U5 small nuclear ribonucleoprotein 200 kDa
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Helicase_PWI | PF18149 | 251 - 358 | 2.6e-32 | N-terminal helicase PWI domain |
| DEAD | PF00270 | 484 - 662 | 6.6e-32 | DEAD/DEAH box helicase |
| ResIII | PF04851 | 490 - 657 | 2.8e-11 | Type III restriction enzyme, res subunit |
| Helicase_C | PF00271 | 767 - 861 | 9.9e-10 | Helicase conserved C-terminal domain |
| WHD_SNRNP200 | PF23445 | 892 - 968 | 1.9e-24 | Winged Helix-turn-helix domain |
| Sec63 | PF02889 | 984 - 1287 | 1.1e-97 | Sec63 Brl domain |
| ResIII | PF04851 | 1329 - 1483 | 2.3e-11 | Type III restriction enzyme, res subunit |
| DEAD | PF00270 | 1330 - 1504 | 6e-30 | DEAD/DEAH box helicase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 924 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 4215 |
| AatII | GACGTC | 1 cut(s) | 298 |
| Acc16I | TGCGCA | 1 cut(s) | 4081 |
| Acc36I | ACCTGC | 1 cut(s) | 3924 |
| AccB1I | GGYRCC | 1 cut(s) | 1273 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 5017 |
| AccI | GTMKAC | 1 cut(s) | 1623 |
| AccII | CGCG | 5 cut(s) | 377, 4134, 4329, 4658, 4810 |
| AccIII | TCCGGA | 1 cut(s) | 1294 |
| AclWI | GGATC | 6 cut(s) | 2409, 2869, 3161, 3759, 4521, 4749 |
| AcoI | YGGCCR | 1 cut(s) | 5047 |
| AcsI | RAATTY | 8 cut(s) | 412, 421, 928, 1854, 2286, 3074, 3218, 3777 |
| AcuI | CTGAAG | 8 cut(s) | 276, 282, 770, 870, 1020, 1674, 3041, 3749 |
| AcvI | CACGTG | 1 cut(s) | 107 |
| AcyI | GRCGYC | 3 cut(s) | 295, 1695, 3274 |
| AdeI | CACNNNGTG | 1 cut(s) | 3266 |
| AfaI | GTAC | 8 cut(s) | 84, 914, 1816, 2771, 3282, 3597, 3675, 4655 |
| AfeI | AGCGCT | 1 cut(s) | 4485 |
| AflIII | ACRYGT | 3 cut(s) | 2002, 3133, 4720 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 4930 |
| AhlI | ACTAGT | 2 cut(s) | 1088, 3115 |
| AjiI | CACGTC | 1 cut(s) | 225 |
| AjnI | CCWGG | 7 cut(s) | 78, 271, 2499, 2943, 3159, 3452, 4564 |
| AjuI | GAANNNNNNNTTGG | 8 cut(s) | 327, 359, 2709, 2741, 3375, 3407, 3431, 3463 |
| Alw21I | GWGCWC | 4 cut(s) | 983, 1516, 2184, 3289 |
| Alw26I | GTCTC | 9 cut(s) | 144, 1236, 1745, 2067, 2440, 4435, 4435, 4818, 4860 |
| Alw44I | GTGCAC | 2 cut(s) | 979, 2180 |
| AlwI | GGATC | 6 cut(s) | 2409, 2869, 3161, 3759, 4521, 4749 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1729, 5081 |
| Ama87I | CYCGRG | 2 cut(s) | 73, 2185 |
| Aor13HI | TCCGGA | 1 cut(s) | 1294 |
| Aor51HI | AGCGCT | 1 cut(s) | 4485 |
| AoxI | GGCC | 7 cut(s) | 1879, 2020, 2048, 3450, 4113, 4546, 5047 |
