U5 small nuclear ribonucleoprotein 200 kDa
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| ResIII | PF04851 | 134 - 311 | 1.8e-13 | Type III restriction enzyme, res subunit |
| DEAD | PF00270 | 137 - 315 | 6.5e-33 | DEAD/DEAH box helicase |
| Helicase_C | PF00271 | 415 - 513 | 2.5e-10 | Helicase conserved C-terminal domain |
| WHD_SNRNP200 | PF23445 | 544 - 620 | 1.2e-21 | Winged Helix-turn-helix domain |
| Sec63 | PF02889 | 636 - 939 | 1.6e-96 | Sec63 Brl domain |
| ResIII | PF04851 | 982 - 1127 | 1.9e-09 | Type III restriction enzyme, res subunit |
| DEAD | PF00270 | 985 - 1158 | 6.4e-25 | DEAD/DEAH box helicase |
| WHD_SNRNP200 | PF23445 | 1392 - 1441 | 1.6e-17 | Winged Helix-turn-helix domain |
| Sec63 | PF02889 | 1447 - 1766 | 2.8e-57 | Sec63 Brl domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 5162, 5247 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 653, 5153 |
| Acc36I | ACCTGC | 1 cut(s) | 2848 |
| Acc65I | GGTACC | 1 cut(s) | 5091 |
| AccB1I | GGYRCC | 4 cut(s) | 232, 2229, 2731, 5091 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 3949, 4707 |
| AccI | GTMKAC | 2 cut(s) | 3418, 4382 |
| AccII | CGCG | 2 cut(s) | 2091, 4076 |
| AclI | AACGTT | 1 cut(s) | 3192 |
| AclWI | GGATC | 8 cut(s) | 186, 1365, 1460, 1825, 3858, 4338, 4501, 4747 |
| AcoI | YGGCCR | 2 cut(s) | 1576, 4929 |
| AcsI | RAATTY | 6 cut(s) | 813, 2030, 2561, 3167, 3718, 5015 |
| AcuI | CTGAAG | 7 cut(s) | 500, 633, 2192, 2298, 3108, 4574, 4889 |
| AcyI | GRCGYC | 2 cut(s) | 950, 2230 |
| AdeI | CACNNNGTG | 1 cut(s) | 1438 |
| AflIII | ACRYGT | 2 cut(s) | 1734, 3679 |
| AjiI | CACGTC | 1 cut(s) | 5083 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1665, 1697, 2331, 2363 |
| Alw21I | GWGCWC | 5 cut(s) | 472, 507, 2245, 2571, 3080 |
| Alw26I | GTCTC | 9 cut(s) | 704, 730, 878, 2795, 3185, 3377, 3397, 3397, 4910 |
| AlwI | GGATC | 8 cut(s) | 186, 1365, 1460, 1825, 3858, 4338, 4501, 4747 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 4750, 5228 |
| Ama87I | CYCGRG | 2 cut(s) | 3236, 5036 |
| AoxI | GGCC | 5 cut(s) | 838, 1576, 4593, 4929, 5004 |
| ApoI | RAATTY | 6 cut(s) | 813, 2030, 2561, 3167, 3718, 5015 |
| AseI | ATTAAT | 1 cut(s) | 2139 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 1245, 1677, 2457, 2748, 4953 |
| Asp718I | GGTACC | 1 cut(s) | 5091 |
| AspLEI | GCGC | 3 cut(s) | 592, 2232, 4078 |
| AsuC2I | CCSGG | 2 cut(s) | 842, 5008 |
| AvaI | CYCGRG | 2 cut(s) | 3236, 5036 |
| AvaII | GGWCC | 8 cut(s) | 14, 1452, 2086, 2497, 2796, 2827, 3475, 4636 |
| BalI | TGGCCA | 2 cut(s) | 1578, 4931 |
