Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000802

Physical Location & Seq

Genomic Coordinates Reverse (-)

47219696 .. 47220567

Gene Structure 872 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00426480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGCGACCTGGAGAGGAAGAGGTGATTCGAAGGTTGATTAACCACCAGAGATTTTCCTTTGAGAATCCCGACTGCACAGATCCTCACGTCAAAACATATGCTCTTCTCCAGGCTCATTTTGCAAGGCATCATGTGGTTGGGAAATGGGAACCTATCATTGGACCAGCATGGTCAGTCAGGGGATGTGGGATCGTGACTCGATGCTTCTACGTACAGCTTCCTCACTTCACAAGGGAGCTGGCGAAGAGATGCCAAGAATTTCCTGGAAAGAATATAGAGAGGGTATCTGATTTGGTTGACATGGAGTATGATGACAGGCGTGAACTACTTCAGATGTCAGATGTACAGTTGGAGGATATTGAACAATTTTGCAAACGATTTCCCAACATTGAAATGACATTTAAGGTGCTGGAGAGTGAGAATGTAAGAGCTGGGGAGGAAATCAGTTTGCAAGTTGATATGGACCGTGAACATGTTGGCCCTGTTGATGCGCCGAGATATCCCAGGACCAAAGAAGAGGGGTGGTGGCTAGTTGTCGGGGATACCAAGACTAACTCACTGCTTGCAATCAAGAAAGTTCCCCTACTAAAGAAGTCGAAGATCCAGCTTAGATTTTCGGCTCCTGCAGAAGCTGGAAAGAAGACATATACACTGTATTTCATGTGTGATTCATATTTGGGGTGTGATGAGGAACATAACTTCACTGTCGATGTTAAAGAACCAGCAAGCCCTGATGAAGAAGGTGAAGACACTGAAATGAGAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000354 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005911 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009506 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0022613 GO:0022618 GO:0030054 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0042623 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0046540 GO:0055044 GO:0065003 GO:0070013 GO:0070035 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097525 GO:0097526 GO:0120114 GO:0140098 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD Helicase_C Sec63

Protein Analysis

255

Amino Acids

29.61

Weight (kDa)

5.39

Isoelectric Point (pI)

