Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0000802

Physical Location & Seq

Genomic Coordinates Forward (+)

480424 .. 484845

Gene Structure 4422 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G000580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2736 bp

ATGATGAACCAACAACTTCCTTTCCTATTGACTGACATCAGTCAATTTGTGTCCAGATTGGCAAATAAATTGAATGCTGTCAATTTGTGTTCTTGCCACTGGTTGGGATACACCATCCTACCCGTGTATATTCGCATGTCAAGGAATCCTACGCTCTATATCCATTCTGCTGCAACCATCTTGGAGAAGAACAATTTGATCAAGCATGACACAAAAAGTGGATATTTCCAGGTCACAGACTTGGGTCGCATTGCTAGCCATTGCTACATAACTCATGGGACAATATCGACATATAATGAGCATTTGAAGCCAACTATGGGGGATATTGAACTTTATCAATTGTTCTCCTTCAGTGAAGAGTTCAACTATGTCACTGTGCGGCCGGATGAAAATATGGAACTTGTAAAACTATCGGAATGTGCTCCCATTCCGGTCAAGGAGAGCCTGAAAGATCCCAGTTGCAAGATTAATGTTTTGCTGCAAGCATATATTGCACAGCTGAAATTTGAAGGGTTTTCATTGACACAAGATATGGTTTTGATTACAGGTTTTGCTGGGCGTCTTGTACGAGCTCTTTTCGAGATCGTTTTGAAACGAGGATGGGCTCAACTTGCAGGCAAGGCTTTGAACTTGTGTAAAATGGTTAGCAAGAGGATGTGGAGTGTCCAAATACGTCTTCGCCAATTCCATGGAATAACAAAAGATATCTTGTATTATGACCTCTCTTCAGAGGAGCTGGGGGAGCTTATAAAGATGCCAAAGATGGGAAAAACACTTCATAAGTTCATCCACAAGTTCCCCAAATTAAACCTTGCAGCACATGTGCAGCCAATTACTCGAACTGTACTGAGGGTTGAGCTTACTATAACGCCTGACTTTCAATGGTGGCTTGGGTCAGAGACTGTTTTACCTGTTTCTTTCAGGTACCTCATTGTACCTGAAAAGTATCCTCCACCGACAGAGTTATTGGACCTGCAACCACTTCCTGTGACCACATTAAGGAATCCGCTATATGAAGCTCTGTATCAAGATTTCAAGCAGTTTAATACTGTCCAGACTCAGGTCTTCACTGTTTTGTATAATTCTGATGGCAATGTCTTAGTTGCTGCACCAACAGGGAGTGGGAAGACCATATGTGCAGAGTTTGCTGTATTGAGGGATCATCAGAAGGCCTCTGAAAGTGGCATTGTGTATATTGCCCCTGTTGAAGGTCTTGCCAAGGAATGGCACACTGACTGGCAAAAGAAGTTTGGAATGGGACCAAATTGTCTTAATCTGCGTGTTACTCCAGAGAAATGGGATGCTTTATCTCGTGGATGGAAACAGAGGAAGCATGTACAACAACGACACTTGATTGGTGGTCGGGGTGGTTCCACATTGGAGGTAATAGTCTCTTGGATGAGACGCATCAAGGATGCAAGCACAAAACCAACGAACAGTGCAATTGTTCAACATGCCAAGAATGGAAAACCAGCTCTTGTGTATGTTCCTACTAGGAAACATGTCCAACAAACAGCTCAGGATCTAATGGATTACTCAAATGCAGAGAGGTCAAATGCAAATGGGAACCCCCTCCTTTCTGTTGCGTTGTCAACCCATTTGGTGGTTGTGATGGGAACTCAATATTATGATGGCCGGGAAAATCTTCACACTGATTACCCAATTGCTGATCTCTTGCAGATGATTGGTCATGCCTGTCGGCCTAAGAAAGATAATTCTGGGAAATGTGTCATCCTCTGCCATGCTCCTCGTAAAGAATACTACAAGAAGTTCTTATATGAAGCATTGCCTGTTGAAAAAGTTGTAGCCCAAGTAATCGGGAACCATGAAGGGGCTCTCAATTACCTTGCATGGACATTTTTCTACAGGAGGCTCACACAGAATCCCAACTATTATCTTCAGGGACTTGTTGAAAATACACTGAATGACCTGGAAACAAGCAAATGTGTTGCTGTGGAGGATGGGGATGTTTCTGCCTTGAATCTTGGTATTTCATATTATTGTATGAAGGGTCTTCTTGAGATTCTAGCTCATGCTTCAGGGTATTCGCAACTTTCCATACGACCTGGAGAGGAAGAGGTGATTCGAAGGTTGATTAACCACCATAGATTTTCCTTTGAGAATCCCAACTTCACAGATCCTCACGTCAAAGCAAATGCTCTTCTTCAGGCCCATTTTGCAAGGCATCATGTGGCTGGGGACCTATCATTGGACCAGCTTGAGGTTCTCCTTTCTGCAAGTAGGTTGCTTCACGCAATATTTGATGTCCTTGCCAGCAATGGATGGCTAAACCTTTCTCTCATAGCAATGGAAGTCAGCCAGATGGTGACTCGGGGGATGTGGGATCATGACTTGATGCTACTACAGCTTCCTCACTTCACGATGGAGCTGGCAAAGAGATGCCAAAAGTTTCCTGGAAAGAATATAGAGAGGGTATCTGATATGGTTGACATGGAGTATGATGAAAGGCGGGAACTACTTCAGGAAGTACTTCATATGTCAGATATACAGTTGGAGGATATTGAACAATTTTGCAAACGATTTCCCGACATTGGAATGACATTTAAGGTGCTGGGGAGTGAGAATGTAAGAGCTGGGGAGGAAGTCACTTTGCAAGTTGATATGACTGTGAACAGGACCAAAGAAGAGGGGTGGTGGCTAGTAGTCGGGGACACCAAGACTAACTCACTGCTTGCCATTAAGAGAGTTCGTGTAATGGCCGCAATTTTATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000354 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005911 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009506 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0022613 GO:0022618 GO:0030054 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0042623 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0046540 GO:0055044 GO:0065003 GO:0070013 GO:0070035 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097525 GO:0097526 GO:0120114 GO:0140098 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD Helicase_C Sec63

Protein Analysis

911

Amino Acids

103.82

Weight (kDa)

8.4

Isoelectric Point (pI)

37.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec63	PF02889	79 - 295	4.6e-63	Sec63 Brl domain
DEAD	PF00270	350 - 451	5.6e-12	DEAD/DEAH box helicase
ResIII	PF04851	354 - 418	7.1e-06	Type III restriction enzyme, res subunit
WHD_SNRNP200	PF23445	600 - 654	9.5e-13	Winged Helix-turn-helix domain
Sec63	PF02889	669 - 906	7.3e-40	Sec63 Brl domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0000802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20960 AT1G20960 AT2G42270
fragaria_vesca	FvH4_5g21940 FvH4_5g30070 FvH4_6g00860 FvH4_6g00860 FvH4_6g47200
malus_domestica	MD04G1240400.v1.1 MD09G1062900.v1.1 MD09G1063000.v1.1 MD12G1257300.v1.1
prunus_persica	Prupe.6G358100_v2.0.a1 Prupe.6G358100_v2.0.a1
pyrus_communis	pycom04g21210 pycom04g21230 pycom111g05330 pycom12g23600 pycom12g23620
rosa_chinensis	RchiOBHm_Chr2g0166221 RchiOBHm_Chr3g0448041 RchiOBHm_Chr3g0448351 RchiOBHm_Chr5g0014801 RchiOBHm_Chr7g0209461
rosa_laevigata	RLG00000003133 RLG00000021598 RLG00000021599 RLG00000025925 RLG00000025950 RLG00000025953 RLG00000032142
