U5 small nuclear ribonucleoprotein 200 kDa
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| BRR2_plug | PF21188 | 113 - 173 | 6.5e-09 | Pre-mRNA-splicing helicase BRR2 plug domain |
| Helicase_PWI | PF18149 | 267 - 374 | 6.6e-33 | N-terminal helicase PWI domain |
| DEAD | PF00270 | 501 - 678 | 1.5e-31 | DEAD/DEAH box helicase |
| ResIII | PF04851 | 507 - 674 | 9.5e-13 | Type III restriction enzyme, res subunit |
| Helicase_C | PF00271 | 783 - 877 | 1.1e-09 | Helicase conserved C-terminal domain |
| WHD_SNRNP200 | PF23445 | 908 - 984 | 6.7e-24 | Winged Helix-turn-helix domain |
| Sec63 | PF02889 | 999 - 1303 | 9.3e-99 | Sec63 Brl domain |
| ResIII | PF04851 | 1345 - 1489 | 1.2e-11 | Type III restriction enzyme, res subunit |
| DEAD | PF00270 | 1346 - 1517 | 2.5e-30 | DEAD/DEAH box helicase |
| WHD_SNRNP200 | PF23445 | 1746 - 1827 | 1.2e-33 | Winged Helix-turn-helix domain |
| Sec63 | PF02889 | 1833 - 2156 | 4.6e-66 | Sec63 Brl domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 8 cut(s) | 861, 972, 1257, 1662, 2534, 3548, 4334, 5376 |
| AatII | GACGTC | 1 cut(s) | 8 |
| Acc16I | TGCGCA | 2 cut(s) | 5400, 5713 |
| Acc36I | ACCTGC | 2 cut(s) | 3972, 5265 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1615 |
| AccBSI | CCGCTC | 1 cut(s) | 4000 |
| AccI | GTMKAC | 3 cut(s) | 159, 1312, 6027 |
| AccII | CGCG | 5 cut(s) | 225, 416, 4130, 4182, 5191 |
| AccIII | TCCGGA | 1 cut(s) | 1342 |
| AclI | AACGTT | 1 cut(s) | 3234 |
| AcoI | YGGCCR | 2 cut(s) | 417, 5074 |
| AcsI | RAATTY | 8 cut(s) | 460, 976, 1159, 1902, 2334, 3122, 3493, 3825 |
| AcuI | CTGAAG | 9 cut(s) | 818, 1068, 1722, 3284, 3797, 5366, 5601, 5729, 6044 |
| AcyI | GRCGYC | 3 cut(s) | 5, 265, 3322 |
| AdeI | CACNNNGTG | 3 cut(s) | 3116, 3314, 5444 |
| AfeI | AGCGCT | 1 cut(s) | 4527 |
| AflIII | ACRYGT | 6 cut(s) | 66, 1237, 2050, 3181, 3619, 4762 |
| AgeI | ACCGGT | 1 cut(s) | 1008 |
| AhlI | ACTAGT | 2 cut(s) | 1979, 3163 |
| AjiI | CACGTC | 1 cut(s) | 69 |
| AjnI | CCWGG | 9 cut(s) | 81, 1335, 2234, 2898, 3500, 5448, 5644, 5992, 6266 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 2757, 2789, 3423, 3455, 3479, 3511 |
| Alw21I | GWGCWC | 2 cut(s) | 1031, 1564 |
| Alw44I | GTGCAC | 1 cut(s) | 1027 |
| AlwNI | CAGNNNCTG | 5 cut(s) | 382, 1777, 4786, 5108, 6398 |
| Aor13HI | TCCGGA | 1 cut(s) | 1342 |
| Aor51HI | AGCGCT | 1 cut(s) | 4527 |
| ApaLI | GTGCAC | 1 cut(s) | 1027 |
| ApoI | RAATTY | 8 cut(s) | 460, 976, 1159, 1902, 2334, 3122, 3493, 3825 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 6020, 6052 |
| AseI | ATTAAT | 1 cut(s) | 5786 |