| ApaLI | GTGCAC | 2 cut(s) | 979, 2180 |
| ApoI | RAATTY | 8 cut(s) | 412, 421, 928, 1854, 2286, 3074, 3218, 3777 |
| AseI | ATTAAT | 2 cut(s) | 888, 3183 |
| AspLEI | GCGC | 7 cut(s) | 37, 377, 3571, 4082, 4134, 4486, 4575 |
| AspS9I | GGNCC | 6 cut(s) | 1066, 1880, 2020, 2496, 3913, 4208 |
| AsuC2I | CCSGG | 3 cut(s) | 43, 682, 5051 |
| AsuHPI | GGTGA | 8 cut(s) | 1016, 1217, 1714, 1730, 1759, 2152, 2827, 3439 |
| AsuNHI | GCTAGC | 1 cut(s) | 2969 |
| AvaI | CYCGRG | 2 cut(s) | 73, 2185 |
| AvaII | GGWCC | 4 cut(s) | 1066, 2496, 3913, 4208 |
| BaeGI | GKGCMC | 4 cut(s) | 983, 1420, 2184, 2625 |
| BanI | GGYRCC | 1 cut(s) | 1273 |
| BanII | GRGCYC | 2 cut(s) | 3289, 3322 |
| BauI | CACGAG | 4 cut(s) | 116, 993, 2211, 4898 |
| BbrPI | CACGTG | 1 cut(s) | 107 |
| BbsI | GAAGAC | 7 cut(s) | 199, 609, 1500, 2274, 2584, 4000, 4076 |
| Bbv12I | GWGCWC | 4 cut(s) | 983, 1516, 2184, 3289 |
| BceAI | ACGGC | 2 cut(s) | 3649, 4190 |
| BciT130I | CCWGG | 7 cut(s) | 80, 273, 2501, 2945, 3161, 3454, 4566 |
| BciVI | GTATCC | 3 cut(s) | 858, 1449, 3900 |
| BclI | TGATCA | 1 cut(s) | 2913 |
| BcnI | CCSGG | 3 cut(s) | 43, 682, 5051 |
| BcoDI | GTCTC | 9 cut(s) | 144, 1236, 1745, 2067, 2440, 4435, 4435, 4818, 4860 |
| BcuI | ACTAGT | 2 cut(s) | 1088, 3115 |
| BfmI | CTRYAG | 1 cut(s) | 2148 |
| BfoI | RGCGCY | 1 cut(s) | 4487 |
| BfuAI | ACCTGC | 1 cut(s) | 3924 |
| BfuI | GTATCC | 3 cut(s) | 858, 1449, 3900 |
| BglII | AGATCT | 1 cut(s) | 1310 |
| Bme18I | GGWCC | 4 cut(s) | 1066, 2496, 3913, 4208 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 4930 |
| BmeT110I | CYCGRG | 2 cut(s) | 73, 2185 |
| BmgBI | CACGTC | 1 cut(s) | 225 |
| BmgT120I | GGNCC | 6 cut(s) | 1066, 1880, 2020, 2496, 3913, 4208 |
| BmiI | GGNNCC | 8 cut(s) | 1275, 2497, 2498, 3663, 4209, 4411, 4793, 5276 |
| BmrI | ACTGGG | 5 cut(s) | 1530, 2628, 3165, 4571, 5069 |
| BmtI | GCTAGC | 1 cut(s) | 2973 |
| BmuI | ACTGGG | 5 cut(s) | 1530, 2628, 3165, 4571, 5069 |
| BoxI | GACNNNNGTC | 2 cut(s) | 2958, 4004 |
| BpiI | GAAGAC | 7 cut(s) | 199, 609, 1500, 2274, 2584, 4000, 4076 |
| BpmI | CTGGAG | 2 cut(s) | 659, 4287 |
| Bpu10I | CCTNAGC | 1 cut(s) | 4737 |
| BpuEI | CTTGAG | 2 cut(s) | 858, 4481 |
| BpuMI | CCSGG | 3 cut(s) | 43, 682, 5051 |
| Bsa29I | ATCGAT | 2 cut(s) | 1058, 3052 |
| BsaAI | YACGTR | 2 cut(s) | 107, 2003 |
| BsaHI | GRCGYC | 3 cut(s) | 295, 1695, 3274 |
| BsaI | GGTCTC | 2 cut(s) | 2440, 4818 |
| BsaJI | CCNNGG | 8 cut(s) | 90, 2096, 2248, 2499, 3403, 3453, 4167, 4509 |
