U5 small nuclear ribonucleoprotein 200 kDa
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Sec63 | PF02889 | 52 - 306 | 5.3e-71 | Sec63 Brl domain |
| ResIII | PF04851 | 349 - 494 | 1.4e-07 | Type III restriction enzyme, res subunit |
| DEAD | PF00270 | 352 - 525 | 4.9e-24 | DEAD/DEAH box helicase |
| WHD_SNRNP200 | PF23445 | 743 - 824 | 1.1e-33 | Winged Helix-turn-helix domain |
| Sec63 | PF02889 | 830 - 1149 | 2.3e-57 | Sec63 Brl domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 3311, 3396 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 3302 |
| AccB1I | GGYRCC | 2 cut(s) | 330, 832 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 2050, 2856 |
| AccI | GTMKAC | 2 cut(s) | 1519, 2531 |
| AccII | CGCG | 3 cut(s) | 192, 1117, 2177 |
| AciI | CCGC | 7 cut(s) | 190, 1470, 2135, 2451, 2771, 3350, 3387 |
| AclI | AACGTT | 1 cut(s) | 1293 |
| AclWI | GGATC | 4 cut(s) | 79, 1959, 2487, 2650 |
| AcoI | YGGCCR | 2 cut(s) | 1317, 3078 |
| AcsI | RAATTY | 4 cut(s) | 662, 1268, 1819, 3164 |
| AcuI | CTGAAG | 6 cut(s) | 293, 399, 1209, 2289, 2723, 3038 |
| AcyI | GRCGYC | 1 cut(s) | 331 |
| AfaI | GTAC | 7 cut(s) | 195, 1214, 1763, 2210, 2727, 3150, 3242 |
| AflIII | ACRYGT | 1 cut(s) | 1780 |
| AhlI | ACTAGT | 1 cut(s) | 1420 |
| AjnI | CCWGG | 8 cut(s) | 153, 216, 512, 1621, 2373, 2638, 2904, 2986 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 432, 464 |
| Alw21I | GWGCWC | 3 cut(s) | 346, 672, 1181 |
| Alw26I | GTCTC | 6 cut(s) | 896, 1286, 1478, 1498, 1498, 3059 |
| AlwI | GGATC | 4 cut(s) | 79, 1959, 2487, 2650 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 3377 |
| Ama87I | CYCGRG | 2 cut(s) | 1337, 3185 |
| AoxI | GGCC | 5 cut(s) | 224, 1317, 2742, 3078, 3220 |
| ApaI | GGGCCC | 1 cut(s) | 228 |
| ApeKI | GCWGC | 7 cut(s) | 95, 250, 626, 637, 1112, 2137, 3362 |
| ApoI | RAATTY | 4 cut(s) | 662, 1268, 1819, 3164 |
| AseI | ATTAAT | 1 cut(s) | 240 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 849, 3102 |
| AspLEI | GCGC | 3 cut(s) | 333, 1117, 2179 |
| AsuHPI | GGTGA | 8 cut(s) | 948, 1475, 1714, 1819, 2665, 2933, 3214, 3289 |
| AvaI | CYCGRG | 2 cut(s) | 1337, 3185 |
| AvaII | GGWCC | 6 cut(s) | 187, 598, 897, 928, 1576, 2785 |
| BaeGI | GKGCMC | 1 cut(s) | 228 |
| BalI | TGGCCA | 2 cut(s) | 1319, 3080 |
| BanI | GGYRCC | 2 cut(s) | 330, 832 |
| BanII | GRGCYC | 3 cut(s) | 228, 346, 672 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2192, 2224 |
