Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0000802

Physical Location & Seq

Genomic Coordinates Reverse (-)

4265472 .. 4265962

Gene Structure 491 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1062900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGAAGACGATGAGAGACGCAAGCTACTCGAGATGTCAGATGCACAGTTGCTTGATGTTCAACGGTTTTGCAACCGGTTTCCTGACACTGATGTGAATTATGAGGTCCTGGGTTGCGAAAGTATTAACGCTGGGGAAGATAAGATCACACTGCAAGTCAGTCTTAATCGCGATCTTGATGGGCGGACTGAGGTAGGTCCTGTTGATGCTCCGAGATATCCCAAGGGGAAAGAAGAAGGGTGGTGGCTTGTAGTTGGAGATACCAAGACTGACTCCTTGCTTGACATCAAGAAAGTTTCCGTGCAAAAGAAGTCAAAGATAAAGCTCGAATTCGCTGCTTCTGCAGCCGAAACTGCCGGAAAGAAGACGTACACCCTATATTTCATGTGTGATTCATACATGGGATGTGATCAGGAAATCAGTGTTGATATTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000354 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005911 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009506 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0022613 GO:0022618 GO:0030054 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0042623 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0046540 GO:0055044 GO:0065003 GO:0070013 GO:0070035 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097525 GO:0097526 GO:0120114 GO:0140098 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD Helicase_C Sec63

Protein Analysis

146

Amino Acids

16.4

Weight (kDa)

4.64

Isoelectric Point (pI)