| BanI | GGYRCC | 4 cut(s) | 232, 2229, 2731, 5091 |
| BanII | GRGCYC | 3 cut(s) | 2127, 2245, 2571 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 4091, 4123 |
| BbsI | GAAGAC | 6 cut(s) | 1230, 1540, 2962, 3038, 4430, 5115 |
| Bbv12I | GWGCWC | 5 cut(s) | 472, 507, 2245, 2571, 3080 |
| BbvCI | CCTCAGC | 1 cut(s) | 4167 |
| BceAI | ACGGC | 2 cut(s) | 3916, 5253 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 185, 219, 2111, 2145 |
| BciVI | GTATCC | 1 cut(s) | 1886 |
| BclI | TGATCA | 3 cut(s) | 1657, 2929, 4252 |
| BcnI | CCSGG | 2 cut(s) | 842, 5008 |
| BcoDI | GTCTC | 9 cut(s) | 704, 730, 878, 2795, 3185, 3377, 3397, 3397, 4910 |
| BfaI | CTAG | 9 cut(s) | 60, 318, 350, 1701, 2447, 3396, 4451, 4605, 4727 |
| BfmI | CTRYAG | 6 cut(s) | 1104, 4093, 4278, 4442, 4787, 5220 |
| BfoI | RGCGCY | 1 cut(s) | 2233 |
| BfuAI | ACCTGC | 1 cut(s) | 2848 |
| BfuI | GTATCC | 1 cut(s) | 1886 |
| BglII | AGATCT | 1 cut(s) | 2935 |
| Bme18I | GGWCC | 8 cut(s) | 14, 1452, 2086, 2497, 2796, 2827, 3475, 4636 |
| BmeT110I | CYCGRG | 2 cut(s) | 3236, 5036 |
| BmgBI | CACGTC | 1 cut(s) | 5083 |
| BmiI | GGNNCC | 9 cut(s) | 15, 234, 1453, 2231, 2622, 2733, 2828, 3964, 5093 |
| BmrI | ACTGGG | 6 cut(s) | 486, 2121, 3216, 3961, 5059, 5195 |
| BmsI | GCATC | 9 cut(s) | 2204, 3118, 3128, 3487, 4323, 4737, 4814, 4903, 5270 |
| BmuI | ACTGGG | 6 cut(s) | 486, 2121, 3216, 3961, 5059, 5195 |
| BoxI | GACNNNNGTC | 3 cut(s) | 1914, 2966, 3389 |
| BpiI | GAAGAC | 6 cut(s) | 1230, 1540, 2962, 3038, 4430, 5115 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 3165, 3197 |
| BpmI | CTGGAG | 4 cut(s) | 3249, 3504, 4208, 5006 |
| Bpu10I | CCTNAGC | 2 cut(s) | 2792, 4167 |
| BpuEI | CTTGAG | 3 cut(s) | 1126, 4246, 4440 |
| BpuMI | CCSGG | 2 cut(s) | 842, 5008 |
| Bsa29I | ATCGAT | 1 cut(s) | 3883 |
| BsaBI | GATNNNNATC | 4 cut(s) | 2709, 2934, 4335, 4751 |
| BsaHI | GRCGYC | 2 cut(s) | 950, 2230 |
| BsaI | GGTCTC | 2 cut(s) | 878, 3185 |
| BsaWI | WCCGGW | 1 cut(s) | 2581 |
| Bse118I | RCCGGY | 1 cut(s) | 304 |
| Bse3DI | GCAATG | 5 cut(s) | 201, 1282, 1920, 3114, 4686 |
| Bse8I | GATNNNNATC | 4 cut(s) | 2709, 2934, 4335, 4751 |
| BseCI | ATCGAT | 1 cut(s) | 3883 |
| BseGI | GGATG | 9 cut(s) | 2062, 2276, 2331, 2710, 3346, 3594, 4327, 4888, 5285 |
| BseJI | GATNNNNATC | 4 cut(s) | 2709, 2934, 4335, 4751 |
| BseMI | GCAATG | 5 cut(s) | 201, 1282, 1920, 3114, 4686 |
| BseRI | GAGGAG | 2 cut(s) | 53, 1826 |
| BseYI | CCCAGC | 2 cut(s) | 128, 3842 |
| BsgI | GTGCAG | 6 cut(s) | 515, 1170, 1548, 2244, 2997, 3063 |
| Bsh1236I | CGCG | 2 cut(s) | 2091, 4076 |