49.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec63	PF02889	107 - 234	1.3e-19	Sec63 Brl domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20960 AT1G20960 AT2G42270
fragaria_vesca	FvH4_5g21940 FvH4_5g30070 FvH4_6g00860 FvH4_6g00860 FvH4_6g47200
malus_domestica	MD04G1240400.v1.1 MD09G1062900.v1.1 MD09G1063000.v1.1 MD12G1257300.v1.1
prunus_persica	Prupe.6G358100_v2.0.a1 Prupe.6G358100_v2.0.a1
pyrus_communis	pycom04g21210 pycom04g21230 pycom111g05330 pycom12g23600 pycom12g23620
rosa_chinensis	RchiOBHm_Chr2g0166221 RchiOBHm_Chr3g0448041 RchiOBHm_Chr3g0448351 RchiOBHm_Chr5g0014801 RchiOBHm_Chr7g0209461
rosa_laevigata	RLG00000003133 RLG00000021598 RLG00000021599 RLG00000025925 RLG00000025950 RLG00000025953 RLG00000032142
rosa_multiflora	Rmu_co8520521.1_g000001 Rmu_sc0005582.1_g000009 Rmu_sc0005969.1_g000018 Rmu_sc0015167.1_g000007 Rmu_ssc0000323.1_g000031
rosa_roxburghii	Rroxscaffold_1G00061750 Rroxscaffold_2G00085080 Rroxscaffold_3G00249430 Rroxscaffold_6G00426200 Rroxscaffold_6G00426480 Rroxscaffold_6G00426530
rosa_rugosa	Rorug02G0521300 Rorug02G0607900 Rorug02G0611500 Rorug02G0611600 Rorug07G0113200
rosa_samantha	Rh2AG587300 Rh2BG599200 Rh2CG569600 Rh2DG608900 Rh3AG010500 Rh3AG010600 Rh3BG010200 Rh3BG010300 Rh3CG009900 Rh3CG010000 Rh3DG010600 Rh3DG010700 Rh5CG124900 Rh7AG247100 Rh7BG242100 Rh7CG262700 Rh7DG253400
rosa_wichuraiana	Rw0G020040 Rw2G048960 Rw3G000580 Rw3G000830 Rw7G020900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	74, 197, 595
AcsI	RAATTY	1 cut(s)	257
AcuI	CTGAAG	1 cut(s)	314
AfaI	GTAC	2 cut(s)	213, 345
AfiI	CCNNNNNNNGG	1 cut(s)	158
AflIII	ACRYGT	1 cut(s)	472
AgsI	TTSAA	2 cut(s)	362, 392
AjiI	CACGTC	1 cut(s)	88
AjnI	CCWGG	4 cut(s)	7, 108, 262, 503
AjuI	GAANNNNNNNTTGG	2 cut(s)	141, 173
AluBI	AGCT	5 cut(s)	217, 238, 431, 607, 632
AluI	AGCT	5 cut(s)	217, 238, 431, 607, 632
AlwI	GGATC	3 cut(s)	74, 197, 595
AlwNI	CAGNNNCTG	1 cut(s)	632
AoxI	GGCC	1 cut(s)	478
ApoI	RAATTY	1 cut(s)	257
Asp700I	GAANNNNTTC	1 cut(s)	327
AspLEI	GCGC	1 cut(s)	493
AspS9I	GGNCC	4 cut(s)	161, 463, 479, 507
AsuHPI	GGTGA	2 cut(s)	34, 755
AsuII	TTCGAA	1 cut(s)	28
AvaII	GGWCC	3 cut(s)	161, 463, 507
BbsI	GAAGAC	2 cut(s)	647, 753
BciT130I	CCWGG	4 cut(s)	9, 110, 264, 505
BciVI	GTATCC	1 cut(s)	535
BfaI	CTAG	1 cut(s)	530
BfmI	CTRYAG	1 cut(s)	624
BfuI	GTATCC	1 cut(s)	535
Bme1390I	CCNGG	4 cut(s)	9, 110, 264, 505
Bme18I	GGWCC	3 cut(s)	161, 463, 507
BmgBI	CACGTC	1 cut(s)	88
BmgT120I	GGNCC	4 cut(s)	161, 463, 479, 507
BmiI	GGNNCC	2 cut(s)	150, 621
BmrFI	CCNGG	4 cut(s)	9, 110, 264, 505
BmsI	GCATC	4 cut(s)	136, 191, 239, 478
BpiI	GAAGAC	2 cut(s)	647, 753
BpmI	CTGGAG	3 cut(s)	30, 92, 431
Bpu14I	TTCGAA	1 cut(s)	28
BsaAI	YACGTR	1 cut(s)	211
BsaJI	CCNNGG	1 cut(s)	503
Bsc4I	CCNNNNNNNGG	1 cut(s)	158
BseBI	CCWGG	4 cut(s)	9, 110, 264, 505