| BbsI | GAAGAC | 6 cut(s) | 705, 1063, 1139, 1872, 2579, 3264 |
| Bbv12I | GWGCWC | 3 cut(s) | 346, 672, 1181 |
| BbvI | GCAGC | 7 cut(s) | 82, 237, 638, 649, 1099, 2149, 3349 |
| BceAI | ACGGC | 2 cut(s) | 2017, 3207 |
| BciT130I | CCWGG | 8 cut(s) | 155, 218, 514, 1623, 2375, 2640, 2906, 2988 |
| BciVI | GTATCC | 1 cut(s) | 140 |
| BclI | TGATCA | 1 cut(s) | 1030 |
| BcoDI | GTCTC | 6 cut(s) | 896, 1286, 1478, 1498, 1498, 3059 |
| BcuI | ACTAGT | 1 cut(s) | 1420 |
| BfaI | CTAG | 5 cut(s) | 1421, 1497, 2600, 2754, 2876 |
| BfmI | CTRYAG | 6 cut(s) | 1912, 2194, 2427, 2591, 2936, 3369 |
| BfoI | RGCGCY | 1 cut(s) | 334 |
| BfuI | GTATCC | 1 cut(s) | 140 |
| BglII | AGATCT | 1 cut(s) | 1036 |
| BisI | GCNGC | 7 cut(s) | 96, 251, 627, 638, 1113, 2138, 3363 |
| BlsI | GCNGC | 7 cut(s) | 97, 252, 628, 639, 1114, 2139, 3364 |
| BmcAI | AGTACT | 1 cut(s) | 2727 |
| Bme1390I | CCNGG | 8 cut(s) | 155, 218, 514, 1623, 2375, 2640, 2906, 2988 |
| Bme18I | GGWCC | 6 cut(s) | 187, 598, 897, 928, 1576, 2785 |
| BmeT110I | CYCGRG | 2 cut(s) | 1337, 3185 |
| BmiI | GGNNCC | 6 cut(s) | 226, 332, 723, 834, 929, 2065 |
| BmrFI | CCNGG | 8 cut(s) | 155, 218, 514, 1623, 2375, 2640, 2906, 2988 |
| BmrI | ACTGGG | 4 cut(s) | 222, 1317, 2062, 3208 |
| BmsI | GCATC | 7 cut(s) | 305, 1219, 1588, 2472, 2963, 3052, 3419 |
| BmuI | ACTGGG | 4 cut(s) | 222, 1317, 2062, 3208 |
| BoxI | GACNNNNGTC | 2 cut(s) | 1067, 1490 |
| BpiI | GAAGAC | 6 cut(s) | 705, 1063, 1139, 1872, 2579, 3264 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1266, 1298 |
| BpmI | CTGGAG | 3 cut(s) | 1605, 2357, 3155 |
| Bpu10I | CCTNAGC | 2 cut(s) | 548, 893 |
| BpuEI | CTTGAG | 2 cut(s) | 2395, 2589 |
| Bsa29I | ATCGAT | 1 cut(s) | 1984 |
| BsaBI | GATNNNNATC | 3 cut(s) | 810, 1035, 2484 |
| BsaHI | GRCGYC | 1 cut(s) | 331 |
| BsaI | GGTCTC | 1 cut(s) | 1286 |
| BsaJI | CCNNGG | 9 cut(s) | 513, 1239, 1320, 1579, 2374, 2497, 2639, 2904, 2905 |
| BsaWI | WCCGGW | 1 cut(s) | 682 |
| Bse1I | ACTGG | 7 cut(s) | 228, 604, 1262, 1312, 1515, 2068, 3214 |
| Bse3DI | GCAATG | 3 cut(s) | 1215, 1704, 2835 |
| Bse8I | GATNNNNATC | 3 cut(s) | 810, 1035, 2484 |
| BseBI | CCWGG | 8 cut(s) | 155, 218, 514, 1623, 2375, 2640, 2906, 2988 |
| BseCI | ATCGAT | 1 cut(s) | 1984 |
| BseDI | CCNNGG | 9 cut(s) | 513, 1239, 1320, 1579, 2374, 2497, 2639, 2904, 2905 |