| AsiGI | ACCGGT | 1 cut(s) | 1008 |
| Asp700I | GAANNNNTTC | 7 cut(s) | 1386, 2337, 2769, 3183, 3750, 5085, 6057 |
| AspLEI | GCGC | 9 cut(s) | 40, 225, 416, 4130, 4182, 4528, 4617, 5401, 5714 |
| AsuC2I | CCSGG | 5 cut(s) | 46, 730, 736, 4608, 5078 |
| AsuII | TTCGAA | 1 cut(s) | 5665 |
| AsuNHI | GCTAGC | 1 cut(s) | 3017 |
| AvaII | GGWCC | 9 cut(s) | 732, 1928, 2359, 2544, 3961, 5791, 6205, 6221, 6242 |
| BaeGI | GKGCMC | 2 cut(s) | 1031, 2673 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 6245, 6278 |
| BanII | GRGCYC | 6 cut(s) | 126, 544, 1468, 3337, 3370, 5317 |
| BauI | CACGAG | 6 cut(s) | 119, 1041, 1877, 2259, 3725, 4925 |
| Bbv12I | GWGCWC | 2 cut(s) | 1031, 1564 |
| BbvCI | CCTCAGC | 1 cut(s) | 897 |
| BceAI | ACGGC | 1 cut(s) | 278 |
| BciT130I | CCWGG | 9 cut(s) | 83, 1337, 2236, 2900, 3502, 5450, 5646, 5994, 6268 |
| BciVI | GTATCC | 4 cut(s) | 906, 2810, 3948, 6273 |
| BclI | TGATCA | 4 cut(s) | 987, 1984, 2961, 5904 |
| BcnI | CCSGG | 5 cut(s) | 46, 730, 736, 4608, 5078 |
| BcuI | ACTAGT | 2 cut(s) | 1979, 3163 |
| BfmI | CTRYAG | 5 cut(s) | 2196, 5117, 5344, 5942, 6390 |
| BfoI | RGCGCY | 1 cut(s) | 4529 |
| BfuAI | ACCTGC | 2 cut(s) | 3972, 5265 |
| BfuI | GTATCC | 4 cut(s) | 906, 2810, 3948, 6273 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1133 |
| BglII | AGATCT | 1 cut(s) | 2380 |
| BmcAI | AGTACT | 1 cut(s) | 4342 |
| Bme18I | GGWCC | 9 cut(s) | 732, 1928, 2359, 2544, 3961, 5791, 6205, 6221, 6242 |
| BmgBI | CACGTC | 1 cut(s) | 69 |
| BmiI | GGNNCC | 9 cut(s) | 389, 733, 1323, 1341, 2545, 2546, 3711, 5780, 6387 |
| BmrI | ACTGGG | 4 cut(s) | 1578, 3213, 4613, 5096 |
| BmtI | GCTAGC | 1 cut(s) | 3021 |
| BmuI | ACTGGG | 4 cut(s) | 1578, 3213, 4613, 5096 |
| BoxI | GACNNNNGTC | 2 cut(s) | 3006, 4052 |
| BpmI | CTGGAG | 8 cut(s) | 61, 1592, 2218, 2921, 4329, 5667, 6056, 6113 |
| Bpu10I | CCTNAGC | 2 cut(s) | 897, 4779 |
| Bpu14I | TTCGAA | 1 cut(s) | 5665 |
| BpuEI | CTTGAG | 5 cut(s) | 2778, 4523, 4886, 5274, 5618 |
| BpuMI | CCSGG | 5 cut(s) | 46, 730, 736, 4608, 5078 |
| Bsa29I | ATCGAT | 1 cut(s) | 1106 |
| BsaAI | YACGTR | 2 cut(s) | 2051, 3706 |
| BsaBI | GATNNNNATC | 2 cut(s) | 3798, 4334 |
| BsaHI | GRCGYC | 3 cut(s) | 5, 265, 3322 |
| BsaI | GGTCTC | 2 cut(s) | 2488, 4845 |
| BsaWI | WCCGGW | 4 cut(s) | 199, 1008, 1342, 3193 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 559, 589, 1070, 1100 |
| Bse118I | RCCGGY | 5 cut(s) | 95, 128, 1008, 1396, 4732 |
| Bse3DI | GCAATG | 9 cut(s) | 747, 965, 2144, 3012, 5225, 5841, 5847, 5863, 5892 |
| Bse8I | GATNNNNATC | 2 cut(s) | 3798, 4334 |