rosa_multiflora	Rmu_co8520521.1_g000001 Rmu_sc0005582.1_g000009 Rmu_sc0005969.1_g000018 Rmu_sc0015167.1_g000007 Rmu_ssc0000323.1_g000031
rosa_roxburghii	Rroxscaffold_1G00061750 Rroxscaffold_2G00085080 Rroxscaffold_3G00249430 Rroxscaffold_6G00426200 Rroxscaffold_6G00426480 Rroxscaffold_6G00426530
rosa_rugosa	Rorug02G0521300 Rorug02G0607900 Rorug02G0611500 Rorug02G0611600 Rorug07G0113200
rosa_samantha	Rh2AG587300 Rh2BG599200 Rh2CG569600 Rh2DG608900 Rh3AG010500 Rh3AG010600 Rh3BG010200 Rh3BG010300 Rh3CG009900 Rh3CG010000 Rh3DG010600 Rh3DG010700 Rh5CG124900 Rh7AG247100 Rh7BG242100 Rh7CG262700 Rh7DG253400
rosa_wichuraiana	Rw0G020040 Rw2G048960 Rw3G000580 Rw3G000830 Rw7G020900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	749
AasI	GACNNNNNNGTC	1 cut(s)	1266
Acc36I	ACCTGC	1 cut(s)	981
Acc65I	GGTACC	1 cut(s)	924
AccB1I	GGYRCC	1 cut(s)	924
AccB7I	CCANNNNNTGG	3 cut(s)	103, 1224, 1603
AciI	CCGC	4 cut(s)	379, 1007, 2470, 2721
AclWI	GGATC	5 cut(s)	446, 1167, 1530, 2132, 2352
AcoI	YGGCCR	3 cut(s)	380, 1633, 2718
AcsI	RAATTY	1 cut(s)	503
AcuI	CTGAAG	6 cut(s)	334, 711, 1883, 2022, 2150, 2465
AcyI	GRCGYC	1 cut(s)	559
AfaI	GTAC	6 cut(s)	567, 846, 926, 936, 1338, 2490
AflIII	ACRYGT	2 cut(s)	820, 1501
AjiI	CACGTC	1 cut(s)	2146
AjnI	CCWGG	4 cut(s)	228, 1929, 2065, 2413
AjuI	GAANNNNNNNTTGG	2 cut(s)	660, 692
Alw21I	GWGCWC	2 cut(s)	424, 574
Alw26I	GTCTC	3 cut(s)	893, 1396, 1396
AlwI	GGATC	5 cut(s)	446, 1167, 1530, 2132, 2352
AlwNI	CAGNNNCTG	1 cut(s)	902
Ama87I	CYCGRG	1 cut(s)	2331
AoxI	GGCC	6 cut(s)	380, 1170, 1633, 1700, 2169, 2718
ApeKI	GCWGC	5 cut(s)	170, 478, 815, 826, 1106
ApoI	RAATTY	1 cut(s)	503
AseI	ATTAAT	1 cut(s)	468
Asp700I	GAANNNNTTC	3 cut(s)	1644, 2478, 2490
Asp718I	GGTACC	1 cut(s)	924
AspS9I	GGNCC	6 cut(s)	970, 1259, 2170, 2200, 2212, 2637
AsuC2I	CCSGG	1 cut(s)	1637
AsuHPI	GGTGA	2 cut(s)	2092, 2338
AsuII	TTCGAA	1 cut(s)	2086
AsuNHI	GCTAGC	1 cut(s)	254
AvaI	CYCGRG	1 cut(s)	2331
AvaII	GGWCC	5 cut(s)	970, 1259, 2200, 2212, 2637
BanI	GGYRCC	1 cut(s)	924
BanII	GRGCYC	3 cut(s)	574, 607, 1837
BauI	CACGAG	1 cut(s)	1311
BbsI	GAAGAC	4 cut(s)	668, 1057, 1133, 2006
Bbv12I	GWGCWC	2 cut(s)	424, 574
BbvI	GCAGC	5 cut(s)	157, 465, 827, 838, 1093
BciT130I	CCWGG	4 cut(s)	230, 1931, 2067, 2415
BciVI	GTATCC	2 cut(s)	101, 957
BclI	TGATCA	1 cut(s)	198
BcnI	CCSGG	1 cut(s)	1637
BcoDI	GTCTC	3 cut(s)	893, 1396, 1396
BfaI	CTAG	4 cut(s)	255, 1494, 2027, 2660