| BshFI | GGCC | 5 cut(s) | 840, 1578, 4595, 4931, 5006 |
| BshNI | GGYRCC | 4 cut(s) | 232, 2229, 2731, 5091 |
| BshVI | ATCGAT | 1 cut(s) | 3883 |
| BsiHKAI | GWGCWC | 5 cut(s) | 472, 507, 2245, 2571, 3080 |
| BsiHKCI | CYCGRG | 2 cut(s) | 3236, 5036 |
| BsiSI | CCGG | 4 cut(s) | 305, 842, 2582, 5007 |
| BslFI | GGGAC | 5 cut(s) | 758, 1465, 2006, 2840, 3290 |
| BsmAI | GTCTC | 9 cut(s) | 704, 730, 878, 2795, 3185, 3377, 3397, 3397, 4910 |
| BsmBI | CGTCTC | 2 cut(s) | 730, 4910 |
| BsmFI | GGGAC | 5 cut(s) | 758, 1465, 2006, 2840, 3290 |
| BsmI | GAATGC | 3 cut(s) | 1672, 1702, 4115 |
| BsnI | GGCC | 5 cut(s) | 840, 1578, 4595, 4931, 5006 |
| Bso31I | GGTCTC | 2 cut(s) | 878, 3185 |
| BsoBI | CYCGRG | 2 cut(s) | 3236, 5036 |
| Bsp1286I | GDGCHC | 6 cut(s) | 472, 507, 2127, 2245, 2571, 3080 |
| Bsp1407I | TGTACA | 3 cut(s) | 1135, 1378, 3111 |
| Bsp19I | CCATGG | 1 cut(s) | 3219 |
| BspANI | GGCC | 5 cut(s) | 840, 1578, 4595, 4931, 5006 |
| BspDI | ATCGAT | 1 cut(s) | 3883 |
| BspFNI | CGCG | 2 cut(s) | 2091, 4076 |
| BspHI | TCATGA | 1 cut(s) | 4567 |
| BspLI | GGNNCC | 9 cut(s) | 15, 234, 1453, 2231, 2622, 2733, 2828, 3964, 5093 |
| BspMAI | CTGCAG | 2 cut(s) | 4446, 5224 |
| BspMI | ACCTGC | 1 cut(s) | 2848 |
| BspPI | GGATC | 8 cut(s) | 186, 1365, 1460, 1825, 3858, 4338, 4501, 4747 |
| BspQI | GCTCTTC | 2 cut(s) | 3068, 4728 |
| BspT107I | GGYRCC | 4 cut(s) | 232, 2229, 2731, 5091 |
| BspTNI | GGTCTC | 2 cut(s) | 878, 3185 |
| BsrDI | GCAATG | 5 cut(s) | 201, 1282, 1920, 3114, 4686 |
| BsrFI | RCCGGY | 1 cut(s) | 304 |
| BsrGI | TGTACA | 3 cut(s) | 1135, 1378, 3111 |
| BssAI | RCCGGY | 1 cut(s) | 304 |
| BssNAI | GTATAC | 1 cut(s) | 4383 |
| BssNI | GRCGYC | 2 cut(s) | 950, 2230 |
| BssT1I | CCWWGG | 4 cut(s) | 1204, 3219, 3478, 4348 |
| Bst1107I | GTATAC | 1 cut(s) | 4383 |
| Bst6I | CTCTTC | 7 cut(s) | 702, 2440, 2754, 3068, 4494, 4728, 5081 |
| BstACI | GRCGYC | 2 cut(s) | 950, 2230 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 1406, 3050, 4648 |
| BstAUI | TGTACA | 3 cut(s) | 1135, 1378, 3111 |
| BstC8I | GCNNGC | 8 cut(s) | 306, 1407, 1428, 1748, 1821, 2154, 3502, 4629 |
| BstDSI | CCRYGG | 2 cut(s) | 562, 3219 |
| BstEII | GGTNACC | 1 cut(s) | 677 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2416 |
| BstF5I | GGATG | 9 cut(s) | 2062, 2276, 2331, 2710, 3346, 3594, 4327, 4888, 5285 |
| BstFNI | CGCG | 2 cut(s) | 2091, 4076 |
| BstH2I | RGCGCY | 1 cut(s) | 2233 |
| BstHHI | GCGC | 3 cut(s) | 592, 2232, 4078 |
| BstMAI | GTCTC | 9 cut(s) | 704, 730, 878, 2795, 3185, 3377, 3397, 3397, 4910 |