| BseAI | TCCGGA | 1 cut(s) | 1342 |
| BseBI | CCWGG | 9 cut(s) | 83, 1337, 2236, 2900, 3502, 5450, 5646, 5994, 6268 |
| BseCI | ATCGAT | 1 cut(s) | 1106 |
| BseJI | GATNNNNATC | 2 cut(s) | 3798, 4334 |
| BseMI | GCAATG | 9 cut(s) | 747, 965, 2144, 3012, 5225, 5841, 5847, 5863, 5892 |
| BseRI | GAGGAG | 8 cut(s) | 290, 293, 665, 716, 914, 1091, 1094, 2918 |
| BseSI | GKGCMC | 2 cut(s) | 1031, 2673 |
| BseX3I | CGGCCG | 1 cut(s) | 417 |
| BseYI | CCCAGC | 6 cut(s) | 382, 2414, 3317, 5773, 6125, 6173 |
| BsgI | GTGCAG | 6 cut(s) | 695, 830, 2262, 2640, 3644, 4083 |
| Bsh1236I | CGCG | 5 cut(s) | 225, 416, 4130, 4182, 5191 |
| Bsh1285I | CGRYCG | 1 cut(s) | 420 |
| BshTI | ACCGGT | 1 cut(s) | 1008 |
| BshVI | ATCGAT | 1 cut(s) | 1106 |
| BsiEI | CGRYCG | 1 cut(s) | 420 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1031, 1564 |
| BslFI | GGGAC | 6 cut(s) | 1232, 1248, 2087, 2557, 3055, 4370 |
| BsmBI | CGTCTC | 2 cut(s) | 293, 329 |
| BsmFI | GGGAC | 6 cut(s) | 1232, 1248, 2087, 2557, 3055, 4370 |
| BsmI | GAATGC | 4 cut(s) | 1475, 2764, 4677, 4807 |
| Bso31I | GGTCTC | 2 cut(s) | 2488, 4845 |
| Bsp119I | TTCGAA | 1 cut(s) | 5665 |
| Bsp1286I | GDGCHC | 9 cut(s) | 126, 544, 1031, 1468, 1564, 2673, 3337, 3370, 5317 |
| Bsp13I | TCCGGA | 1 cut(s) | 1342 |
| Bsp1407I | TGTACA | 2 cut(s) | 2829, 5638 |
| Bsp19I | CCATGG | 1 cut(s) | 3451 |
| BspDI | ATCGAT | 1 cut(s) | 1106 |
| BspEI | TCCGGA | 1 cut(s) | 1342 |
| BspFNI | CGCG | 5 cut(s) | 225, 416, 4130, 4182, 5191 |
| BspHI | TCATGA | 2 cut(s) | 3760, 4998 |
| BspLI | GGNNCC | 9 cut(s) | 389, 733, 1323, 1341, 2545, 2546, 3711, 5780, 6387 |
| BspMAI | CTGCAG | 1 cut(s) | 6394 |
| BspMI | ACCTGC | 2 cut(s) | 3972, 5265 |
| BspOI | GCTAGC | 1 cut(s) | 3021 |
| BspQI | GCTCTTC | 1 cut(s) | 5745 |
| BspT104I | TTCGAA | 1 cut(s) | 5665 |
| BspTNI | GGTCTC | 2 cut(s) | 2488, 4845 |
| BsrBI | CCGCTC | 1 cut(s) | 4000 |
| BsrDI | GCAATG | 9 cut(s) | 747, 965, 2144, 3012, 5225, 5841, 5847, 5863, 5892 |
| BsrFI | RCCGGY | 5 cut(s) | 95, 128, 1008, 1396, 4732 |
| BsrGI | TGTACA | 2 cut(s) | 2829, 5638 |
| BssAI | RCCGGY | 5 cut(s) | 95, 128, 1008, 1396, 4732 |
| BssNI | GRCGYC | 3 cut(s) | 5, 265, 3322 |
| BssSI | CACGAG | 6 cut(s) | 119, 1041, 1877, 2259, 3725, 4925 |
| BssT1I | CCWWGG | 5 cut(s) | 2296, 3451, 4089, 4215, 6496 |
| Bst2BI | CACGAG | 6 cut(s) | 119, 1041, 1877, 2259, 3725, 4925 |
| Bst2UI | CCWGG | 9 cut(s) | 83, 1337, 2236, 2900, 3502, 5450, 5646, 5994, 6268 |
| BstACI | GRCGYC | 3 cut(s) | 5, 265, 3322 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 2498, 5770 |