BfmI	CTRYAG	2 cut(s)	1864, 2363
BfuAI	ACCTGC	1 cut(s)	981
BfuI	GTATCC	2 cut(s)	101, 957
BisI	GCNGC	7 cut(s)	171, 380, 479, 816, 827, 1107, 2721
BlsI	GCNGC	7 cut(s)	172, 381, 480, 817, 828, 1108, 2722
BmcAI	AGTACT	1 cut(s)	2490
Bme1390I	CCNGG	5 cut(s)	230, 1637, 1931, 2067, 2415
Bme18I	GGWCC	5 cut(s)	970, 1259, 2200, 2212, 2637
BmeT110I	CYCGRG	1 cut(s)	2331
BmgBI	CACGTC	1 cut(s)	2146
BmgT120I	GGNCC	6 cut(s)	970, 1259, 2170, 2200, 2212, 2637
BmiI	GGNNCC	6 cut(s)	926, 1260, 1372, 1568, 1823, 2201
BmrFI	CCNGG	5 cut(s)	230, 1637, 1931, 2067, 2415
BmrI	ACTGGG	1 cut(s)	450
BmsI	GCATC	7 cut(s)	744, 1291, 1405, 1416, 2194, 2346, 2390
BmtI	GCTAGC	1 cut(s)	258
BmuI	ACTGGG	1 cut(s)	450
BoxI	GACNNNNGTC	3 cut(s)	39, 243, 1061
BpiI	GAAGAC	4 cut(s)	668, 1057, 1133, 2006
BpmI	CTGGAG	2 cut(s)	1272, 2088
Bpu10I	CCTNAGC	1 cut(s)	1518
Bpu14I	TTCGAA	1 cut(s)	2086
BpuEI	CTTGAG	2 cut(s)	2039, 2240
BpuMI	CCSGG	1 cut(s)	1637
BsaHI	GRCGYC	1 cut(s)	559
BsaJI	CCNNGG	2 cut(s)	688, 1218
BsaWI	WCCGGW	1 cut(s)	430
Bse1I	ACTGG	3 cut(s)	104, 456, 1241
Bse3DI	GCAATG	6 cut(s)	249, 259, 1099, 1784, 2284, 2313
BseBI	CCWGG	4 cut(s)	230, 1931, 2067, 2415
BseDI	CCNNGG	2 cut(s)	688, 1218
BseMI	GCAATG	6 cut(s)	249, 259, 1099, 1784, 2284, 2313
BseMII	CTCAG	3 cut(s)	839, 1073, 1532
BseNI	ACTGG	3 cut(s)	104, 456, 1241
BseRI	GAGGAG	2 cut(s)	746, 1737
BseX3I	CGGCCG	1 cut(s)	380
BseXI	GCAGC	5 cut(s)	157, 465, 827, 838, 1093
BseYI	CCCAGC	5 cut(s)	554, 736, 2195, 2572, 2594
BsgI	GTGCAG	3 cut(s)	845, 1092, 1158
Bsh1285I	CGRYCG	1 cut(s)	383
BshFI	GGCC	6 cut(s)	382, 1172, 1635, 1702, 2171, 2720
BshNI	GGYRCC	1 cut(s)	924
BsiEI	CGRYCG	1 cut(s)	383
BsiHKAI	GWGCWC	2 cut(s)	424, 574
BsiHKCI	CYCGRG	1 cut(s)	2331
BsiSI	CCGG	3 cut(s)	383, 431, 1636
BslFI	GGGAC	5 cut(s)	292, 1272, 1917, 2213, 2684
BsmAI	GTCTC	3 cut(s)	893, 1396, 1396
BsmBI	CGTCTC	1 cut(s)	1396
BsmFI	GGGAC	5 cut(s)	292, 1272, 1917, 2213, 2684
BsmI	GAATGC	1 cut(s)	79
BsnI	GGCC	6 cut(s)	382, 1172, 1635, 1702, 2171, 2720
BsoBI	CYCGRG	1 cut(s)	2331
Bsp119I	TTCGAA	1 cut(s)	2086
Bsp1286I	GDGCHC	4 cut(s)	424, 574, 607, 1837
Bsp1407I	TGTACA	1 cut(s)	1336
Bsp143I	GATC	8 cut(s)	198, 451, 582, 1159, 1522, 1669, 2137, 2344
Bsp19I	CCATGG	1 cut(s)	688
BspACI	CCGC	4 cut(s)	379, 1007, 2470, 2721
BspANI	GGCC	6 cut(s)	382, 1172, 1635, 1702, 2171, 2720
BspCNI	CTCAG	3 cut(s)	840, 1072, 1531
BspHI	TCATGA	1 cut(s)	2347
