | 1 cut(s) | 3012 |
| HindIII | AAGCTT | 4 cut(s) | 606, 644, 1187, 2385 |
| HpaII | CCGG | 9 cut(s) | 15, 23, 86, 175, 483, 1097, 1542, 2105, 2921 |
| HphI | GGTGA | 7 cut(s) | 1019, 1450, 1466, 1495, 2461, 3161, 3214 |
| Hpy166II | GTNNAC | 8 cut(s) | 167, 783, 868, 1360, 2406, 2642, 3012, 3028 |
| Hpy188I | TCNGA | 4 cut(s) | 189, 466, 591, 604 |
| Hpy8I | GTNNAC | 8 cut(s) | 167, 783, 868, 1360, 2406, 2642, 3012, 3028 |
| Hpy99I | CGWCG | 5 cut(s) | 104, 121, 186, 189, 2205 |
| HpyCH4III | ACNGT | 9 cut(s) | 297, 1302, 1438, 1806, 1907, 2368, 2543, 2668, 2866 |
| HpyCH4IV | ACGT | 5 cut(s) | 184, 1362, 1738, 1889, 2908 |
| HpySE526I | ACGT | 5 cut(s) | 184, 1362, 1738, 1889, 2908 |
| Hsp92I | GRCGYC | 3 cut(s) | 184, 1431, 3049 |
| KflI | GGGWCCC | 1 cut(s) | 2130 |
| Kpn2I | TCCGGA | 2 cut(s) | 1096, 1541 |
| KroI | GCCGGC | 1 cut(s) | 2104 |
| KroNI | GCCGGC | 1 cut(s) | 2106 |
| Ksp22I | TGATCA | 1 cut(s) | 2688 |
| LmnI | GCTCC | 5 cut(s) | 133, 196, 1372, 1444, 2156 |
| Lsp1109I | GCAGC | 5 cut(s) | 828, 969, 1026, 2647, 2955 |
| LweI | GCATC | 7 cut(s) | 130, 325, 565, 616, 828, 866, 2134 |
| MaeI | CTAG | 9 cut(s) | 891, 981, 1065, 1410, 1533, 1668, 2745, 2891, 3250 |
| MaeII | ACGT | 5 cut(s) | 184, 1362, 1738, 1889, 2908 |
| MaeIII | GTNAC | 9 cut(s) | 680, 1400, 1432, 1454, 1501, 1778, 2390, 2722, 2860 |
| MfeI | CAATTG | 1 cut(s) | 2339 |
| MflI | RGATCY | 5 cut(s) | 1112, 2035, 2649, 2941, 3230 |
| MhlI | GDGCHC | 5 cut(s) | 785, 1222, 2259, 2644, 3064 |
| MlyI | GAGTC | 4 cut(s) | 20, 1237, 1462, 3088 |
| MmeI | TCCRAC | 3 cut(s) | 167, 1792, 2379 |
| MroI | TCCGGA | 2 cut(s) | 1096, 1541 |
| MroNI | GCCGGC | 1 cut(s) | 2104 |
| MroXI | GAANNNNTTC | 6 cut(s) | 657, 773, 1140, 1923, 2355, 2910 |
| MseI | TTAA | 6 cut(s) | 192, 690, 744, 1311, 1335, 2853 |
| MspA1I | CMGCKG | 4 cut(s) | 960, 1039, 2026, 2989 |
| MspI | CCGG | 9 cut(s) | 15, 23, 86, 175, 483, 1097, 1542, 2105, 2921 |
| MspR9I | CCNGG | 5 cut(s) | 162, 484, 2135, 2720, 2936 |
| MunI | CAATTG | 1 cut(s) | 2339 |
| Mva1269I | GAATGC | 2 cut(s) | 1229, 2350 |
| MvaI | CCWGG | 4 cut(s) | 162, 2135, 2720, 2936 |
| NaeI | GCCGGC | 1 cut(s) | 2106 |
| NciI | CCSGG | 1 cut(s) | 484 |
| NcoI | CCATGG | 1 cut(s) | 3178 |
| NdeI | CATATG | 2 cut(s) | 1978, 2230 |
| NgoMIV | GCCGGC | 1 cut(s) | 2104 |
| NheI | GCTAGC | 1 cut(s) | 2744 |
| NlaIV | GGNNCC | 5 cut(s) | 1077, 2131, 2132, 2651, 3232 |
| NmeAIII | GCCGAG | 2 cut(s) | 181, 339 |
| NmuCI | GTSAC | 6 cut(s) | 1432, 1454, 1501, 2390, 2722, 2860 |
| NspI | RCATGY | 4 cut(s) | 848, 881, 2057, 2535 |
| PaeI | GCATGC | 1 cut(s) | 881 |
| PceI | AGGCCT | 1 cut(s) | 1786 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 178, 260, 1852 |
| PctI | GAATGC | 2 cut(s) | 1229, 2350 |
| PdiI | GCCGGC | 1 cut(s) | 2106 |
| PdmI | GAANNNNTTC | 6 cut(s) | 657, 773, 1140, 1923, 2355, 2910 |
| PfeI | GAWTC | 7 cut(s) | 286, 461, 825, 1815, 2098, 2225, 2434 |
| PkrI | GCNGC | 9 cut(s) | 262, 312, 843, 959, 1041, 2662, 2871, 2970, 3165 |
| PleI | GAGTC | 4 cut(s) | 20, 1237, 1462, 3088 |
| PpsI | GAGTC | 4 cut(s) | 20, 1237, 1462, 3088 |