| BstAUI | TGTACA | 2 cut(s) | 2829, 5638 |
| BstBAI | YACGTR | 2 cut(s) | 2051, 3706 |
| BstBI | TTCGAA | 1 cut(s) | 5665 |
| BstDSI | CCRYGG | 2 cut(s) | 2997, 3451 |
| BstEII | GGTNACC | 2 cut(s) | 88, 1766 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 3505, 4203 |
| BstFNI | CGCG | 5 cut(s) | 225, 416, 4130, 4182, 5191 |
| BstH2I | RGCGCY | 1 cut(s) | 4529 |
| BstHHI | GCGC | 9 cut(s) | 40, 225, 416, 4130, 4182, 4528, 4617, 5401, 5714 |
| BstMCI | CGRYCG | 1 cut(s) | 420 |
| BstNI | CCWGG | 9 cut(s) | 83, 1337, 2236, 2900, 3502, 5450, 5646, 5994, 6268 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 3006, 4052 |
| BstPI | GGTNACC | 2 cut(s) | 88, 1766 |
| BstSFI | CTRYAG | 5 cut(s) | 2196, 5117, 5344, 5942, 6390 |
| BstSLI | GKGCMC | 2 cut(s) | 1031, 2673 |
| BstUI | CGCG | 5 cut(s) | 225, 416, 4130, 4182, 5191 |
| BstX2I | RGATCY | 8 cut(s) | 1349, 2380, 2449, 2890, 3214, 4783, 5716, 6366 |
| BstXI | CCANNNNNNTGG | 4 cut(s) | 85, 3004, 3452, 4353 |
| BstYI | RGATCY | 8 cut(s) | 1349, 2380, 2449, 2890, 3214, 4783, 5716, 6366 |
| BstZI | CGGCCG | 1 cut(s) | 417 |
| Bsu15I | ATCGAT | 1 cut(s) | 1106 |
| BsuI | GTATCC | 4 cut(s) | 906, 2810, 3948, 6273 |
| BsuTUI | ATCGAT | 1 cut(s) | 1106 |
| BtgI | CCRYGG | 2 cut(s) | 2997, 3451 |
| BtgZI | GCGATG | 1 cut(s) | 4387 |
| BtrI | CACGTC | 1 cut(s) | 69 |
| BtsI | GCAGTG | 5 cut(s) | 887, 3791, 4698, 4885, 6320 |
| BveI | ACCTGC | 2 cut(s) | 3972, 5265 |
| CaiI | CAGNNNCTG | 5 cut(s) | 382, 1777, 4786, 5108, 6398 |
| CciI | TCATGA | 2 cut(s) | 3760, 4998 |
| CfoI | GCGC | 9 cut(s) | 40, 225, 416, 4130, 4182, 4528, 4617, 5401, 5714 |
| Cfr10I | RCCGGY | 5 cut(s) | 95, 128, 1008, 1396, 4732 |
| ClaI | ATCGAT | 1 cut(s) | 1106 |
| CseI | GACGC | 4 cut(s) | 254, 346, 3311, 4367 |
| CspAI | ACCGGT | 1 cut(s) | 1008 |
| DraI | TTTAAA | 1 cut(s) | 4308 |
| DraIII | CACNNNGTG | 3 cut(s) | 3116, 3314, 5444 |
| EaeI | YGGCCR | 2 cut(s) | 417, 5074 |
| EagI | CGGCCG | 1 cut(s) | 417 |
| EclXI | CGGCCG | 1 cut(s) | 417 |
| Eco130I | CCWWGG | 5 cut(s) | 2296, 3451, 4089, 4215, 6496 |
| Eco147I | AGGCCT | 2 cut(s) | 2098, 4163 |
| Eco24I | GRGCYC | 6 cut(s) | 126, 544, 1468, 3337, 3370, 5317 |
| Eco31I | GGTCTC | 2 cut(s) | 2488, 4845 |
| Eco32I | GATATC | 1 cut(s) | 1837 |
| Eco47I | GGWCC | 9 cut(s) | 732, 1928, 2359, 2544, 3961, 5791, 6205, 6221, 6242 |
| Eco47III | AGCGCT | 1 cut(s) | 4527 |
| Eco52I | CGGCCG | 1 cut(s) | 417 |
| Eco57I | CTGAAG | 9 cut(s) | 818, 1068, 1722, 3284, 3797, 5366, 5601, 5729, 6044 |