BseDI	CCNNGG	1 cut(s)	503
BseGI	GGATG	1 cut(s)	188
BseLI	CCNNNNNNNGG	1 cut(s)	158
BseYI	CCCAGC	1 cut(s)	431
BsgI	GTGCAG	1 cut(s)	58
BshFI	GGCC	1 cut(s)	480
BslI	CCNNNNNNNGG	1 cut(s)	158
BsnI	GGCC	1 cut(s)	480
Bsp119I	TTCGAA	1 cut(s)	28
Bsp1407I	TGTACA	1 cut(s)	343
Bsp143I	GATC	3 cut(s)	79, 189, 600
BspANI	GGCC	1 cut(s)	480
BspLI	GGNNCC	2 cut(s)	150, 621
BspMAI	CTGCAG	1 cut(s)	628
BspPI	GGATC	3 cut(s)	74, 197, 595
BspQI	GCTCTTC	1 cut(s)	108
BspT104I	TTCGAA	1 cut(s)	28
BsrGI	TGTACA	1 cut(s)	343
BssECI	CCNNGG	1 cut(s)	503
BssMI	GATC	3 cut(s)	79, 189, 600
Bst2UI	CCWGG	4 cut(s)	9, 110, 264, 505
Bst4CI	ACNGT	4 cut(s)	348, 467, 654, 706
Bst6I	CTCTTC	4 cut(s)	12, 108, 239, 510
BstAUI	TGTACA	1 cut(s)	343
BstBAI	YACGTR	1 cut(s)	211
BstBI	TTCGAA	1 cut(s)	28
BstC8I	GCNNGC	3 cut(s)	240, 564, 727
BstDEI	CTNAG	1 cut(s)	608
BstF5I	GGATG	1 cut(s)	188
BstHHI	GCGC	1 cut(s)	493
BstKTI	GATC	3 cut(s)	82, 192, 603
BstMBI	GATC	3 cut(s)	79, 189, 600
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstNI	CCWGG	4 cut(s)	9, 110, 264, 505
BstNSI	RCATGY	1 cut(s)	476
BstSCI	CCNGG	4 cut(s)	7, 108, 262, 503
BstSFI	CTRYAG	1 cut(s)	624
BstSNI	TACGTA	1 cut(s)	211
BstV2I	GAAGAC	2 cut(s)	647, 753
BstX2I	RGATCY	2 cut(s)	79, 600
BstYI	RGATCY	2 cut(s)	79, 600
BsuI	GTATCC	1 cut(s)	535
BsuRI	GGCC	1 cut(s)	480
BtrI	CACGTC	1 cut(s)	88
BtsCI	GGATG	1 cut(s)	188
BtsI	GCAGTG	1 cut(s)	557
BtsIMutI	CAGTG	4 cut(s)	557, 650, 702, 750
Cac8I	GCNNGC	3 cut(s)	240, 564, 727
CaiI	CAGNNNCTG	1 cut(s)	632
CfoI	GCGC	1 cut(s)	493
Cfr13I	GGNCC	4 cut(s)	161, 463, 479, 507
Csp6I	GTAC	2 cut(s)	212, 344
CviAII	CATG	5 cut(s)	131, 168, 301, 473, 661
CviQI	GTAC	2 cut(s)	212, 344
DdeI	CTNAG	1 cut(s)	608
DpnI	GATC	3 cut(s)	81, 191, 602
DpnII	GATC	3 cut(s)	79, 189, 600
Eam1104I	CTCTTC	4 cut(s)	12, 108, 239, 510
EarI	CTCTTC	4 cut(s)	12, 108, 239, 510
Eco105I	TACGTA	1 cut(s)	211
Eco32I	GATATC	1 cut(s)	500
Eco47I	GGWCC	3 cut(s)	161, 463, 507
Eco57I	CTGAAG	1 cut(s)	314
EcoRII	CCWGG	4 cut(s)	7, 108, 262, 503
EcoRV	GATATC	1 cut(s)	500
FaeI	CATG	5 cut(s)	134, 171, 304, 476, 664
FatI	CATG	5 cut(s)	130, 167, 300, 472, 660
FauNDI	CATATG	1 cut(s)	97
FokI	GGATG	1 cut(s)	195
FspBI	CTAG	1 cut(s)	530
GlaI	GCGC	1 cut(s)	492
GsaI	CCCAGC	1 cut(s)	435
GsuI	CTGGAG	3 cut(s)	30, 92, 431
HaeIII	GGCC	1 cut(s)	480
HhaI	GCGC	1 cut(s)	493
Hin1II	CATG	5 cut(s)	134, 171, 304, 476, 664
Hin6I	GCGC	1 cut(s)	491
HinP1I	GCGC	1 cut(s)	491
HincII	GTYRAC	1 cut(s)	298
HindII	GTYRAC	1 cut(s)	298
HinfI	GANTC	4 cut(s)	25, 64, 196, 668
HphI	GGTGA	2 cut(s)	34, 755
Hpy166II	GTNNAC	3 cut(s)	298, 323, 470
Hpy188I	TCNGA	3 cut(s)	289, 333, 340
Hpy188III	TCNNGA	3 cut(s)	68, 193, 571
Hpy8I	GTNNAC	3 cut(s)	298, 323, 470
HpyAV	CCTTC	2 cut(s)	24, 734
HpyCH4III	ACNGT	4 cut(s)	348, 467, 654, 706
HpyCH4IV	ACGT	2 cut(s)	87, 210
HpyCH4V	TGCA	6 cut(s)	75, 122, 372, 451, 566, 626