| BstNSI | RCATGY | 7 cut(s) | 902, 1379, 1738, 1750, 3615, 3635, 3683 |
| BstPAI | GACNNNNGTC | 3 cut(s) | 1914, 2966, 3389 |
| BstPI | GGTNACC | 1 cut(s) | 677 |
| BstSFI | CTRYAG | 6 cut(s) | 1104, 4093, 4278, 4442, 4787, 5220 |
| BstUI | CGCG | 2 cut(s) | 2091, 4076 |
| BstV2I | GAAGAC | 6 cut(s) | 1230, 1540, 2962, 3038, 4430, 5115 |
| BstX2I | RGATCY | 3 cut(s) | 1357, 2935, 4330 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 2360, 3273 |
| BstYI | RGATCY | 3 cut(s) | 1357, 2935, 4330 |
| BstZ17I | GTATAC | 1 cut(s) | 4383 |
| Bsu15I | ATCGAT | 1 cut(s) | 3883 |
| BsuI | GTATCC | 1 cut(s) | 1886 |
| BsuRI | GGCC | 5 cut(s) | 840, 1578, 4595, 4931, 5006 |
| BsuTUI | ATCGAT | 1 cut(s) | 3883 |
| BtgI | CCRYGG | 2 cut(s) | 562, 3219 |
| BtrI | CACGTC | 1 cut(s) | 5083 |
| BtsCI | GGATG | 9 cut(s) | 2062, 2276, 2331, 2710, 3346, 3594, 4327, 4888, 5285 |
| BtsI | GCAGTG | 5 cut(s) | 507, 1258, 1395, 2973, 3615 |
| BveI | ACCTGC | 1 cut(s) | 2848 |
| Cac8I | GCNNGC | 8 cut(s) | 306, 1407, 1428, 1748, 1821, 2154, 3502, 4629 |
| CaiI | CAGNNNCTG | 2 cut(s) | 4750, 5228 |
| CciI | TCATGA | 1 cut(s) | 4567 |
| CfoI | GCGC | 3 cut(s) | 592, 2232, 4078 |
| Cfr10I | RCCGGY | 1 cut(s) | 304 |
| ClaI | ATCGAT | 1 cut(s) | 3883 |
| CseI | GACGC | 3 cut(s) | 939, 3518, 4207 |
| DinI | GGCGCC | 1 cut(s) | 2231 |
| DraI | TTTAAA | 2 cut(s) | 1977, 3877 |
| DraIII | CACNNNGTG | 1 cut(s) | 1438 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 653, 5153 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 653, 5153 |
| EaeI | YGGCCR | 2 cut(s) | 1576, 4929 |
| Eam1104I | CTCTTC | 7 cut(s) | 702, 2440, 2754, 3068, 4494, 4728, 5081 |
| EarI | CTCTTC | 7 cut(s) | 702, 2440, 2754, 3068, 4494, 4728, 5081 |
| EciI | GGCGGA | 2 cut(s) | 893, 3384 |
| Ecl136II | GAGCTC | 2 cut(s) | 2243, 2569 |
| Eco130I | CCWWGG | 4 cut(s) | 1204, 3219, 3478, 4348 |
| Eco24I | GRGCYC | 3 cut(s) | 2127, 2245, 2571 |
| Eco31I | GGTCTC | 2 cut(s) | 878, 3185 |
| Eco32I | GATATC | 1 cut(s) | 4156 |
| Eco47I | GGWCC | 8 cut(s) | 14, 1452, 2086, 2497, 2796, 2827, 3475, 4636 |
| Eco53kI | GAGCTC | 2 cut(s) | 2243, 2569 |
| Eco57I | CTGAAG | 7 cut(s) | 500, 633, 2192, 2298, 3108, 4574, 4889 |
| Eco88I | CYCGRG | 2 cut(s) | 3236, 5036 |
| Eco91I | GGTNACC | 1 cut(s) | 677 |
| EcoICRI | GAGCTC | 2 cut(s) | 2243, 2569 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2416 |
| EcoO109I | RGGNCCY | 3 cut(s) | 14, 2827, 3475 |
| EcoO65I | GGTNACC | 1 cut(s) | 677 |
| EcoRI | GAATTC | 1 cut(s) | 5015 |
| EcoRV | GATATC | 1 cut(s) | 4156 |
| EcoT14I | CCWWGG | 4 cut(s) | 1204, 3219, 3478, 4348 |