| BseGI | GGATG | 9 cut(s) | 163, 377, 432, 811, 1447, 1695, 2476, 3414, 3434 |
| BseJI | GATNNNNATC | 3 cut(s) | 810, 1035, 2484 |
| BseMI | GCAATG | 3 cut(s) | 1215, 1704, 2835 |
| BseMII | CTCAG | 4 cut(s) | 332, 954, 1079, 2940 |
| BseNI | ACTGG | 7 cut(s) | 228, 604, 1262, 1312, 1515, 2068, 3214 |
| BseRI | GAGGAG | 1 cut(s) | 80 |
| BseSI | GKGCMC | 1 cut(s) | 228 |
| BseXI | GCAGC | 7 cut(s) | 82, 237, 638, 649, 1099, 2149, 3349 |
| BseYI | CCCAGC | 1 cut(s) | 3155 |
| BsgI | GTGCAG | 2 cut(s) | 345, 1164 |
| Bsh1236I | CGCG | 3 cut(s) | 192, 1117, 2177 |
| Bsh1285I | CGRYCG | 1 cut(s) | 3387 |
| BshFI | GGCC | 5 cut(s) | 226, 1319, 2744, 3080, 3222 |
| BshNI | GGYRCC | 2 cut(s) | 330, 832 |
| BshVI | ATCGAT | 1 cut(s) | 1984 |
| BsiEI | CGRYCG | 1 cut(s) | 3387 |
| BsiHKAI | GWGCWC | 3 cut(s) | 346, 672, 1181 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1337, 3185 |
| BsiSI | CCGG | 1 cut(s) | 683 |
| BslFI | GGGAC | 1 cut(s) | 941 |
| BsmAI | GTCTC | 6 cut(s) | 896, 1286, 1478, 1498, 1498, 3059 |
| BsmFI | GGGAC | 1 cut(s) | 941 |
| BsmI | GAATGC | 1 cut(s) | 2216 |
| BsnI | GGCC | 5 cut(s) | 226, 1319, 2744, 3080, 3222 |
| Bso31I | GGTCTC | 1 cut(s) | 1286 |
| BsoBI | CYCGRG | 2 cut(s) | 1337, 3185 |
| Bsp120I | GGGCCC | 1 cut(s) | 224 |
| Bsp1286I | GDGCHC | 4 cut(s) | 228, 346, 672, 1181 |
| Bsp1407I | TGTACA | 1 cut(s) | 1212 |
| Bsp19I | CCATGG | 2 cut(s) | 1320, 2497 |
| BspACI | CCGC | 7 cut(s) | 190, 1470, 2135, 2451, 2771, 3350, 3387 |
| BspANI | GGCC | 5 cut(s) | 226, 1319, 2744, 3080, 3222 |
| BspCNI | CTCAG | 4 cut(s) | 331, 955, 1078, 2939 |
| BspDI | ATCGAT | 1 cut(s) | 1984 |
| BspFNI | CGCG | 3 cut(s) | 192, 1117, 2177 |
| BspHI | TCATGA | 1 cut(s) | 772 |
| BspLI | GGNNCC | 6 cut(s) | 226, 332, 723, 834, 929, 2065 |
| BspMAI | CTGCAG | 2 cut(s) | 2595, 3373 |
| BspPI | GGATC | 4 cut(s) | 79, 1959, 2487, 2650 |
| BspQI | GCTCTTC | 2 cut(s) | 1169, 2877 |
| BspT107I | GGYRCC | 2 cut(s) | 330, 832 |
| BspTNI | GGTCTC | 1 cut(s) | 1286 |
| BsrDI | GCAATG | 3 cut(s) | 1215, 1704, 2835 |
| BsrGI | TGTACA | 1 cut(s) | 1212 |
| BsrI | ACTGG | 7 cut(s) | 228, 604, 1262, 1312, 1515, 2068, 3214 |
| BssECI | CCNNGG | 9 cut(s) | 513, 1239, 1320, 1579, 2374, 2497, 2639, 2904, 2905 |
| BssNAI | GTATAC | 1 cut(s) | 2532 |
| BssNI | GRCGYC | 1 cut(s) | 331 |
| BssT1I | CCWWGG | 3 cut(s) | 1320, 1579, 2497 |
| Bst1107I | GTATAC | 1 cut(s) | 2532 |