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpyF3I	CTNAG	1 cut(s)	608
HpySE526I	ACGT	2 cut(s)	87, 210
Hsp92II	CATG	5 cut(s)	134, 171, 304, 476, 664
HspAI	GCGC	1 cut(s)	491
Kzo9I	GATC	3 cut(s)	79, 189, 600
LguI	GCTCTTC	1 cut(s)	108
LmnI	GCTCC	2 cut(s)	235, 625
LweI	GCATC	4 cut(s)	136, 191, 239, 478
MaeI	CTAG	1 cut(s)	530
MaeII	ACGT	2 cut(s)	87, 210
MaeIII	GTNAC	1 cut(s)	193
MalI	GATC	3 cut(s)	81, 191, 602
MboI	GATC	3 cut(s)	79, 189, 600
MboII	GAAGA	8 cut(s)	29, 95, 256, 527, 610, 652, 749, 758
MflI	RGATCY	2 cut(s)	79, 600
MluCI	AATT	2 cut(s)	257, 365
MlyI	GAGTC	1 cut(s)	190
MmeI	TCCRAC	1 cut(s)	330
MroXI	GAANNNNTTC	1 cut(s)	327
MseI	TTAA	3 cut(s)	39, 402, 714
MslI	CAYNNNNRTG	2 cut(s)	392, 755
MspR9I	CCNGG	4 cut(s)	9, 110, 264, 505
MvaI	CCWGG	4 cut(s)	9, 110, 264, 505
MwoI	GCNNNNNNNGC	1 cut(s)	119
NdeI	CATATG	1 cut(s)	97
NdeII	GATC	3 cut(s)	79, 189, 600
NlaIII	CATG	5 cut(s)	134, 171, 304, 476, 664
NlaIV	GGNNCC	2 cut(s)	150, 621
NmeAIII	GCCGAG	1 cut(s)	519
NmuCI	GTSAC	1 cut(s)	193
NspI	RCATGY	1 cut(s)	476
NspV	TTCGAA	1 cut(s)	28
PciI	ACATGT	1 cut(s)	472
PciSI	GCTCTTC	1 cut(s)	108
PdmI	GAANNNNTTC	1 cut(s)	327
PfeI	GAWTC	3 cut(s)	25, 64, 668
PfoI	TCCNGGA	1 cut(s)	262
PleI	GAGTC	1 cut(s)	190
PpsI	GAGTC	1 cut(s)	190
Ppu21I	YACGTR	1 cut(s)	211
PscI	ACATGT	1 cut(s)	472
Psp6I	CCWGG	4 cut(s)	7, 108, 262, 503
PspFI	CCCAGC	1 cut(s)	431
PspGI	CCWGG	4 cut(s)	7, 108, 262, 503
PspN4I	GGNNCC	2 cut(s)	150, 621
PspPI	GGNCC	4 cut(s)	161, 463, 479, 507
PstI	CTGCAG	1 cut(s)	628
PstNI	CAGNNNCTG	1 cut(s)	632
PsuI	RGATCY	2 cut(s)	79, 600
RsaI	GTAC	2 cut(s)	213, 345
RsaNI	GTAC	2 cut(s)	212, 344
RseI	CAYNNNNRTG	2 cut(s)	392, 755
SapI	GCTCTTC	1 cut(s)	108
SaqAI	TTAA	3 cut(s)	39, 402, 714
Sau3AI	GATC	3 cut(s)	79, 189, 600
Sau96I	GGNCC	4 cut(s)	161, 463, 479, 507
SchI	GAGTC	1 cut(s)	190
ScrFI	CCNGG	4 cut(s)	9, 110, 264, 505
SfaNI	GCATC	4 cut(s)	136, 191, 239, 478
SfcI	CTRYAG	1 cut(s)	624
SfuI	TTCGAA	1 cut(s)	28
SinI	GGWCC	3 cut(s)	161, 463, 507
SmiMI	CAYNNNNRTG	2 cut(s)	392, 755
SnaBI	TACGTA	1 cut(s)	211
Sse9I	AATT	2 cut(s)	257, 365
SspMI	CTAG	1 cut(s)	530
StyD4I	CCNGG	4 cut(s)	7, 108, 262, 503
TaaI	ACNGT	4 cut(s)	348, 467, 654, 706
TaiI	ACGT	2 cut(s)	90, 213
TaqI	TCGA	4 cut(s)	28, 199, 596, 708
TasI	AATT	2 cut(s)	257, 365
TatI	WGTACW	1 cut(s)	343
TfiI	GAWTC	3 cut(s)	25, 64, 668
Tru1I	TTAA	3 cut(s)	39, 402, 714
Tru9I	TTAA	3 cut(s)	39, 402, 714
TscAI	CASTG	4 cut(s)	564, 657, 709, 757
TseFI	GTSAC	1 cut(s)	193
Tsp45I	GTSAC	1 cut(s)	193
TspDTI	ATGAA	3 cut(s)	649, 660, 750
TspRI	CASTG	4 cut(s)	564, 657, 709, 757
VpaK11BI	GGWCC	3 cut(s)	161, 463, 507
XapI	RAATTY	1 cut(s)	257
XceI	RCATGY	1 cut(s)	476
XcmI	CCANNNNNNNNNTGG	1 cut(s)	260
XmnI	GAANNNNTTC	1 cut(s)	327
XspI	CTAG	1 cut(s)	530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.