Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000802

Physical Location & Seq

Genomic Coordinates Reverse (-)

20990051 .. 20993383

Gene Structure 3333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g30070.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGCGGTGCACCACCTTAAGCTTTCCGGTCATCATATAGGAAGAGCAAGGAGAAGAATGGTGGGTCGTGCTCGTTGTCCTGAAGAGGATGGTTCTGCAAAATGTATCATCTTTTGCCATACGGCTAGTCAACCATACTATGGGGATGTTCTTAAGAAGGGAGAGCCATTGTCTGTTGAAAGCCATTTACCTCTTAACCTACATGATATTCTAAATGCAGAAGTTGTTGCTGGAACCATTACTGACAAGAAGGGGGCTTTAGATTTCCTTGCAACCACTTATTTTCATCATAGGGCCGATGCCACACCACTTTTGTCTTTGAATCTTGGTGAGATAGCTTCAAACAACTGCATCAATTATAGTACCATAGAGGAGGTAATGGTTGATGTCATTGTTGTCTGTTTCAGAAATAGAGGTCTACACCTTGCTCTTCTCGCTATGAAAGTTAACCAGATGTTGACTCAAGGAGTGTGGCATGATATGGGCCCTGTTGATGCTCCGAGGTACCCTTATGCTAAAGATGAGAAGTGGTGGCTTGTTGGCGATCCAGAGATCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000354 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005911 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009506 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0022613 GO:0022618 GO:0030054 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0042623 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0046540 GO:0055044 GO:0065003 GO:0070013 GO:0070035 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097525 GO:0097526 GO:0120114 GO:0140098 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD Helicase_C Sec63

Protein Analysis

187

Amino Acids

20.78

Weight (kDa)

6.58

Isoelectric Point (pI)