BspLI	GGNNCC	6 cut(s)	926, 1260, 1372, 1568, 1823, 2201
BspMI	ACCTGC	1 cut(s)	981
BspOI	GCTAGC	1 cut(s)	258
BspPI	GGATC	5 cut(s)	446, 1167, 1530, 2132, 2352
BspQI	GCTCTTC	1 cut(s)	2166
BspT104I	TTCGAA	1 cut(s)	2086
BspT107I	GGYRCC	1 cut(s)	924
BsrDI	GCAATG	6 cut(s)	249, 259, 1099, 1784, 2284, 2313
BsrGI	TGTACA	1 cut(s)	1336
BsrI	ACTGG	3 cut(s)	104, 456, 1241
BssECI	CCNNGG	2 cut(s)	688, 1218
BssMI	GATC	8 cut(s)	198, 451, 582, 1159, 1522, 1669, 2137, 2344
BssNI	GRCGYC	1 cut(s)	559
BssSI	CACGAG	1 cut(s)	1311
BssT1I	CCWWGG	2 cut(s)	688, 1218
Bst2BI	CACGAG	1 cut(s)	1311
Bst2UI	CCWGG	4 cut(s)	230, 1931, 2067, 2415
Bst4CI	ACNGT	8 cut(s)	376, 844, 904, 1051, 1072, 1439, 2511, 2629
Bst6I	CTCTTC	5 cut(s)	351, 730, 2070, 2166, 2640
BstACI	GRCGYC	1 cut(s)	559
BstAPI	GCANNNNNTGC	2 cut(s)	491, 1145
BstAUI	TGTACA	1 cut(s)	1336
BstBI	TTCGAA	1 cut(s)	2086
BstC8I	GCNNGC	7 cut(s)	256, 483, 616, 1420, 2275, 2391, 2694
BstDEI	CTNAG	5 cut(s)	848, 1059, 1099, 1518, 1704
BstDSI	CCRYGG	1 cut(s)	688
BstENI	CCTNNNNNAGG	1 cut(s)	1206
BstKTI	GATC	8 cut(s)	201, 454, 585, 1162, 1525, 1672, 2140, 2347
BstMAI	GTCTC	3 cut(s)	893, 1396, 1396
BstMBI	GATC	8 cut(s)	198, 451, 582, 1159, 1522, 1669, 2137, 2344
BstMCI	CGRYCG	1 cut(s)	383
BstMWI	GCNNNNNNNGC	9 cut(s)	255, 307, 491, 611, 620, 742, 1145, 2177, 2365
BstNI	CCWGG	4 cut(s)	230, 1931, 2067, 2415
BstNSI	RCATGY	5 cut(s)	139, 824, 1337, 1457, 1505
BstPAI	GACNNNNGTC	3 cut(s)	39, 243, 1061
BstSCI	CCNGG	5 cut(s)	228, 1635, 1929, 2065, 2413
BstSFI	CTRYAG	2 cut(s)	1864, 2363
BstV1I	GCAGC	5 cut(s)	157, 465, 827, 838, 1093
BstV2I	GAAGAC	4 cut(s)	668, 1057, 1133, 2006
BstX2I	RGATCY	3 cut(s)	451, 1522, 2137
BstXI	CCANNNNNNTGG	2 cut(s)	689, 1296
BstYI	RGATCY	3 cut(s)	451, 1522, 2137
BstZI	CGGCCG	1 cut(s)	380
BsuI	GTATCC	2 cut(s)	101, 957
BsuRI	GGCC	6 cut(s)	382, 1172, 1635, 1702, 2171, 2720
BtgI	CCRYGG	1 cut(s)	688
BtrI	CACGTC	1 cut(s)	2146
BtsI	GCAGTG	1 cut(s)	2687
BtsIMutI	CAGTG	9 cut(s)	97, 358, 372, 1068, 1230, 1444, 1650, 1919, 2687
BveI	ACCTGC	1 cut(s)	981
Cac8I	GCNNGC	7 cut(s)	256, 483, 616, 1420, 2275, 2391, 2694
CaiI	CAGNNNCTG	1 cut(s)	902
CciI	TCATGA	1 cut(s)	2347
Cfr13I	GGNCC	6 cut(s)	970, 1259, 2170, 2200, 2212, 2637
CseI	GACGC	2 cut(s)	548, 1413
Csp6I	GTAC	6 cut(s)	566, 845, 925, 935, 1337, 2489
CviQI	GTAC	6 cut(s)	566, 845, 925, 935, 1337, 2489
DdeI	CTNAG	5 cut(s)	848, 1059, 1099, 1518, 1704