28.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec63	PF02889	20 - 142	6.3e-20	Sec63 Brl domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20960 AT1G20960 AT2G42270
fragaria_vesca	FvH4_5g21940 FvH4_5g30070 FvH4_6g00860 FvH4_6g00860 FvH4_6g47200
malus_domestica	MD04G1240400.v1.1 MD09G1062900.v1.1 MD09G1063000.v1.1 MD12G1257300.v1.1
prunus_persica	Prupe.6G358100_v2.0.a1 Prupe.6G358100_v2.0.a1
pyrus_communis	pycom04g21210 pycom04g21230 pycom111g05330 pycom12g23600 pycom12g23620
rosa_chinensis	RchiOBHm_Chr2g0166221 RchiOBHm_Chr3g0448041 RchiOBHm_Chr3g0448351 RchiOBHm_Chr5g0014801 RchiOBHm_Chr7g0209461
rosa_laevigata	RLG00000003133 RLG00000021598 RLG00000021599 RLG00000025925 RLG00000025950 RLG00000025953 RLG00000032142
rosa_multiflora	Rmu_co8520521.1_g000001 Rmu_sc0005582.1_g000009 Rmu_sc0005969.1_g000018 Rmu_sc0015167.1_g000007 Rmu_ssc0000323.1_g000031
rosa_roxburghii	Rroxscaffold_1G00061750 Rroxscaffold_2G00085080 Rroxscaffold_3G00249430 Rroxscaffold_6G00426200 Rroxscaffold_6G00426480 Rroxscaffold_6G00426530
rosa_rugosa	Rorug02G0521300 Rorug02G0607900 Rorug02G0611500 Rorug02G0611600 Rorug07G0113200
rosa_samantha	Rh2AG587300 Rh2BG599200 Rh2CG569600 Rh2DG608900 Rh3AG010500 Rh3AG010600 Rh3BG010200 Rh3BG010300 Rh3CG009900 Rh3CG010000 Rh3DG010600 Rh3DG010700 Rh5CG124900 Rh7AG247100 Rh7BG242100 Rh7CG262700 Rh7DG253400
rosa_wichuraiana	Rw0G020040 Rw2G048960 Rw3G000580 Rw3G000830 Rw7G020900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	171
AciI	CCGC	1 cut(s)	184
AcsI	RAATTY	1 cut(s)	329
AfaI	GTAC	1 cut(s)	371
AgeI	ACCGGT	1 cut(s)	75
AgsI	TTSAA	1 cut(s)	62
AjnI	CCWGG	1 cut(s)	108
AleI	CACNNNNGTG	1 cut(s)	92
AluBI	AGCT	2 cut(s)	25, 325
AluI	AGCT	2 cut(s)	25, 325
Alw26I	GTCTC	1 cut(s)	10
Ama87I	CYCGRG	1 cut(s)	29
ApeKI	GCWGC	2 cut(s)	335, 344
ApoI	RAATTY	1 cut(s)	329
AseI	ATTAAT	1 cut(s)	432
AsiGI	ACCGGT	1 cut(s)	75
AspS9I	GGNCC	2 cut(s)	106, 197
AvaI	CYCGRG	1 cut(s)	29
AvaII	GGWCC	2 cut(s)	106, 197
BbsI	GAAGAC	2 cut(s)	12, 371
BbvI	GCAGC	2 cut(s)	322, 356
BccI	CCATC	1 cut(s)	173
BcgI	CGANNNNNNTGC	4 cut(s)	10, 44, 317, 351
BciT130I	CCWGG	1 cut(s)	110
BclI	TGATCA	1 cut(s)	409
BcoDI	GTCTC	1 cut(s)	10
BfmI	CTRYAG	1 cut(s)	342
BisI	GCNGC	2 cut(s)	336, 345
BlsI	GCNGC	2 cut(s)	337, 346
Bme1390I	CCNGG	1 cut(s)	110
Bme18I	GGWCC	2 cut(s)	106, 197
BmeT110I	CYCGRG	1 cut(s)	29
BmgT120I	GGNCC	2 cut(s)	106, 197
BmrFI	CCNGG	1 cut(s)	110
BmsI	GCATC	2 cut(s)	31, 196
BpiI	GAAGAC	2 cut(s)	12, 371
BsaJI	CCNNGG	2 cut(s)	109, 222
BsaWI	WCCGGW	1 cut(s)	75
Bse118I	RCCGGY	1 cut(s)	75
BseBI	CCWGG	1 cut(s)	110