| EcoT22I | ATGCAT | 1 cut(s) | 2946 |
| EcoT38I | GRGCYC | 3 cut(s) | 2127, 2245, 2571 |
| EgeI | GGCGCC | 1 cut(s) | 2231 |
| EheI | GGCGCC | 1 cut(s) | 2231 |
| ErhI | CCWWGG | 4 cut(s) | 1204, 3219, 3478, 4348 |
| Esp3I | CGTCTC | 2 cut(s) | 730, 4910 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 3312, 3344 |
| FaqI | GGGAC | 5 cut(s) | 758, 1465, 2006, 2840, 3290 |
| FauI | CCCGC | 2 cut(s) | 1159, 4041 |
| FauNDI | CATATG | 2 cut(s) | 1300, 3038 |
| FbaI | TGATCA | 3 cut(s) | 1657, 2929, 4252 |
| FblI | GTMKAC | 2 cut(s) | 3418, 4382 |
| FokI | GGATG | 9 cut(s) | 2069, 2283, 2338, 2717, 3353, 3601, 4334, 4895, 5292 |
| FriOI | GRGCYC | 3 cut(s) | 2127, 2245, 2571 |
| FspBI | CTAG | 9 cut(s) | 60, 318, 350, 1701, 2447, 3396, 4451, 4605, 4727 |
| GlaI | GCGC | 3 cut(s) | 591, 2231, 4077 |
| GsaI | CCCAGC | 2 cut(s) | 132, 3846 |
| GsuI | CTGGAG | 4 cut(s) | 3249, 3504, 4208, 5006 |
| HaeII | RGCGCY | 1 cut(s) | 2233 |
| HaeIII | GGCC | 5 cut(s) | 840, 1578, 4595, 4931, 5006 |
| HapII | CCGG | 4 cut(s) | 305, 842, 2582, 5007 |
| HgaI | GACGC | 3 cut(s) | 939, 3518, 4207 |
| HhaI | GCGC | 3 cut(s) | 592, 2232, 4078 |
| Hin1I | GRCGYC | 2 cut(s) | 950, 2230 |
| Hin6I | GCGC | 3 cut(s) | 590, 2230, 4076 |
| HinP1I | GCGC | 3 cut(s) | 590, 2230, 4076 |
| HincII | GTYRAC | 5 cut(s) | 139, 1722, 3154, 3419, 5190 |
| HindII | GTYRAC | 5 cut(s) | 139, 1722, 3154, 3419, 5190 |
| HindIII | AAGCTT | 7 cut(s) | 794, 1707, 2174, 3869, 4458, 5141, 5249 |
| HpaI | GTTAAC | 1 cut(s) | 1722 |
| HpaII | CCGG | 4 cut(s) | 305, 842, 2582, 5007 |
| Hpy99I | CGWCG | 1 cut(s) | 5239 |
| HpyCH4IV | ACGT | 3 cut(s) | 3192, 3663, 5082 |
| HpySE526I | ACGT | 3 cut(s) | 3192, 3663, 5082 |
| Hsp92I | GRCGYC | 2 cut(s) | 950, 2230 |
| HspAI | GCGC | 3 cut(s) | 590, 2230, 4076 |
| KasI | GGCGCC | 1 cut(s) | 2229 |
| KpnI | GGTACC | 1 cut(s) | 5095 |
| KroI | GCCGGC | 1 cut(s) | 304 |
| KroNI | GCCGGC | 1 cut(s) | 306 |
| Ksp22I | TGATCA | 3 cut(s) | 1657, 2929, 4252 |
| KspAI | GTTAAC | 1 cut(s) | 1722 |
| LguI | GCTCTTC | 2 cut(s) | 3068, 4728 |
| LmnI | GCTCC | 8 cut(s) | 40, 475, 667, 1478, 2443, 2620, 4624, 5221 |
| LweI | GCATC | 9 cut(s) | 2204, 3118, 3128, 3487, 4323, 4737, 4814, 4903, 5270 |
| MaeI | CTAG | 9 cut(s) | 60, 318, 350, 1701, 2447, 3396, 4451, 4605, 4727 |
| MaeII | ACGT | 3 cut(s) | 3192, 3663, 5082 |
| MfeI | CAATTG | 7 cut(s) | 30, 1661, 2097, 3132, 3621, 4133, 5208 |
| MflI | RGATCY | 3 cut(s) | 1357, 2935, 4330 |
| MhlI | GDGCHC | 6 cut(s) | 472, 507, 2127, 2245, 2571, 3080 |
| MlsI | TGGCCA | 2 cut(s) | 1578, 4931 |