DpnI	GATC	8 cut(s)	200, 453, 584, 1161, 1524, 1671, 2139, 2346
DpnII	GATC	8 cut(s)	198, 451, 582, 1159, 1522, 1669, 2137, 2344
DrdI	GACNNNNNNGTC	1 cut(s)	1266
DseDI	GACNNNNNNGTC	1 cut(s)	1266
EaeI	YGGCCR	3 cut(s)	380, 1633, 2718
EagI	CGGCCG	1 cut(s)	380
Eam1104I	CTCTTC	5 cut(s)	351, 730, 2070, 2166, 2640
EarI	CTCTTC	5 cut(s)	351, 730, 2070, 2166, 2640
Ecl136II	GAGCTC	1 cut(s)	572
EclXI	CGGCCG	1 cut(s)	380
Eco130I	CCWWGG	2 cut(s)	688, 1218
Eco147I	AGGCCT	1 cut(s)	1172
Eco24I	GRGCYC	3 cut(s)	574, 607, 1837
Eco32I	GATATC	1 cut(s)	706
Eco47I	GGWCC	5 cut(s)	970, 1259, 2200, 2212, 2637
Eco52I	CGGCCG	1 cut(s)	380
Eco53kI	GAGCTC	1 cut(s)	572
Eco57I	CTGAAG	6 cut(s)	334, 711, 1883, 2022, 2150, 2465
Eco88I	CYCGRG	1 cut(s)	2331
EcoICRI	GAGCTC	1 cut(s)	572
EcoNI	CCTNNNNNAGG	1 cut(s)	1206
EcoO109I	RGGNCCY	1 cut(s)	2200
EcoRII	CCWGG	4 cut(s)	228, 1929, 2065, 2413
EcoRV	GATATC	1 cut(s)	706
EcoT14I	CCWWGG	2 cut(s)	688, 1218
EcoT38I	GRGCYC	3 cut(s)	574, 607, 1837
ErhI	CCWWGG	2 cut(s)	688, 1218
Esp3I	CGTCTC	1 cut(s)	1396
FalI	AAGNNNNNCTT	2 cut(s)	1757, 1789
FaqI	GGGAC	5 cut(s)	292, 1272, 1917, 2213, 2684
FauI	CCCGC	1 cut(s)	2463
FauNDI	CATATG	2 cut(s)	1133, 2496
FbaI	TGATCA	1 cut(s)	198
Fnu4HI	GCNGC	7 cut(s)	171, 380, 479, 816, 827, 1107, 2721
FriOI	GRGCYC	3 cut(s)	574, 607, 1837
Fsp4HI	GCNGC	7 cut(s)	171, 380, 479, 816, 827, 1107, 2721
FspBI	CTAG	4 cut(s)	255, 1494, 2027, 2660
GluI	GCNGC	7 cut(s)	171, 380, 479, 816, 827, 1107, 2721
GsaI	CCCAGC	5 cut(s)	558, 740, 2199, 2576, 2598
GsuI	CTGGAG	2 cut(s)	1272, 2088
HaeIII	GGCC	6 cut(s)	382, 1172, 1635, 1702, 2171, 2720
HapII	CCGG	3 cut(s)	383, 431, 1636
HgaI	GACGC	2 cut(s)	548, 1413
Hin1I	GRCGYC	1 cut(s)	559
HincII	GTYRAC	2 cut(s)	1593, 2449
HindII	GTYRAC	2 cut(s)	1593, 2449
HinfI	GANTC	9 cut(s)	145, 1003, 1057, 1882, 1981, 2023, 2083, 2122, 2329
HpaII	CCGG	3 cut(s)	383, 431, 1636
HphI	GGTGA	2 cut(s)	2092, 2338
Hpy166II	GTNNAC	3 cut(s)	1593, 2449, 2632
Hpy188I	TCNGA	8 cut(s)	415, 730, 898, 1087, 1167, 1177, 2440, 2503
Hpy8I	GTNNAC	3 cut(s)	1593, 2449, 2632
HpyAV	CCTTC	7 cut(s)	358, 503, 1162, 1202, 1823, 2002, 2082
HpyCH4III	ACNGT	8 cut(s)	376, 844, 904, 1051, 1072, 1439, 2511, 2629
HpyCH4IV	ACGT	2 cut(s)	673, 2145
HpyF10VI	GCNNNNNNNGC	9 cut(s)	255, 307, 491, 611, 620, 742, 1145, 2177, 2365
HpyF3I	CTNAG	5 cut(s)	848, 1059, 1099, 1518, 1704
HpySE526I	ACGT	2 cut(s)	673, 2145
Hsp92I	GRCGYC	1 cut(s)	559
KpnI	GGTACC	1 cut(s)	928