BseDI	CCNNGG	2 cut(s)	109, 222
BseGI	GGATG	1 cut(s)	410
BseMII	CTCAG	1 cut(s)	180
BseXI	GCAGC	2 cut(s)	322, 356
BseYI	CCCAGC	1 cut(s)	131
Bsh1236I	CGCG	1 cut(s)	171
BshTI	ACCGGT	1 cut(s)	75
BsiHKCI	CYCGRG	1 cut(s)	29
BsiSI	CCGG	2 cut(s)	76, 357
BsmAI	GTCTC	1 cut(s)	10
BsmBI	CGTCTC	1 cut(s)	10
BsoBI	CYCGRG	1 cut(s)	29
Bsp143I	GATC	3 cut(s)	144, 172, 409
Bsp68I	TCGCGA	1 cut(s)	171
BspACI	CCGC	1 cut(s)	184
BspCNI	CTCAG	1 cut(s)	181
BspFNI	CGCG	1 cut(s)	171
BspMAI	CTGCAG	1 cut(s)	346
BsrFI	RCCGGY	1 cut(s)	75
BssAI	RCCGGY	1 cut(s)	75
BssECI	CCNNGG	2 cut(s)	109, 222
BssMI	GATC	3 cut(s)	144, 172, 409
BssT1I	CCWWGG	1 cut(s)	222
Bst2UI	CCWGG	1 cut(s)	110
Bst4CI	ACNGT	2 cut(s)	48, 66
BstC8I	GCNNGC	1 cut(s)	23
BstDEI	CTNAG	1 cut(s)	189
BstF5I	GGATG	1 cut(s)	410
BstFNI	CGCG	1 cut(s)	171
BstKTI	GATC	3 cut(s)	147, 175, 412
BstMAI	GTCTC	1 cut(s)	10
BstMBI	GATC	3 cut(s)	144, 172, 409
BstMWI	GCNNNNNNNGC	3 cut(s)	341, 344, 353
BstNI	CCWGG	1 cut(s)	110
BstSCI	CCNGG	1 cut(s)	108
BstSFI	CTRYAG	1 cut(s)	342
BstUI	CGCG	1 cut(s)	171
BstV1I	GCAGC	2 cut(s)	322, 356
BstV2I	GAAGAC	2 cut(s)	12, 371
BtsCI	GGATG	1 cut(s)	410
BtsI	GCAGTG	1 cut(s)	149
BtsIMutI	CAGTG	3 cut(s)	87, 149, 427
BtuMI	TCGCGA	1 cut(s)	171
Cac8I	GCNNGC	1 cut(s)	23
Cfr10I	RCCGGY	1 cut(s)	75
Cfr13I	GGNCC	2 cut(s)	106, 197
CseI	GACGC	1 cut(s)	27
Csp6I	GTAC	1 cut(s)	370
CspAI	ACCGGT	1 cut(s)	75
CviAII	CATG	2 cut(s)	385, 400
CviJI	RGCY	4 cut(s)	25, 247, 325, 347
CviKI_1	RGCY	4 cut(s)	25, 247, 325, 347
CviQI	GTAC	1 cut(s)	370
DdeI	CTNAG	1 cut(s)	189
DpnI	GATC	3 cut(s)	146, 174, 411
DpnII	GATC	3 cut(s)	144, 172, 409
EciI	GGCGGA	1 cut(s)	199
Eco130I	CCWWGG	1 cut(s)	222
Eco32I	GATATC	1 cut(s)	218
Eco47I	GGWCC	2 cut(s)	106, 197
Eco88I	CYCGRG	1 cut(s)	29
EcoO109I	RGGNCCY	2 cut(s)	106, 197
EcoRI	GAATTC	1 cut(s)	329
EcoRII	CCWGG	1 cut(s)	108
EcoRV	GATATC	1 cut(s)	218
EcoT14I	CCWWGG	1 cut(s)	222
ErhI	CCWWGG	1 cut(s)	222
Esp3I	CGTCTC	1 cut(s)	10
FaeI	CATG	2 cut(s)	388, 403
FaiI	YATR	5 cut(s)	102, 379, 386, 397, 401
FalI	AAGNNNNNCTT	2 cut(s)	147, 179
FatI	CATG	2 cut(s)	384, 399
FbaI	TGATCA	1 cut(s)	409
Fnu4HI	GCNGC	2 cut(s)	336, 345
FokI	GGATG	1 cut(s)	417
Fsp4HI	GCNGC	2 cut(s)	336, 345
GluI	GCNGC	2 cut(s)	336, 345
GsaI	CCCAGC	1 cut(s)	135
HapII	CCGG	2 cut(s)	76, 357
HgaI	GACGC	1 cut(s)	27
Hin1II	CATG	2 cut(s)	388, 403
HinfI	GANTC	2 cut(s)	272, 392
HpaII	CCGG	2 cut(s)	76, 357
Hpy166II	GTNNAC	1 cut(s)	372
Hpy188I	TCNGA	2 cut(s)	40, 213
Hpy188III	TCNNGA	6 cut(s)	31, 83, 170, 176, 289, 413
Hpy8I	GTNNAC	1 cut(s)	372
HpyAV	CCTTC	1 cut(s)	230