| Bst2UI | CCWGG | 8 cut(s) | 155, 218, 514, 1623, 2375, 2640, 2906, 2988 |
| Bst4CI | ACNGT | 8 cut(s) | 436, 655, 798, 832, 907, 1831, 2431, 2578 |
| Bst6I | CTCTTC | 6 cut(s) | 541, 855, 1169, 2643, 2877, 3230 |
| BstACI | GRCGYC | 1 cut(s) | 331 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1151, 2797 |
| BstAUI | TGTACA | 1 cut(s) | 1212 |
| BstC8I | GCNNGC | 4 cut(s) | 75, 255, 1603, 2778 |
| BstDSI | CCRYGG | 2 cut(s) | 1320, 2497 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 517 |
| BstF5I | GGATG | 9 cut(s) | 163, 377, 432, 811, 1447, 1695, 2476, 3414, 3434 |
| BstFNI | CGCG | 3 cut(s) | 192, 1117, 2177 |
| BstH2I | RGCGCY | 1 cut(s) | 334 |
| BstHHI | GCGC | 3 cut(s) | 333, 1117, 2179 |
| BstMAI | GTCTC | 6 cut(s) | 896, 1286, 1478, 1498, 1498, 3059 |
| BstMCI | CGRYCG | 1 cut(s) | 3387 |
| BstNI | CCWGG | 8 cut(s) | 155, 218, 514, 1623, 2375, 2640, 2906, 2988 |
| BstNSI | RCATGY | 2 cut(s) | 1736, 1784 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 1067, 1490 |
| BstSCI | CCNGG | 8 cut(s) | 153, 216, 512, 1621, 2373, 2638, 2904, 2986 |
| BstSFI | CTRYAG | 6 cut(s) | 1912, 2194, 2427, 2591, 2936, 3369 |
| BstSLI | GKGCMC | 1 cut(s) | 228 |
| BstUI | CGCG | 3 cut(s) | 192, 1117, 2177 |
| BstV1I | GCAGC | 7 cut(s) | 82, 237, 638, 649, 1099, 2149, 3349 |
| BstV2I | GAAGAC | 6 cut(s) | 705, 1063, 1139, 1872, 2579, 3264 |
| BstX2I | RGATCY | 2 cut(s) | 1036, 2479 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 461, 1374 |
| BstYI | RGATCY | 2 cut(s) | 1036, 2479 |
| BstZ17I | GTATAC | 1 cut(s) | 2532 |
| Bsu15I | ATCGAT | 1 cut(s) | 1984 |
| BsuI | GTATCC | 1 cut(s) | 140 |
| BsuRI | GGCC | 5 cut(s) | 226, 1319, 2744, 3080, 3222 |
| BsuTUI | ATCGAT | 1 cut(s) | 1984 |
| BtgI | CCRYGG | 2 cut(s) | 1320, 2497 |
| BtsCI | GGATG | 9 cut(s) | 163, 377, 432, 811, 1447, 1695, 2476, 3414, 3434 |
| BtsI | GCAGTG | 2 cut(s) | 1074, 1716 |
| BtsIMutI | CAGTG | 7 cut(s) | 235, 1074, 1179, 1716, 1827, 2082, 2583 |
| Cac8I | GCNNGC | 4 cut(s) | 75, 255, 1603, 2778 |
| CaiI | CAGNNNCTG | 1 cut(s) | 3377 |
| CciI | TCATGA | 1 cut(s) | 772 |
| CfoI | GCGC | 3 cut(s) | 333, 1117, 2179 |
| ClaI | ATCGAT | 1 cut(s) | 1984 |
| CseI | GACGC | 3 cut(s) | 1619, 2312, 2356 |
| Csp6I | GTAC | 7 cut(s) | 194, 1213, 1762, 2209, 2726, 3149, 3241 |
| CviQI | GTAC | 7 cut(s) | 194, 1213, 1762, 2209, 2726, 3149, 3241 |
| DinI | GGCGCC | 1 cut(s) | 332 |