Ksp22I	TGATCA	1 cut(s)	198
Kzo9I	GATC	8 cut(s)	198, 451, 582, 1159, 1522, 1669, 2137, 2344
LguI	GCTCTTC	1 cut(s)	2166
LmnI	GCTCC	5 cut(s)	427, 733, 742, 1750, 2386
Lsp1109I	GCAGC	5 cut(s)	157, 465, 827, 838, 1093
LweI	GCATC	7 cut(s)	744, 1291, 1405, 1416, 2194, 2346, 2390
MaeI	CTAG	4 cut(s)	255, 1494, 2027, 2660
MaeII	ACGT	2 cut(s)	673, 2145
MaeIII	GTNAC	6 cut(s)	232, 370, 988, 1282, 2326, 2605
MalI	GATC	8 cut(s)	200, 453, 584, 1161, 1524, 1671, 2139, 2346
MboI	GATC	8 cut(s)	198, 451, 582, 1159, 1522, 1669, 2137, 2344
MfeI	CAATTG	3 cut(s)	338, 1443, 1662
MflI	RGATCY	3 cut(s)	451, 1522, 2137
MhlI	GDGCHC	4 cut(s)	424, 574, 607, 1837
MlyI	GAGTC	2 cut(s)	1051, 2323
MmeI	TCCRAC	2 cut(s)	1531, 2493
MroXI	GAANNNNTTC	3 cut(s)	1644, 2478, 2490
MseI	TTAA	8 cut(s)	468, 806, 998, 1044, 1272, 2097, 2565, 2700
MslI	CAYNNNNRTG	2 cut(s)	2306, 2555
MspA1I	CMGCKG	1 cut(s)	499
MspI	CCGG	3 cut(s)	383, 431, 1636
MspR9I	CCNGG	5 cut(s)	230, 1637, 1931, 2067, 2415
MunI	CAATTG	3 cut(s)	338, 1443, 1662
Mva1269I	GAATGC	1 cut(s)	79
MvaI	CCWGG	4 cut(s)	230, 1931, 2067, 2415
MwoI	GCNNNNNNNGC	9 cut(s)	255, 307, 491, 611, 620, 742, 1145, 2177, 2365
NciI	CCSGG	1 cut(s)	1637
NcoI	CCATGG	1 cut(s)	688
NdeI	CATATG	2 cut(s)	1133, 2496
NdeII	GATC	8 cut(s)	198, 451, 582, 1159, 1522, 1669, 2137, 2344
NheI	GCTAGC	1 cut(s)	254
NlaIV	GGNNCC	6 cut(s)	926, 1260, 1372, 1568, 1823, 2201
NmuCI	GTSAC	5 cut(s)	232, 370, 988, 2326, 2605
NspI	RCATGY	5 cut(s)	139, 824, 1337, 1457, 1505
NspV	TTCGAA	1 cut(s)	2086
PagI	TCATGA	1 cut(s)	2347
PceI	AGGCCT	1 cut(s)	1172
PciI	ACATGT	2 cut(s)	820, 1501
PciSI	GCTCTTC	1 cut(s)	2166
PctI	GAATGC	1 cut(s)	79
PdmI	GAANNNNTTC	3 cut(s)	1644, 2478, 2490
PfeI	GAWTC	7 cut(s)	145, 1003, 1882, 1981, 2023, 2083, 2122
PflMI	CCANNNNNTGG	3 cut(s)	103, 1224, 1603
PfoI	TCCNGGA	1 cut(s)	2413
PkrI	GCNGC	7 cut(s)	172, 381, 480, 817, 828, 1108, 2722
PleI	GAGTC	2 cut(s)	1051, 2323
PpsI	GAGTC	2 cut(s)	1051, 2323
PpuMI	RGGWCCY	1 cut(s)	2200
PscI	ACATGT	2 cut(s)	820, 1501
PshAI	GACNNNNGTC	3 cut(s)	39, 243, 1061
PshBI	ATTAAT	1 cut(s)	468
PsiI	TTATAA	1 cut(s)	749
Psp124BI	GAGCTC	1 cut(s)	574
Psp5II	RGGWCCY	1 cut(s)	2200
Psp6I	CCWGG	4 cut(s)	228, 1929, 2065, 2413
PspFI	CCCAGC	5 cut(s)	554, 736, 2195, 2572, 2594
PspGI	CCWGG	4 cut(s)	228, 1929, 2065, 2413
PspN4I	GGNNCC	6 cut(s)	926, 1260, 1372, 1568, 1823, 2201
PspPI	GGNCC	6 cut(s)	970, 1259, 2170, 2200, 2212, 2637