| MluNI | TGGCCA | 2 cut(s) | 1578, 4931 |
| Mly113I | GGCGCC | 1 cut(s) | 2230 |
| MlyI | GAGTC | 7 cut(s) | 367, 391, 685, 706, 2956, 4769, 5141 |
| MmeI | TCCRAC | 3 cut(s) | 601, 1788, 3709 |
| Mox20I | TGGCCA | 2 cut(s) | 1578, 4931 |
| Mph1103I | ATGCAT | 1 cut(s) | 2946 |
| MroNI | GCCGGC | 1 cut(s) | 304 |
| MroXI | GAANNNNTTC | 5 cut(s) | 1245, 1677, 2457, 2748, 4953 |
| MscI | TGGCCA | 2 cut(s) | 1578, 4931 |
| MslI | CAYNNNNRTG | 1 cut(s) | 2613 |
| Msp20I | TGGCCA | 2 cut(s) | 1578, 4931 |
| MspA1I | CMGCKG | 5 cut(s) | 26, 449, 1166, 1230, 2170 |
| MspI | CCGG | 4 cut(s) | 305, 842, 2582, 5007 |
| MunI | CAATTG | 7 cut(s) | 30, 1661, 2097, 3132, 3621, 4133, 5208 |
| Mva1269I | GAATGC | 3 cut(s) | 1672, 1702, 4115 |
| MvnI | CGCG | 2 cut(s) | 2091, 4076 |
| NaeI | GCCGGC | 1 cut(s) | 306 |
| NarI | GGCGCC | 1 cut(s) | 2230 |
| NciI | CCSGG | 2 cut(s) | 842, 5008 |
| NcoI | CCATGG | 1 cut(s) | 3219 |
| NdeI | CATATG | 2 cut(s) | 1300, 3038 |
| NgoMIV | GCCGGC | 1 cut(s) | 304 |
| NlaIV | GGNNCC | 9 cut(s) | 15, 234, 1453, 2231, 2622, 2733, 2828, 3964, 5093 |
| NmeAIII | GCCGAG | 1 cut(s) | 3163 |
| NmuCI | GTSAC | 7 cut(s) | 655, 677, 2890, 3706, 3862, 4070, 4772 |
| NsiI | ATGCAT | 1 cut(s) | 2946 |
| NspI | RCATGY | 7 cut(s) | 902, 1379, 1738, 1750, 3615, 3635, 3683 |
| PaeI | GCATGC | 1 cut(s) | 1750 |
| PaeR7I | CTCGAG | 2 cut(s) | 3236, 5036 |
| PagI | TCATGA | 1 cut(s) | 4567 |
| PciI | ACATGT | 2 cut(s) | 1734, 3679 |
| PciSI | GCTCTTC | 2 cut(s) | 3068, 4728 |
| PctI | GAATGC | 3 cut(s) | 1672, 1702, 4115 |
| PdiI | GCCGGC | 1 cut(s) | 306 |
| PdmI | GAANNNNTTC | 5 cut(s) | 1245, 1677, 2457, 2748, 4953 |
| PflFI | GACNNNGTC | 1 cut(s) | 3728 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 3949, 4707 |
| PfoI | TCCNGGA | 1 cut(s) | 4837 |
| PleI | GAGTC | 7 cut(s) | 367, 391, 685, 706, 2956, 4769, 5141 |
| PluTI | GGCGCC | 1 cut(s) | 2233 |
| PpsI | GAGTC | 7 cut(s) | 367, 391, 685, 706, 2956, 4769, 5141 |
| PpuMI | RGGWCCY | 3 cut(s) | 14, 2827, 3475 |
| PscI | ACATGT | 2 cut(s) | 1734, 3679 |
| PshAI | GACNNNNGTC | 3 cut(s) | 1914, 2966, 3389 |
| PshBI | ATTAAT | 1 cut(s) | 2139 |
| PsiI | TTATAA | 2 cut(s) | 5162, 5247 |
| Psp124BI | GAGCTC | 2 cut(s) | 2245, 2571 |
| Psp1406I | AACGTT | 1 cut(s) | 3192 |
| Psp5II | RGGWCCY | 3 cut(s) | 14, 2827, 3475 |
| PspEI | GGTNACC | 1 cut(s) | 677 |
| PspFI | CCCAGC | 2 cut(s) | 128, 3842 |
| PspN4I | GGNNCC | 9 cut(s) | 15, 234, 1453, 2231, 2622, 2733, 2828, 3964, 5093 |
| PspPPI | RGGWCCY | 3 cut(s) | 14, 2827, 3475 |