34.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_SNRNP200	PF23445	60 - 105	9.5e-10	Winged Helix-turn-helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20960 AT1G20960 AT2G42270
fragaria_vesca	FvH4_5g21940 FvH4_5g30070 FvH4_6g00860 FvH4_6g00860 FvH4_6g47200
malus_domestica	MD04G1240400.v1.1 MD09G1062900.v1.1 MD09G1063000.v1.1 MD12G1257300.v1.1
prunus_persica	Prupe.6G358100_v2.0.a1 Prupe.6G358100_v2.0.a1
pyrus_communis	pycom04g21210 pycom04g21230 pycom111g05330 pycom12g23600 pycom12g23620
rosa_chinensis	RchiOBHm_Chr2g0166221 RchiOBHm_Chr3g0448041 RchiOBHm_Chr3g0448351 RchiOBHm_Chr5g0014801 RchiOBHm_Chr7g0209461
rosa_laevigata	RLG00000003133 RLG00000021598 RLG00000021599 RLG00000025925 RLG00000025950 RLG00000025953 RLG00000032142
rosa_multiflora	Rmu_co8520521.1_g000001 Rmu_sc0005582.1_g000009 Rmu_sc0005969.1_g000018 Rmu_sc0015167.1_g000007 Rmu_ssc0000323.1_g000031
rosa_roxburghii	Rroxscaffold_1G00061750 Rroxscaffold_2G00085080 Rroxscaffold_3G00249430 Rroxscaffold_6G00426200 Rroxscaffold_6G00426480 Rroxscaffold_6G00426530
rosa_rugosa	Rorug02G0521300 Rorug02G0607900 Rorug02G0611500 Rorug02G0611600 Rorug07G0113200
rosa_samantha	Rh2AG587300 Rh2BG599200 Rh2CG569600 Rh2DG608900 Rh3AG010500 Rh3AG010600 Rh3BG010200 Rh3BG010300 Rh3CG009900 Rh3CG010000 Rh3DG010600 Rh3DG010700 Rh5CG124900 Rh7AG247100 Rh7BG242100 Rh7CG262700 Rh7DG253400
rosa_wichuraiana	Rw0G020040 Rw2G048960 Rw3G000580 Rw3G000830 Rw7G020900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	504
AccB1I	GGYRCC	1 cut(s)	504
AccB7I	CCANNNNNTGG	1 cut(s)	140
AccI	GTMKAC	1 cut(s)	418
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	1 cut(s)	539
AcuI	CTGAAG	1 cut(s)	102
AfaI	GTAC	2 cut(s)	364, 506
AfiI	CCNNNNNNNGG	1 cut(s)	140
AflII	CTTAAG	2 cut(s)	17, 152
AgsI	TTSAA	3 cut(s)	179, 322, 342
AluBI	AGCT	2 cut(s)	22, 338
AluI	AGCT	2 cut(s)	22, 338
Alw21I	GWGCWC	2 cut(s)	12, 73
Alw44I	GTGCAC	1 cut(s)	8
AlwI	GGATC	1 cut(s)	539
AoxI	GGCC	2 cut(s)	294, 484
ApaI	GGGCCC	1 cut(s)	488
ApaLI	GTGCAC	1 cut(s)	8
Asp718I	GGTACC	1 cut(s)	504
AspS9I	GGNCC	3 cut(s)	294, 484, 485
AsuHPI	GGTGA	1 cut(s)	341
BaeGI	GKGCMC	2 cut(s)	12, 488
BanI	GGYRCC	1 cut(s)	504
BanII	GRGCYC	1 cut(s)	488
Bbv12I	GWGCWC	2 cut(s)	12, 73
BccI	CCATC	1 cut(s)	83
BceAI	ACGGC	1 cut(s)	138
BfaI	CTAG	1 cut(s)	126
BfrI	CTTAAG	2 cut(s)	17, 152
BmgT120I	GGNCC	3 cut(s)	294, 484, 485
BmiI	GGNNCC	3 cut(s)	235, 486, 506
BmsI	GCATC	3 cut(s)	289, 360, 484
BpuEI	CTTGAG	1 cut(s)	447
BsaJI	CCNNGG	1 cut(s)	500
BsaWI	WCCGGW	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	1 cut(s)	140
BseDI	CCNNGG	1 cut(s)	500
BseGI	GGATG	2 cut(s)	94, 151
BseLI	CCNNNNNNNGG	1 cut(s)	140
BseRI	GAGGAG	1 cut(s)	386
BseSI	GKGCMC	2 cut(s)	12, 488
BshFI	GGCC	2 cut(s)	296, 486
BshNI	GGYRCC	1 cut(s)	504
BsiHKAI	GWGCWC	2 cut(s)	12, 73
BsiSI	CCGG	1 cut(s)	27
BslI	CCNNNNNNNGG	1 cut(s)	140
BsnI	GGCC	2 cut(s)	296, 486
Bsp120I	GGGCCC	1 cut(s)	484
Bsp1286I	GDGCHC	3 cut(s)	12, 73, 488
Bsp143I	GATC	2 cut(s)	544, 552
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	2 cut(s)	296, 486
BspLI	GGNNCC	3 cut(s)	235, 486, 506
BspPI	GGATC	1 cut(s)	539
BspQI	GCTCTTC	2 cut(s)	37, 435
BspT107I	GGYRCC	1 cut(s)	504
BspTI	CTTAAG	2 cut(s)	17, 152
BssECI	CCNNGG	1 cut(s)	500
BssMI	GATC	2 cut(s)	544, 552
Bst6I	CTCTTC	3 cut(s)	37, 78, 435