PspPPI	RGGWCCY	1 cut(s)	2200
PstNI	CAGNNNCTG	1 cut(s)	902
PsuI	RGATCY	3 cut(s)	451, 1522, 2137
PvuII	CAGCTG	1 cut(s)	499
RsaI	GTAC	6 cut(s)	567, 846, 926, 936, 1338, 2490
RsaNI	GTAC	6 cut(s)	566, 845, 925, 935, 1337, 2489
RseI	CAYNNNNRTG	2 cut(s)	2306, 2555
SacI	GAGCTC	1 cut(s)	574
SapI	GCTCTTC	1 cut(s)	2166
SaqAI	TTAA	8 cut(s)	468, 806, 998, 1044, 1272, 2097, 2565, 2700
SatI	GCNGC	7 cut(s)	171, 380, 479, 816, 827, 1107, 2721
Sau3AI	GATC	8 cut(s)	198, 451, 582, 1159, 1522, 1669, 2137, 2344
Sau96I	GGNCC	6 cut(s)	970, 1259, 2170, 2200, 2212, 2637
ScaI	AGTACT	1 cut(s)	2490
SchI	GAGTC	2 cut(s)	1051, 2323
ScrFI	CCNGG	5 cut(s)	230, 1637, 1931, 2067, 2415
SduI	GDGCHC	4 cut(s)	424, 574, 607, 1837
SfaNI	GCATC	7 cut(s)	744, 1291, 1405, 1416, 2194, 2346, 2390
SfcI	CTRYAG	2 cut(s)	1864, 2363
SfuI	TTCGAA	1 cut(s)	2086
SinI	GGWCC	5 cut(s)	970, 1259, 2200, 2212, 2637
SmiMI	CAYNNNNRTG	2 cut(s)	2306, 2555
SmlI	CTYRAG	2 cut(s)	2018, 2219
SmoI	CTYRAG	2 cut(s)	2018, 2219
SseBI	AGGCCT	1 cut(s)	1172
SsiI	CCGC	4 cut(s)	379, 1007, 2470, 2721
SspI	AATATT	2 cut(s)	1625, 2259
SspMI	CTAG	4 cut(s)	255, 1494, 2027, 2660
SstI	GAGCTC	1 cut(s)	574
StuI	AGGCCT	1 cut(s)	1172
StyD4I	CCNGG	5 cut(s)	228, 1635, 1929, 2065, 2413
StyI	CCWWGG	2 cut(s)	688, 1218
TaaI	ACNGT	8 cut(s)	376, 844, 904, 1051, 1072, 1439, 2511, 2629
TaiI	ACGT	2 cut(s)	676, 2148
TaqI	TCGA	4 cut(s)	287, 579, 838, 2086
TatI	WGTACW	3 cut(s)	844, 1336, 2488
TauI	GCSGC	2 cut(s)	382, 2723
TfiI	GAWTC	7 cut(s)	145, 1003, 1882, 1981, 2023, 2083, 2122
Tru1I	TTAA	8 cut(s)	468, 806, 998, 1044, 1272, 2097, 2565, 2700
Tru9I	TTAA	8 cut(s)	468, 806, 998, 1044, 1272, 2097, 2565, 2700
TscAI	CASTG	9 cut(s)	104, 358, 379, 1075, 1237, 1444, 1657, 1926, 2694
TseFI	GTSAC	5 cut(s)	232, 370, 988, 2326, 2605
TseI	GCWGC	5 cut(s)	170, 478, 815, 826, 1106
Tsp45I	GTSAC	5 cut(s)	232, 370, 988, 2326, 2605
TspRI	CASTG	9 cut(s)	104, 358, 379, 1075, 1237, 1444, 1657, 1926, 2694
Van91I	CCANNNNNTGG	3 cut(s)	103, 1224, 1603
VpaK11BI	GGWCC	5 cut(s)	970, 1259, 2200, 2212, 2637
VspI	ATTAAT	1 cut(s)	468
XagI	CCTNNNNNAGG	1 cut(s)	1206
XapI	RAATTY	1 cut(s)	503
XceI	RCATGY	5 cut(s)	139, 824, 1337, 1457, 1505
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2411
XmnI	GAANNNNTTC	3 cut(s)	1644, 2478, 2490
XspI	CTAG	4 cut(s)	255, 1494, 2027, 2660
ZrmI	AGTACT	1 cut(s)	2490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.