| BsaWI | WCCGGW | 3 cut(s) | 466, 1294, 3145 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 128, 158, 1022, 1052, 2592, 2622 |
| Bse118I | RCCGGY | 3 cut(s) | 125, 196, 2470 |
| Bse3DI | GCAATG | 4 cut(s) | 1359, 2964, 4858, 5198 |
| BseAI | TCCGGA | 1 cut(s) | 1294 |
| BseBI | CCWGG | 7 cut(s) | 80, 273, 2501, 2945, 3161, 3454, 4566 |
| BseCI | ATCGAT | 2 cut(s) | 1058, 3052 |
| BseDI | CCNNGG | 8 cut(s) | 90, 2096, 2248, 2499, 3403, 3453, 4167, 4509 |
| BseMI | GCAATG | 4 cut(s) | 1359, 2964, 4858, 5198 |
| BseMII | CTCAG | 9 cut(s) | 1247, 1457, 1767, 2619, 3079, 3590, 4016, 4751, 4941 |
| BseRI | GAGGAG | 6 cut(s) | 626, 668, 1043, 1046, 2870, 5151 |
| BseSI | GKGCMC | 4 cut(s) | 983, 1420, 2184, 2625 |
| BseYI | CCCAGC | 2 cut(s) | 2366, 3269 |
| BsgI | GTGCAG | 5 cut(s) | 782, 2214, 2592, 3596, 4035 |
| Bsh1236I | CGCG | 5 cut(s) | 377, 4134, 4329, 4658, 4810 |
| BshFI | GGCC | 7 cut(s) | 1881, 2022, 2050, 3452, 4115, 4548, 5049 |
| BshNI | GGYRCC | 1 cut(s) | 1273 |
| BshVI | ATCGAT | 2 cut(s) | 1058, 3052 |
| BsiHKAI | GWGCWC | 4 cut(s) | 983, 1516, 2184, 3289 |
| BsiHKCI | CYCGRG | 2 cut(s) | 73, 2185 |
| BsiWI | CGTACG | 1 cut(s) | 4653 |
| BslFI | GGGAC | 7 cut(s) | 1184, 1200, 2039, 2509, 3007, 4221, 4917 |
| BsmAI | GTCTC | 9 cut(s) | 144, 1236, 1745, 2067, 2440, 4435, 4435, 4818, 4860 |
| BsmBI | CGTCTC | 2 cut(s) | 4435, 4860 |
| BsmFI | GGGAC | 7 cut(s) | 1184, 1200, 2039, 2509, 3007, 4221, 4917 |
| BsmI | GAATGC | 3 cut(s) | 463, 1427, 2716 |
| BsnI | GGCC | 7 cut(s) | 1881, 2022, 2050, 3452, 4115, 4548, 5049 |
| Bso31I | GGTCTC | 2 cut(s) | 2440, 4818 |
| BsoBI | CYCGRG | 2 cut(s) | 73, 2185 |
| Bsp1286I | GDGCHC | 7 cut(s) | 983, 1420, 1516, 2184, 2625, 3289, 3322 |
| Bsp13I | TCCGGA | 1 cut(s) | 1294 |
| Bsp19I | CCATGG | 2 cut(s) | 2096, 3403 |
| BspANI | GGCC | 7 cut(s) | 1881, 2022, 2050, 3452, 4115, 4548, 5049 |
| BspCNI | CTCAG | 9 cut(s) | 1246, 1456, 1768, 2620, 3078, 3591, 4015, 4750, 4942 |
| BspDI | ATCGAT | 2 cut(s) | 1058, 3052 |
| BspEI | TCCGGA | 1 cut(s) | 1294 |
| BspFNI | CGCG | 5 cut(s) | 377, 4134, 4329, 4658, 4810 |
| BspHI | TCATGA | 1 cut(s) | 3712 |
| BspLI | GGNNCC | 8 cut(s) | 1275, 2497, 2498, 3663, 4209, 4411, 4793, 5276 |
| BspMI | ACCTGC | 1 cut(s) | 3924 |
| BspOI | GCTAGC | 1 cut(s) | 2973 |
| BspPI | GGATC | 6 cut(s) | 2409, 2869, 3161, 3759, 4521, 4749 |
| BspQI | GCTCTTC | 1 cut(s) | 1145 |
| BspT107I | GGYRCC | 1 cut(s) | 1273 |
| BspTNI | GGTCTC | 2 cut(s) | 2440, 4818 |