| PspXI | VCTCGAGB | 1 cut(s) | 3236 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 4467, 4499 |
| PstI | CTGCAG | 2 cut(s) | 4446, 5224 |
| PstNI | CAGNNNCTG | 2 cut(s) | 4750, 5228 |
| PsuI | RGATCY | 3 cut(s) | 1357, 2935, 4330 |
| PsyI | GACNNNGTC | 1 cut(s) | 3728 |
| PvuII | CAGCTG | 2 cut(s) | 26, 2170 |
| RseI | CAYNNNNRTG | 1 cut(s) | 2613 |
| SacI | GAGCTC | 2 cut(s) | 2245, 2571 |
| SalI | GTCGAC | 1 cut(s) | 3417 |
| SapI | GCTCTTC | 2 cut(s) | 3068, 4728 |
| SchI | GAGTC | 7 cut(s) | 367, 391, 685, 706, 2956, 4769, 5141 |
| SduI | GDGCHC | 6 cut(s) | 472, 507, 2127, 2245, 2571, 3080 |
| SfaNI | GCATC | 9 cut(s) | 2204, 3118, 3128, 3487, 4323, 4737, 4814, 4903, 5270 |
| SfcI | CTRYAG | 6 cut(s) | 1104, 4093, 4278, 4442, 4787, 5220 |
| SfoI | GGCGCC | 1 cut(s) | 2231 |
| Sfr274I | CTCGAG | 2 cut(s) | 3236, 5036 |
| SinI | GGWCC | 8 cut(s) | 14, 1452, 2086, 2497, 2796, 2827, 3475, 4636 |
| SlaI | CTCGAG | 2 cut(s) | 3236, 5036 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 2613 |
| SmlI | CTYRAG | 5 cut(s) | 1141, 3236, 4261, 4455, 5036 |
| SmoI | CTYRAG | 5 cut(s) | 1141, 3236, 4261, 4455, 5036 |
| SphI | GCATGC | 1 cut(s) | 1750 |
| SspDI | GGCGCC | 1 cut(s) | 2229 |
| SspI | AATATT | 3 cut(s) | 457, 2678, 2762 |
| SspMI | CTAG | 9 cut(s) | 60, 318, 350, 1701, 2447, 3396, 4451, 4605, 4727 |
| SstI | GAGCTC | 2 cut(s) | 2245, 2571 |
| StyI | CCWWGG | 4 cut(s) | 1204, 3219, 3478, 4348 |
| TaiI | ACGT | 3 cut(s) | 3195, 3666, 5085 |
| TaqII | GACCGA | 1 cut(s) | 1469 |
| TatI | WGTACW | 4 cut(s) | 570, 1135, 1378, 3111 |
| TauI | GCSGC | 1 cut(s) | 2053 |
| TseFI | GTSAC | 7 cut(s) | 655, 677, 2890, 3706, 3862, 4070, 4772 |
| Tsp45I | GTSAC | 7 cut(s) | 655, 677, 2890, 3706, 3862, 4070, 4772 |
| TspGWI | ACGGA | 4 cut(s) | 2759, 2898, 3316, 4934 |
| Tth111I | GACNNNGTC | 1 cut(s) | 3728 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 3949, 4707 |
| VpaK11BI | GGWCC | 8 cut(s) | 14, 1452, 2086, 2497, 2796, 2827, 3475, 4636 |
| VspI | ATTAAT | 1 cut(s) | 2139 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2416 |
| XapI | RAATTY | 6 cut(s) | 813, 2030, 2561, 3167, 3718, 5015 |
| XbaI | TCTAGA | 2 cut(s) | 3395, 4604 |
| XceI | RCATGY | 7 cut(s) | 902, 1379, 1738, 1750, 3615, 3635, 3683 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 3356, 3974, 4835 |
| XhoI | CTCGAG | 2 cut(s) | 3236, 5036 |
| XmiI | GTMKAC | 2 cut(s) | 3418, 4382 |
| XmnI | GAANNNNTTC | 5 cut(s) | 1245, 1677, 2457, 2748, 4953 |
| XspI | CTAG | 9 cut(s) | 60, 318, 350, 1701, 2447, 3396, 4451, 4605, 4727 |
| Zsp2I | ATGCAT | 1 cut(s) | 2946 |