| Eco91I | GGTNACC | 2 cut(s) | 88, 1766 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 3505, 4203 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1928, 2068, 2544 |
| EcoO65I | GGTNACC | 2 cut(s) | 88, 1766 |
| EcoRI | GAATTC | 1 cut(s) | 460 |
| EcoRII | CCWGG | 9 cut(s) | 81, 1335, 2234, 2898, 3500, 5448, 5644, 5992, 6266 |
| EcoRV | GATATC | 1 cut(s) | 1837 |
| EcoT14I | CCWWGG | 5 cut(s) | 2296, 3451, 4089, 4215, 6496 |
| EcoT22I | ATGCAT | 1 cut(s) | 4490 |
| EcoT38I | GRGCYC | 6 cut(s) | 126, 544, 1468, 3337, 3370, 5317 |
| ErhI | CCWWGG | 5 cut(s) | 2296, 3451, 4089, 4215, 6496 |
| Esp3I | CGTCTC | 2 cut(s) | 293, 329 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 3191, 3223, 4392, 4424 |
| FaqI | GGGAC | 6 cut(s) | 1232, 1248, 2087, 2557, 3055, 4370 |
| FauI | CCCGC | 1 cut(s) | 141 |
| FauNDI | CATATG | 3 cut(s) | 2392, 2644, 4124 |
| FbaI | TGATCA | 4 cut(s) | 987, 1984, 2961, 5904 |
| FblI | GTMKAC | 3 cut(s) | 159, 1312, 6027 |
| FriOI | GRGCYC | 6 cut(s) | 126, 544, 1468, 3337, 3370, 5317 |
| FspAI | RTGCGCAY | 1 cut(s) | 5400 |
| FspI | TGCGCA | 2 cut(s) | 5400, 5713 |
| GlaI | GCGC | 9 cut(s) | 39, 224, 415, 4129, 4181, 4527, 4616, 5400, 5713 |
| GsaI | CCCAGC | 6 cut(s) | 386, 2418, 3321, 5777, 6129, 6177 |
| GsuI | CTGGAG | 8 cut(s) | 61, 1592, 2218, 2921, 4329, 5667, 6056, 6113 |
| HaeII | RGCGCY | 1 cut(s) | 4529 |
| HgaI | GACGC | 4 cut(s) | 254, 346, 3311, 4367 |
| HhaI | GCGC | 9 cut(s) | 40, 225, 416, 4130, 4182, 4528, 4617, 5401, 5714 |
| Hin1I | GRCGYC | 3 cut(s) | 5, 265, 3322 |
| Hin6I | GCGC | 9 cut(s) | 38, 223, 414, 4128, 4180, 4526, 4615, 5399, 5712 |
| HinP1I | GCGC | 9 cut(s) | 38, 223, 414, 4128, 4180, 4526, 4615, 5399, 5712 |
| HincII | GTYRAC | 2 cut(s) | 1114, 4284 |
| HindII | GTYRAC | 2 cut(s) | 1114, 4284 |
| HindIII | AAGCTT | 4 cut(s) | 852, 890, 1883, 2799 |
| HpaI | GTTAAC | 1 cut(s) | 4284 |
| Hpy99I | CGWCG | 2 cut(s) | 230, 270 |
| HpyCH4IV | ACGT | 7 cut(s) | 5, 68, 2050, 2121, 3181, 3234, 3705 |
| HpySE526I | ACGT | 7 cut(s) | 5, 68, 2050, 2121, 3181, 3234, 3705 |
| Hsp92I | GRCGYC | 3 cut(s) | 5, 265, 3322 |
| HspAI | GCGC | 9 cut(s) | 38, 223, 414, 4128, 4180, 4526, 4615, 5399, 5712 |
| KflI | GGGWCCC | 1 cut(s) | 2544 |
| Kpn2I | TCCGGA | 1 cut(s) | 1342 |
| KroI | GCCGGC | 1 cut(s) | 1396 |
| KroNI | GCCGGC | 1 cut(s) | 1398 |
| Ksp22I | TGATCA | 4 cut(s) | 987, 1984, 2961, 5904 |
| KspAI | GTTAAC | 1 cut(s) | 4284 |
| LguI | GCTCTTC | 1 cut(s) | 5745 |
| MaeII | ACGT | 7 cut(s) | 5, 68, 2050, 2121, 3181, 3234, 3705 |
| MbiI | CCGCTC | 1 cut(s) | 4000 |
| MfeI | CAATTG | 3 cut(s) | 2159, 3101, 4704 |