BstAFI	CTTAAG	2 cut(s)	17, 152
BstF5I	GGATG	2 cut(s)	94, 151
BstKTI	GATC	2 cut(s)	547, 555
BstMBI	GATC	2 cut(s)	544, 552
BstMWI	GCNNNNNNNGC	1 cut(s)	434
BstSLI	GKGCMC	2 cut(s)	12, 488
BsuRI	GGCC	2 cut(s)	296, 486
BtsCI	GGATG	2 cut(s)	94, 151
Cfr13I	GGNCC	3 cut(s)	294, 484, 485
Csp6I	GTAC	2 cut(s)	363, 505
CspCI	CAANNNNNGTGG	2 cut(s)	452, 487
CviAII	CATG	2 cut(s)	203, 476
CviJI	RGCY	9 cut(s)	22, 125, 166, 183, 257, 296, 338, 486, 535
CviKI_1	RGCY	9 cut(s)	22, 125, 166, 183, 257, 296, 338, 486, 535
CviQI	GTAC	2 cut(s)	363, 505
DpnI	GATC	2 cut(s)	546, 554
DpnII	GATC	2 cut(s)	544, 552
Eam1104I	CTCTTC	3 cut(s)	37, 78, 435
EarI	CTCTTC	3 cut(s)	37, 78, 435
Eco24I	GRGCYC	1 cut(s)	488
Eco57I	CTGAAG	1 cut(s)	102
EcoO109I	RGGNCCY	1 cut(s)	485
EcoT38I	GRGCYC	1 cut(s)	488
FaeI	CATG	2 cut(s)	206, 479
FatI	CATG	2 cut(s)	202, 475
FblI	GTMKAC	1 cut(s)	418
FokI	GGATG	2 cut(s)	101, 158
FriOI	GRGCYC	1 cut(s)	488
FspBI	CTAG	1 cut(s)	126
HaeIII	GGCC	2 cut(s)	296, 486
HapII	CCGG	1 cut(s)	27
Hin1II	CATG	2 cut(s)	206, 479
HincII	GTYRAC	3 cut(s)	131, 448, 459
HindII	GTYRAC	3 cut(s)	131, 448, 459
HindIII	AAGCTT	1 cut(s)	20
HinfI	GANTC	2 cut(s)	322, 460
HpaI	GTTAAC	1 cut(s)	448
HpaII	CCGG	1 cut(s)	27
HphI	GGTGA	1 cut(s)	341
Hpy166II	GTNNAC	5 cut(s)	10, 131, 419, 448, 459
Hpy188I	TCNGA	2 cut(s)	407, 501
Hpy188III	TCNNGA	2 cut(s)	80, 548
Hpy8I	GTNNAC	5 cut(s)	10, 131, 419, 448, 459
HpyAV	CCTTC	2 cut(s)	151, 244
HpyCH4V	TGCA	5 cut(s)	10, 98, 218, 272, 351
HpyF10VI	GCNNNNNNNGC	1 cut(s)	434
Hsp92II	CATG	2 cut(s)	206, 479
KpnI	GGTACC	1 cut(s)	508
KspAI	GTTAAC	1 cut(s)	448
Kzo9I	GATC	2 cut(s)	544, 552
LguI	GCTCTTC	2 cut(s)	37, 435
LmnI	GCTCC	1 cut(s)	502
LpnPI	CCDG	5 cut(s)	40, 93, 216, 464, 501
LweI	GCATC	3 cut(s)	289, 360, 484
MaeI	CTAG	1 cut(s)	126
MalI	GATC	2 cut(s)	546, 554
MboI	GATC	2 cut(s)	544, 552
MboII	GAAGA	4 cut(s)	54, 66, 95, 422
MhlI	GDGCHC	3 cut(s)	12, 73, 488
MluCI	AATT	1 cut(s)	355
MlyI	GAGTC	1 cut(s)	454
MnlI	CCTC	6 cut(s)	79, 201, 364, 367, 407, 495
MseI	TTAA	4 cut(s)	18, 153, 195, 447
MspCI	CTTAAG	2 cut(s)	17, 152
MspI	CCGG	1 cut(s)	27
MwoI	GCNNNNNNNGC	1 cut(s)	434
NdeII	GATC	2 cut(s)	544, 552
NlaIII	CATG	2 cut(s)	206, 479
NlaIV	GGNNCC	3 cut(s)	235, 486, 506
PciSI	GCTCTTC	2 cut(s)	37, 435
PfeI	GAWTC	1 cut(s)	322
PflMI	CCANNNNNTGG	1 cut(s)	140
PleI	GAGTC	1 cut(s)	454
PpsI	GAGTC	1 cut(s)	454
PspN4I	GGNNCC	3 cut(s)	235, 486, 506
PspOMI	GGGCCC	1 cut(s)	484
PspPI	GGNCC	3 cut(s)	294, 484, 485
RsaI	GTAC	2 cut(s)	364, 506
RsaNI	GTAC	2 cut(s)	363, 505
SapI	GCTCTTC	2 cut(s)	37, 435
SaqAI	TTAA	4 cut(s)	18, 153, 195, 447
Sau3AI	GATC	2 cut(s)	544, 552
Sau96I	GGNCC	3 cut(s)	294, 484, 485
SchI	GAGTC	1 cut(s)	454
SduI	GDGCHC	3 cut(s)	12, 73, 488
SetI	ASST	9 cut(s)	18, 24, 193, 201, 340, 378, 418, 426, 506
SfaNI	GCATC	3 cut(s)	289, 360, 484
SmlI	CTYRAG	3 cut(s)	17, 152, 462
SmoI	CTYRAG	3 cut(s)	17, 152, 462
Sse9I	AATT	1 cut(s)	355
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	1 cut(s)	126
TasI	AATT	1 cut(s)	355
TfiI	GAWTC	1 cut(s)	322
Tru1I	TTAA	4 cut(s)	18, 153, 195, 447
Tru9I	TTAA	4 cut(s)	18, 153, 195, 447
TspDTI	ATGAA	2 cut(s)	275, 455
Van91I	CCANNNNNTGG	1 cut(s)	140
Vha464I	CTTAAG	2 cut(s)	17, 152
VneI	GTGCAC	1 cut(s)	8
XmiI	GTMKAC	1 cut(s)	418
XspI	CTAG	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.