| DraI | TTTAAA | 1 cut(s) | 1978 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 3302 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 3302 |
| EaeI | YGGCCR | 2 cut(s) | 1317, 3078 |
| Eam1104I | CTCTTC | 6 cut(s) | 541, 855, 1169, 2643, 2877, 3230 |
| EarI | CTCTTC | 6 cut(s) | 541, 855, 1169, 2643, 2877, 3230 |
| EciI | GGCGGA | 1 cut(s) | 1485 |
| Ecl136II | GAGCTC | 2 cut(s) | 344, 670 |
| Eco130I | CCWWGG | 3 cut(s) | 1320, 1579, 2497 |
| Eco24I | GRGCYC | 3 cut(s) | 228, 346, 672 |
| Eco31I | GGTCTC | 1 cut(s) | 1286 |
| Eco32I | GATATC | 1 cut(s) | 2257 |
| Eco47I | GGWCC | 6 cut(s) | 187, 598, 897, 928, 1576, 2785 |
| Eco53kI | GAGCTC | 2 cut(s) | 344, 670 |
| Eco57I | CTGAAG | 6 cut(s) | 293, 399, 1209, 2289, 2723, 3038 |
| Eco88I | CYCGRG | 2 cut(s) | 1337, 3185 |
| EcoICRI | GAGCTC | 2 cut(s) | 344, 670 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 517 |
| EcoO109I | RGGNCCY | 2 cut(s) | 928, 1576 |
| EcoRI | GAATTC | 1 cut(s) | 3164 |
| EcoRII | CCWGG | 8 cut(s) | 153, 216, 512, 1621, 2373, 2638, 2904, 2986 |
| EcoRV | GATATC | 1 cut(s) | 2257 |
| EcoT14I | CCWWGG | 3 cut(s) | 1320, 1579, 2497 |
| EcoT22I | ATGCAT | 1 cut(s) | 1047 |
| EcoT38I | GRGCYC | 3 cut(s) | 228, 346, 672 |
| EgeI | GGCGCC | 1 cut(s) | 332 |
| EheI | GGCGCC | 1 cut(s) | 332 |
| ErhI | CCWWGG | 3 cut(s) | 1320, 1579, 2497 |
| FaqI | GGGAC | 1 cut(s) | 941 |
| FauI | CCCGC | 3 cut(s) | 2142, 2444, 3357 |
| FauNDI | CATATG | 1 cut(s) | 1139 |
| FbaI | TGATCA | 1 cut(s) | 1030 |
| FblI | GTMKAC | 2 cut(s) | 1519, 2531 |
| Fnu4HI | GCNGC | 7 cut(s) | 96, 251, 627, 638, 1113, 2138, 3363 |
| FokI | GGATG | 9 cut(s) | 170, 384, 439, 818, 1454, 1702, 2483, 3421, 3441 |
| FriOI | GRGCYC | 3 cut(s) | 228, 346, 672 |
| Fsp4HI | GCNGC | 7 cut(s) | 96, 251, 627, 638, 1113, 2138, 3363 |
| FspBI | CTAG | 5 cut(s) | 1421, 1497, 2600, 2754, 2876 |
| GlaI | GCGC | 3 cut(s) | 332, 1116, 2178 |
| GluI | GCNGC | 7 cut(s) | 96, 251, 627, 638, 1113, 2138, 3363 |
| GsaI | CCCAGC | 1 cut(s) | 3159 |
| GsuI | CTGGAG | 3 cut(s) | 1605, 2357, 3155 |
| HaeII | RGCGCY | 1 cut(s) | 334 |
| HaeIII | GGCC | 5 cut(s) | 226, 1319, 2744, 3080, 3222 |
| HapII | CCGG | 1 cut(s) | 683 |
| HgaI | GACGC | 3 cut(s) | 1619, 2312, 2356 |
| HhaI | GCGC | 3 cut(s) | 333, 1117, 2179 |
| Hin1I | GRCGYC | 1 cut(s) | 331 |
| Hin6I | GCGC | 3 cut(s) | 331, 1115, 2177 |