| MflI | RGATCY | 8 cut(s) | 1349, 2380, 2449, 2890, 3214, 4783, 5716, 6366 |
| MhlI | GDGCHC | 9 cut(s) | 126, 544, 1031, 1468, 1564, 2673, 3337, 3370, 5317 |
| MlyI | GAGTC | 9 cut(s) | 149, 1483, 1774, 1795, 3280, 4042, 4889, 5346, 5924 |
| MmeI | TCCRAC | 5 cut(s) | 96, 474, 2104, 3462, 4792 |
| Mph1103I | ATGCAT | 1 cut(s) | 4490 |
| MroI | TCCGGA | 1 cut(s) | 1342 |
| MroNI | GCCGGC | 1 cut(s) | 1396 |
| MroXI | GAANNNNTTC | 7 cut(s) | 1386, 2337, 2769, 3183, 3750, 5085, 6057 |
| MslI | CAYNNNNRTG | 4 cut(s) | 1242, 2837, 6134, 6512 |
| MspA1I | CMGCKG | 4 cut(s) | 382, 1285, 2440, 3262 |
| MunI | CAATTG | 3 cut(s) | 2159, 3101, 4704 |
| Mva1269I | GAATGC | 4 cut(s) | 1475, 2764, 4677, 4807 |
| MvaI | CCWGG | 9 cut(s) | 83, 1337, 2236, 2900, 3502, 5450, 5646, 5994, 6268 |
| MvnI | CGCG | 5 cut(s) | 225, 416, 4130, 4182, 5191 |
| NaeI | GCCGGC | 1 cut(s) | 1398 |
| NciI | CCSGG | 5 cut(s) | 46, 730, 736, 4608, 5078 |
| NcoI | CCATGG | 1 cut(s) | 3451 |
| NdeI | CATATG | 3 cut(s) | 2392, 2644, 4124 |
| NgoMIV | GCCGGC | 1 cut(s) | 1396 |
| NheI | GCTAGC | 1 cut(s) | 3017 |
| NlaIV | GGNNCC | 9 cut(s) | 389, 733, 1323, 1341, 2545, 2546, 3711, 5780, 6387 |
| NmeAIII | GCCGAG | 2 cut(s) | 423, 4348 |
| NsbI | TGCGCA | 2 cut(s) | 5400, 5713 |
| NsiI | ATGCAT | 1 cut(s) | 4490 |
| NspV | TTCGAA | 1 cut(s) | 5665 |
| PaeI | GCATGC | 2 cut(s) | 1127, 4180 |
| PagI | TCATGA | 2 cut(s) | 3760, 4998 |
| PceI | AGGCCT | 2 cut(s) | 2098, 4163 |
| PciI | ACATGT | 3 cut(s) | 1237, 3619, 4762 |
| PciSI | GCTCTTC | 1 cut(s) | 5745 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 344, 2266 |
| PctI | GAATGC | 4 cut(s) | 1475, 2764, 4677, 4807 |
| PdiI | GCCGGC | 1 cut(s) | 1398 |
| PdmI | GAANNNNTTC | 7 cut(s) | 1386, 2337, 2769, 3183, 3750, 5085, 6057 |
| PflFI | GACNNNGTC | 1 cut(s) | 2357 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1615 |
| PinAI | ACCGGT | 1 cut(s) | 1008 |
| PleI | GAGTC | 9 cut(s) | 148, 1483, 1774, 1795, 3280, 4042, 4889, 5346, 5924 |
| PpsI | GAGTC | 9 cut(s) | 148, 1483, 1774, 1795, 3280, 4042, 4889, 5346, 5924 |
| Ppu21I | YACGTR | 2 cut(s) | 2051, 3706 |
| PpuMI | RGGWCCY | 2 cut(s) | 1928, 2544 |
| PscI | ACATGT | 3 cut(s) | 1237, 3619, 4762 |
| PshAI | GACNNNNGTC | 2 cut(s) | 3006, 4052 |
| PshBI | ATTAAT | 1 cut(s) | 5786 |
| PsiI | TTATAA | 8 cut(s) | 861, 972, 1257, 1662, 2534, 3548, 4334, 5376 |
| Psp1406I | AACGTT | 1 cut(s) | 3234 |
| Psp5II | RGGWCCY | 2 cut(s) | 1928, 2544 |
| Psp6I | CCWGG | 9 cut(s) | 81, 1335, 2234, 2898, 3500, 5448, 5644, 5992, 6266 |