HpyCH4III	ACNGT	2 cut(s)	48, 66
HpyCH4IV	ACGT	1 cut(s)	368
HpyCH4V	TGCA	5 cut(s)	44, 72, 154, 304, 344
HpyF10VI	GCNNNNNNNGC	3 cut(s)	341, 344, 353
HpyF3I	CTNAG	1 cut(s)	189
HpySE526I	ACGT	1 cut(s)	368
Hsp92II	CATG	2 cut(s)	388, 403
Ksp22I	TGATCA	1 cut(s)	409
Kzo9I	GATC	3 cut(s)	144, 172, 409
LmnI	GCTCC	1 cut(s)	214
LpnPI	CCDG	8 cut(s)	89, 95, 96, 117, 122, 213, 370, 398
Lsp1109I	GCAGC	2 cut(s)	322, 356
LweI	GCATC	2 cut(s)	31, 196
MaeII	ACGT	1 cut(s)	368
MalI	GATC	3 cut(s)	146, 174, 411
MboI	GATC	3 cut(s)	144, 172, 409
MboII	GAAGA	4 cut(s)	17, 149, 245, 376
MluCI	AATT	3 cut(s)	97, 329, 433
MlyI	GAGTC	1 cut(s)	266
MmeI	TCCRAC	1 cut(s)	235
MnlI	CCTC	2 cut(s)	97, 184
MseI	TTAA	3 cut(s)	126, 165, 432
MslI	CAYNNNNRTG	1 cut(s)	92
MspI	CCGG	2 cut(s)	76, 357
MspR9I	CCNGG	1 cut(s)	110
MvaI	CCWGG	1 cut(s)	110
MvnI	CGCG	1 cut(s)	171
MwoI	GCNNNNNNNGC	3 cut(s)	341, 344, 353
NdeII	GATC	3 cut(s)	144, 172, 409
NlaIII	CATG	2 cut(s)	388, 403
NruI	TCGCGA	1 cut(s)	171
OliI	CACNNNNGTG	1 cut(s)	92
PaeR7I	CTCGAG	1 cut(s)	29
PfeI	GAWTC	1 cut(s)	392
PinAI	ACCGGT	1 cut(s)	75
PkrI	GCNGC	2 cut(s)	337, 346
PleI	GAGTC	1 cut(s)	266
PpsI	GAGTC	1 cut(s)	266
PpuMI	RGGWCCY	2 cut(s)	106, 197
PshBI	ATTAAT	1 cut(s)	432
Psp5II	RGGWCCY	2 cut(s)	106, 197
Psp6I	CCWGG	1 cut(s)	108
PspFI	CCCAGC	1 cut(s)	131
PspGI	CCWGG	1 cut(s)	108
PspPI	GGNCC	2 cut(s)	106, 197
PspPPI	RGGWCCY	2 cut(s)	106, 197
PstI	CTGCAG	1 cut(s)	346
RruI	TCGCGA	1 cut(s)	171
RsaI	GTAC	1 cut(s)	371
RsaNI	GTAC	1 cut(s)	370
RseI	CAYNNNNRTG	1 cut(s)	92
SaqAI	TTAA	3 cut(s)	126, 165, 432
SatI	GCNGC	2 cut(s)	336, 345
Sau3AI	GATC	3 cut(s)	144, 172, 409
Sau96I	GGNCC	2 cut(s)	106, 197
SchI	GAGTC	1 cut(s)	266
ScrFI	CCNGG	1 cut(s)	110
SetI	ASST	6 cut(s)	27, 108, 195, 199, 327, 371
SfaNI	GCATC	2 cut(s)	31, 196
SfcI	CTRYAG	1 cut(s)	342
Sfr274I	CTCGAG	1 cut(s)	29
SinI	GGWCC	2 cut(s)	106, 197
SlaI	CTCGAG	1 cut(s)	29
SmiMI	CAYNNNNRTG	1 cut(s)	92
SmlI	CTYRAG	1 cut(s)	29
SmoI	CTYRAG	1 cut(s)	29
Sse9I	AATT	3 cut(s)	97, 329, 433
SsiI	CCGC	1 cut(s)	184
StyD4I	CCNGG	1 cut(s)	108
StyI	CCWWGG	1 cut(s)	222
TaaI	ACNGT	2 cut(s)	48, 66
TaiI	ACGT	1 cut(s)	371
TaqI	TCGA	2 cut(s)	30, 327
TasI	AATT	3 cut(s)	97, 329, 433
TfiI	GAWTC	1 cut(s)	392
Tru1I	TTAA	3 cut(s)	126, 165, 432
Tru9I	TTAA	3 cut(s)	126, 165, 432
TscAI	CASTG	3 cut(s)	94, 156, 427
TseI	GCWGC	2 cut(s)	335, 344
TspDTI	ATGAA	2 cut(s)	373, 384
TspGWI	ACGGA	1 cut(s)	289
TspRI	CASTG	3 cut(s)	94, 156, 427
VpaK11BI	GGWCC	2 cut(s)	106, 197
VspI	ATTAAT	1 cut(s)	432
XapI	RAATTY	1 cut(s)	329
XhoI	CTCGAG	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.