| HinP1I | GCGC | 3 cut(s) | 331, 1115, 2177 |
| HincII | GTYRAC | 4 cut(s) | 1255, 1520, 2901, 3339 |
| HindII | GTYRAC | 4 cut(s) | 1255, 1520, 2901, 3339 |
| HindIII | AAGCTT | 4 cut(s) | 275, 1970, 2607, 3290 |
| HpaII | CCGG | 1 cut(s) | 683 |
| HphI | GGTGA | 8 cut(s) | 948, 1475, 1714, 1819, 2665, 2933, 3214, 3289 |
| Hpy99I | CGWCG | 1 cut(s) | 3038 |
| HpyCH4III | ACNGT | 8 cut(s) | 436, 655, 798, 832, 907, 1831, 2431, 2578 |
| HpyCH4IV | ACGT | 2 cut(s) | 1293, 1764 |
| HpySE526I | ACGT | 2 cut(s) | 1293, 1764 |
| Hsp92I | GRCGYC | 1 cut(s) | 331 |
| HspAI | GCGC | 3 cut(s) | 331, 1115, 2177 |
| KasI | GGCGCC | 1 cut(s) | 330 |
| Ksp22I | TGATCA | 1 cut(s) | 1030 |
| LguI | GCTCTTC | 2 cut(s) | 1169, 2877 |
| LmnI | GCTCC | 4 cut(s) | 544, 721, 2773, 3370 |
| Lsp1109I | GCAGC | 7 cut(s) | 82, 237, 638, 649, 1099, 2149, 3349 |
| LweI | GCATC | 7 cut(s) | 305, 1219, 1588, 2472, 2963, 3052, 3419 |
| MaeI | CTAG | 5 cut(s) | 1421, 1497, 2600, 2754, 2876 |
| MaeII | ACGT | 2 cut(s) | 1293, 1764 |
| MaeIII | GTNAC | 9 cut(s) | 991, 1243, 1807, 1963, 2095, 2171, 2380, 2921, 3178 |
| MfeI | CAATTG | 5 cut(s) | 198, 1233, 1722, 2234, 2805 |
| MflI | RGATCY | 2 cut(s) | 1036, 2479 |
| MhlI | GDGCHC | 4 cut(s) | 228, 346, 672, 1181 |
| MlsI | TGGCCA | 2 cut(s) | 1319, 3080 |
| MluNI | TGGCCA | 2 cut(s) | 1319, 3080 |
| Mly113I | GGCGCC | 1 cut(s) | 331 |
| MlyI | GAGTC | 4 cut(s) | 1057, 2918, 3175, 3290 |
| MmeI | TCCRAC | 3 cut(s) | 42, 1810, 2303 |
| Mox20I | TGGCCA | 2 cut(s) | 1319, 3080 |
| Mph1103I | ATGCAT | 1 cut(s) | 1047 |
| MroXI | GAANNNNTTC | 2 cut(s) | 849, 3102 |
| MscI | TGGCCA | 2 cut(s) | 1319, 3080 |
| MseI | TTAA | 7 cut(s) | 240, 617, 1304, 1940, 1977, 2561, 2721 |
| MslI | CAYNNNNRTG | 3 cut(s) | 714, 1372, 3093 |
| Msp20I | TGGCCA | 2 cut(s) | 1319, 3080 |
| MspA1I | CMGCKG | 1 cut(s) | 271 |
| MspI | CCGG | 1 cut(s) | 683 |
| MspR9I | CCNGG | 8 cut(s) | 155, 218, 514, 1623, 2375, 2640, 2906, 2988 |
| MunI | CAATTG | 5 cut(s) | 198, 1233, 1722, 2234, 2805 |
| Mva1269I | GAATGC | 1 cut(s) | 2216 |
| MvaI | CCWGG | 8 cut(s) | 155, 218, 514, 1623, 2375, 2640, 2906, 2988 |
| MvnI | CGCG | 3 cut(s) | 192, 1117, 2177 |
| NarI | GGCGCC | 1 cut(s) | 331 |
| NcoI | CCATGG | 2 cut(s) | 1320, 2497 |
| NdeI | CATATG | 1 cut(s) | 1139 |
| NlaIV | GGNNCC | 6 cut(s) | 226, 332, 723, 834, 929, 2065 |
| NmeAIII | GCCGAG | 1 cut(s) | 1264 |