| PspEI | GGTNACC | 2 cut(s) | 88, 1766 |
| PspFI | CCCAGC | 6 cut(s) | 382, 2414, 3317, 5773, 6125, 6173 |
| PspGI | CCWGG | 9 cut(s) | 81, 1335, 2234, 2898, 3500, 5448, 5644, 5992, 6266 |
| PspN4I | GGNNCC | 9 cut(s) | 389, 733, 1323, 1341, 2545, 2546, 3711, 5780, 6387 |
| PspPPI | RGGWCCY | 2 cut(s) | 1928, 2544 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 41, 73 |
| PstI | CTGCAG | 1 cut(s) | 6394 |
| PstNI | CAGNNNCTG | 5 cut(s) | 382, 1777, 4786, 5108, 6398 |
| PsuI | RGATCY | 8 cut(s) | 1349, 2380, 2449, 2890, 3214, 4783, 5716, 6366 |
| PsyI | GACNNNGTC | 1 cut(s) | 2357 |
| PvuII | CAGCTG | 4 cut(s) | 382, 1285, 2440, 3262 |
| RseI | CAYNNNNRTG | 4 cut(s) | 1242, 2837, 6134, 6512 |
| SapI | GCTCTTC | 1 cut(s) | 5745 |
| ScaI | AGTACT | 1 cut(s) | 4342 |
| SchI | GAGTC | 9 cut(s) | 149, 1483, 1774, 1795, 3280, 4042, 4889, 5346, 5924 |
| SduI | GDGCHC | 9 cut(s) | 126, 544, 1031, 1468, 1564, 2673, 3337, 3370, 5317 |
| SfcI | CTRYAG | 5 cut(s) | 2196, 5117, 5344, 5942, 6390 |
| SfuI | TTCGAA | 1 cut(s) | 5665 |
| SgrAI | CRCCGGYG | 1 cut(s) | 128 |
| SinI | GGWCC | 9 cut(s) | 732, 1928, 2359, 2544, 3961, 5791, 6205, 6221, 6242 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 1242, 2837, 6134, 6512 |
| SmlI | CTYRAG | 5 cut(s) | 2793, 4502, 4865, 5289, 5597 |
| SmoI | CTYRAG | 5 cut(s) | 2793, 4502, 4865, 5289, 5597 |
| SpeI | ACTAGT | 2 cut(s) | 1979, 3163 |
| SphI | GCATGC | 2 cut(s) | 1127, 4180 |
| SseBI | AGGCCT | 2 cut(s) | 2098, 4163 |
| SspI | AATATT | 3 cut(s) | 1549, 3767, 5066 |
| StuI | AGGCCT | 2 cut(s) | 2098, 4163 |
| StyI | CCWWGG | 5 cut(s) | 2296, 3451, 4089, 4215, 6496 |
| TaiI | ACGT | 7 cut(s) | 8, 71, 2053, 2124, 3184, 3237, 3708 |
| TatI | WGTACW | 4 cut(s) | 63, 2829, 4340, 5638 |
| TauI | GCSGC | 8 cut(s) | 27, 347, 397, 414, 419, 3145, 4906, 6349 |
| TspGWI | ACGGA | 4 cut(s) | 317, 1298, 3014, 3965 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2357 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1615 |
| VneI | GTGCAC | 1 cut(s) | 1027 |
| VpaK11BI | GGWCC | 9 cut(s) | 732, 1928, 2359, 2544, 3961, 5791, 6205, 6221, 6242 |
| VspI | ATTAAT | 1 cut(s) | 5786 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 3505, 4203 |
| XapI | RAATTY | 8 cut(s) | 460, 976, 1159, 1902, 2334, 3122, 3493, 3825 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 79, 5990 |
| XmiI | GTMKAC | 3 cut(s) | 159, 1312, 6027 |
| XmnI | GAANNNNTTC | 7 cut(s) | 1386, 2337, 2769, 3183, 3750, 5085, 6057 |
| ZraI | GACGTC | 1 cut(s) | 6 |
| ZrmI | AGTACT | 1 cut(s) | 4342 |
| Zsp2I | ATGCAT | 1 cut(s) | 4490 |