| Ppu21I | YACGTR | 1 cut(s) | 1739 |
| PpuMI | RGGWCCY | 1 cut(s) | 2130 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2733 |
| PshBI | ATTAAT | 1 cut(s) | 690 |
| PsiI | TTATAA | 2 cut(s) | 726, 1350 |
| Psp124BI | GAGCTC | 1 cut(s) | 3064 |
| Psp5II | RGGWCCY | 1 cut(s) | 2130 |
| Psp6I | CCWGG | 4 cut(s) | 160, 2133, 2718, 2934 |
| PspEI | GGTNACC | 1 cut(s) | 1454 |
| PspFI | CCCAGC | 2 cut(s) | 2000, 3044 |
| PspGI | CCWGG | 4 cut(s) | 160, 2133, 2718, 2934 |
| PspN4I | GGNNCC | 5 cut(s) | 1077, 2131, 2132, 2651, 3232 |
| PspPI | GGNCC | 4 cut(s) | 868, 1616, 1756, 2130 |
| PspPPI | RGGWCCY | 1 cut(s) | 2130 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1465 |
| PsuI | RGATCY | 5 cut(s) | 1112, 2035, 2649, 2941, 3230 |
| PvuII | CAGCTG | 3 cut(s) | 1039, 2026, 2989 |
| RsaI | GTAC | 6 cut(s) | 74, 716, 1552, 1888, 2405, 3057 |
| RsaNI | GTAC | 6 cut(s) | 73, 715, 1551, 1887, 2404, 3056 |
| SacI | GAGCTC | 1 cut(s) | 3064 |
| SaqAI | TTAA | 6 cut(s) | 192, 690, 744, 1311, 1335, 2853 |
| SatI | GCNGC | 9 cut(s) | 261, 311, 842, 958, 1040, 2661, 2870, 2969, 3164 |
| Sau96I | GGNCC | 4 cut(s) | 868, 1616, 1756, 2130 |
| SchI | GAGTC | 4 cut(s) | 20, 1237, 1462, 3088 |
| ScrFI | CCNGG | 5 cut(s) | 162, 484, 2135, 2720, 2936 |
| SduI | GDGCHC | 5 cut(s) | 785, 1222, 2259, 2644, 3064 |
| SfaNI | GCATC | 7 cut(s) | 130, 325, 565, 616, 828, 866, 2134 |
| SinI | GGWCC | 2 cut(s) | 868, 2130 |
| SmlI | CTYRAG | 1 cut(s) | 675 |
| SmoI | CTYRAG | 1 cut(s) | 675 |
| SpeI | ACTAGT | 1 cut(s) | 2890 |
| SphI | GCATGC | 1 cut(s) | 881 |
| SseBI | AGGCCT | 1 cut(s) | 1786 |
| SsiI | CCGC | 7 cut(s) | 89, 260, 311, 960, 2020, 2869, 3164 |
| SspMI | CTAG | 9 cut(s) | 891, 981, 1065, 1410, 1533, 1668, 2745, 2891, 3250 |
| SstI | GAGCTC | 1 cut(s) | 3064 |
| StuI | AGGCCT | 1 cut(s) | 1786 |
| StyD4I | CCNGG | 5 cut(s) | 160, 482, 2133, 2718, 2934 |
| StyI | CCWWGG | 2 cut(s) | 1882, 3178 |
| TaaI | ACNGT | 9 cut(s) | 297, 1302, 1438, 1806, 1907, 2368, 2543, 2668, 2866 |
| TaiI | ACGT | 5 cut(s) | 187, 1365, 1741, 1892, 2911 |
| TatI | WGTACW | 1 cut(s) | 2403 |
| TauI | GCSGC | 4 cut(s) | 263, 313, 2872, 3166 |
| TfiI | GAWTC | 7 cut(s) | 286, 461, 825, 1815, 2098, 2225, 2434 |
| Tru1I | TTAA | 6 cut(s) | 192, 690, 744, 1311, 1335, 2853 |
| Tru9I | TTAA | 6 cut(s) | 192, 690, 744, 1311, 1335, 2853 |
| TscAI | CASTG | 8 cut(s) | 641, 1470, 2266, 2399, 2564, 2574, 2848, 2869 |
| TseFI | GTSAC | 6 cut(s) | 1432, 1454, 1501, 2390, 2722, 2860 |
| TseI | GCWGC | 5 cut(s) | 841, 957, 1039, 2660, 2968 |
| Tsp45I | GTSAC | 6 cut(s) | 1432, 1454, 1501, 2390, 2722, 2860 |
| TspRI | CASTG | 8 cut(s) | 641, 1470, 2266, 2399, 2564, 2574, 2848, 2869 |
| VneI | GTGCAC | 2 cut(s) | 781, 2640 |
| VpaK11BI | GGWCC | 2 cut(s) | 868, 2130 |
| VspI | ATTAAT | 1 cut(s) | 690 |
| XapI | RAATTY | 3 cut(s) | 730, 1590, 1920 |
| XceI | RCATGY | 4 cut(s) | 848, 881, 2057, 2535 |
| XmiI | GTMKAC | 1 cut(s) | 1359 |
| XmnI | GAANNNNTTC | 6 cut(s) | 657, 773, 1140, 1923, 2355, 2910 |
| XspI | CTAG | 9 cut(s) | 891, 981, 1065, 1410, 1533, 1668, 2745, 2891, 3250 |
| ZraI | GACGTC | 1 cut(s) | 185 |