| NmuCI | GTSAC | 6 cut(s) | 991, 1807, 1963, 2171, 2921, 3178 |
| NsiI | ATGCAT | 1 cut(s) | 1047 |
| NspI | RCATGY | 2 cut(s) | 1736, 1784 |
| PaeR7I | CTCGAG | 2 cut(s) | 1337, 3185 |
| PagI | TCATGA | 1 cut(s) | 772 |
| PasI | CCCWGGG | 1 cut(s) | 2905 |
| PciI | ACATGT | 1 cut(s) | 1780 |
| PciSI | GCTCTTC | 2 cut(s) | 1169, 2877 |
| PctI | GAATGC | 1 cut(s) | 2216 |
| PdmI | GAANNNNTTC | 2 cut(s) | 849, 3102 |
| PflFI | GACNNNGTC | 1 cut(s) | 1829 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 2050, 2856 |
| PfoI | TCCNGGA | 2 cut(s) | 153, 2986 |
| PkrI | GCNGC | 7 cut(s) | 97, 252, 628, 639, 1114, 2139, 3364 |
| PleI | GAGTC | 4 cut(s) | 1057, 2918, 3175, 3290 |
| PluTI | GGCGCC | 1 cut(s) | 334 |
| PpsI | GAGTC | 4 cut(s) | 1057, 2918, 3175, 3290 |
| PpuMI | RGGWCCY | 2 cut(s) | 928, 1576 |
| PscI | ACATGT | 1 cut(s) | 1780 |
| PshAI | GACNNNNGTC | 2 cut(s) | 1067, 1490 |
| PshBI | ATTAAT | 1 cut(s) | 240 |
| PsiI | TTATAA | 2 cut(s) | 3311, 3396 |
| Psp124BI | GAGCTC | 2 cut(s) | 346, 672 |
| Psp1406I | AACGTT | 1 cut(s) | 1293 |
| Psp5II | RGGWCCY | 2 cut(s) | 928, 1576 |
| Psp6I | CCWGG | 8 cut(s) | 153, 216, 512, 1621, 2373, 2638, 2904, 2986 |
| PspFI | CCCAGC | 1 cut(s) | 3155 |
| PspGI | CCWGG | 8 cut(s) | 153, 216, 512, 1621, 2373, 2638, 2904, 2986 |
| PspN4I | GGNNCC | 6 cut(s) | 226, 332, 723, 834, 929, 2065 |
| PspOMI | GGGCCC | 1 cut(s) | 224 |
| PspPPI | RGGWCCY | 2 cut(s) | 928, 1576 |
| PspXI | VCTCGAGB | 1 cut(s) | 1337 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2616, 2648 |
| PstI | CTGCAG | 2 cut(s) | 2595, 3373 |
| PstNI | CAGNNNCTG | 1 cut(s) | 3377 |
| PsuI | RGATCY | 2 cut(s) | 1036, 2479 |
| PsyI | GACNNNGTC | 1 cut(s) | 1829 |
| PvuII | CAGCTG | 1 cut(s) | 271 |
| RsaI | GTAC | 7 cut(s) | 195, 1214, 1763, 2210, 2727, 3150, 3242 |
| RsaNI | GTAC | 7 cut(s) | 194, 1213, 1762, 2209, 2726, 3149, 3241 |
| RseI | CAYNNNNRTG | 3 cut(s) | 714, 1372, 3093 |
| SacI | GAGCTC | 2 cut(s) | 346, 672 |
| SalI | GTCGAC | 1 cut(s) | 1518 |
| SapI | GCTCTTC | 2 cut(s) | 1169, 2877 |
| SaqAI | TTAA | 7 cut(s) | 240, 617, 1304, 1940, 1977, 2561, 2721 |
| SatI | GCNGC | 7 cut(s) | 96, 251, 627, 638, 1113, 2138, 3363 |
| ScaI | AGTACT | 1 cut(s) | 2727 |
| SchI | GAGTC | 4 cut(s) | 1057, 2918, 3175, 3290 |
| ScrFI | CCNGG | 8 cut(s) | 155, 218, 514, 1623, 2375, 2640, 2906, 2988 |
| SduI | GDGCHC | 4 cut(s) | 228, 346, 672, 1181 |
| SfaNI | GCATC | 7 cut(s) | 305, 1219, 1588, 2472, 2963, 3052, 3419 |
| SfcI | CTRYAG | 6 cut(s) | 1912, 2194, 2427, 2591, 2936, 3369 |
| SfoI | GGCGCC | 1 cut(s) | 332 |
| Sfr274I | CTCGAG | 2 cut(s) | 1337, 3185 |
| SinI | GGWCC | 6 cut(s) | 187, 598, 897, 928, 1576, 2785 |
| SlaI | CTCGAG | 2 cut(s) | 1337, 3185 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 714, 1372, 3093 |
| SmlI | CTYRAG | 4 cut(s) | 1337, 2410, 2604, 3185 |
| SmoI | CTYRAG | 4 cut(s) | 1337, 2410, 2604, 3185 |
| SpeI | ACTAGT | 1 cut(s) | 1420 |
| SsiI | CCGC | 7 cut(s) | 190, 1470, 2135, 2451, 2771, 3350, 3387 |
| SspDI | GGCGCC | 1 cut(s) | 330 |
| SspI | AATATT | 2 cut(s) | 779, 863 |
| SspMI | CTAG | 5 cut(s) | 1421, 1497, 2600, 2754, 2876 |
| SstI | GAGCTC | 2 cut(s) | 346, 672 |
| StyD4I | CCNGG | 8 cut(s) | 153, 216, 512, 1621, 2373, 2638, 2904, 2986 |
| StyI | CCWWGG | 3 cut(s) | 1320, 1579, 2497 |
| TaaI | ACNGT | 8 cut(s) | 436, 655, 798, 832, 907, 1831, 2431, 2578 |
| TaiI | ACGT | 2 cut(s) | 1296, 1767 |
| TaqI | TCGA | 9 cut(s) | 340, 754, 1338, 1519, 1833, 1984, 2466, 2541, 3186 |
| TatI | WGTACW | 2 cut(s) | 1212, 2725 |
| Tru1I | TTAA | 7 cut(s) | 240, 617, 1304, 1940, 1977, 2561, 2721 |
| Tru9I | TTAA | 7 cut(s) | 240, 617, 1304, 1940, 1977, 2561, 2721 |
| TscAI | CASTG | 7 cut(s) | 235, 1081, 1186, 1723, 1834, 2089, 2583 |
| TseFI | GTSAC | 6 cut(s) | 991, 1807, 1963, 2171, 2921, 3178 |
| TseI | GCWGC | 7 cut(s) | 95, 250, 626, 637, 1112, 2137, 3362 |
| Tsp45I | GTSAC | 6 cut(s) | 991, 1807, 1963, 2171, 2921, 3178 |
| TspGWI | ACGGA | 3 cut(s) | 860, 999, 1417 |
| TspRI | CASTG | 7 cut(s) | 235, 1081, 1186, 1723, 1834, 2089, 2583 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1829 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 2050, 2856 |
| VpaK11BI | GGWCC | 6 cut(s) | 187, 598, 897, 928, 1576, 2785 |
| VspI | ATTAAT | 1 cut(s) | 240 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 517 |
| XapI | RAATTY | 4 cut(s) | 662, 1268, 1819, 3164 |
| XbaI | TCTAGA | 2 cut(s) | 1496, 2753 |
| XceI | RCATGY | 2 cut(s) | 1736, 1784 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 1457, 2075, 2984 |
| XhoI | CTCGAG | 2 cut(s) | 1337, 3185 |
| XmiI | GTMKAC | 2 cut(s) | 1519, 2531 |
| XmnI | GAANNNNTTC | 2 cut(s) | 849, 3102 |
| XspI | CTAG | 5 cut(s) | 1421, 1497, 2600, 2754, 2876 |
| ZrmI | AGTACT | 1 cut(s) | 2727 |
| Zsp2I | ATGCAT | 1 cut(s) | 1047 |