| BsrDI | GCAATG | 4 cut(s) | 1359, 2964, 4858, 5198 |
| BsrFI | RCCGGY | 3 cut(s) | 125, 196, 2470 |
| BssAI | RCCGGY | 3 cut(s) | 125, 196, 2470 |
| BssECI | CCNNGG | 8 cut(s) | 90, 2096, 2248, 2499, 3403, 3453, 4167, 4509 |
| BssNAI | GTATAC | 1 cut(s) | 1624 |
| BssNI | GRCGYC | 3 cut(s) | 295, 1695, 3274 |
| BssSI | CACGAG | 4 cut(s) | 116, 993, 2211, 4898 |
| BssT1I | CCWWGG | 5 cut(s) | 2096, 2248, 3403, 4167, 4509 |
| Bst1107I | GTATAC | 1 cut(s) | 1624 |
| Bst2BI | CACGAG | 4 cut(s) | 116, 993, 2211, 4898 |
| Bst2UI | CCWGG | 7 cut(s) | 80, 273, 2501, 2945, 3161, 3454, 4566 |
| Bst6I | CTCTTC | 9 cut(s) | 227, 324, 588, 645, 846, 1013, 1128, 1145, 1743 |
| BstACI | GRCGYC | 3 cut(s) | 295, 1695, 3274 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 316, 2450, 3206, 4088 |
| BstBAI | YACGTR | 2 cut(s) | 107, 2003 |
| BstDSI | CCRYGG | 3 cut(s) | 90, 2096, 3403 |
| BstEII | GGTNACC | 1 cut(s) | 1718 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 3457, 4155 |
| BstFNI | CGCG | 5 cut(s) | 377, 4134, 4329, 4658, 4810 |
| BstH2I | RGCGCY | 1 cut(s) | 4487 |
| BstHHI | GCGC | 7 cut(s) | 37, 377, 3571, 4082, 4134, 4486, 4575 |
| BstMAI | GTCTC | 9 cut(s) | 144, 1236, 1745, 2067, 2440, 4435, 4435, 4818, 4860 |
| BstNI | CCWGG | 7 cut(s) | 80, 273, 2501, 2945, 3161, 3454, 4566 |
| BstNSI | RCATGY | 9 cut(s) | 115, 1046, 1079, 2423, 3575, 4132, 4352, 4676, 4724 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 2958, 4004 |
| BstPI | GGTNACC | 1 cut(s) | 1718 |
| BstSFI | CTRYAG | 1 cut(s) | 2148 |
| BstSLI | GKGCMC | 4 cut(s) | 983, 1420, 2184, 2625 |
| BstUI | CGCG | 5 cut(s) | 377, 4134, 4329, 4658, 4810 |
| BstV2I | GAAGAC | 7 cut(s) | 199, 609, 1500, 2274, 2584, 4000, 4076 |
| BstX2I | RGATCY | 4 cut(s) | 1310, 2401, 4513, 4741 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 3404, 4311 |
| BstYI | RGATCY | 4 cut(s) | 1310, 2401, 4513, 4741 |
| BstZ17I | GTATAC | 1 cut(s) | 1624 |
| Bsu15I | ATCGAT | 2 cut(s) | 1058, 3052 |
| BsuI | GTATCC | 3 cut(s) | 858, 1449, 3900 |
| BsuRI | GGCC | 7 cut(s) | 1881, 2022, 2050, 3452, 4115, 4548, 5049 |
| BsuTUI | ATCGAT | 2 cut(s) | 1058, 3052 |
| BtgI | CCRYGG | 3 cut(s) | 90, 2096, 3403 |
| BtgZI | GCGATG | 1 cut(s) | 4652 |
| BtrI | CACGTC | 1 cut(s) | 225 |
| BtsI | GCAGTG | 2 cut(s) | 839, 1162 |
| BveI | ACCTGC | 1 cut(s) | 3924 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1729, 5081 |
| CciI | TCATGA | 1 cut(s) | 3712 |
| CfoI | GCGC | 7 cut(s) | 37, 377, 3571, 4082, 4134, 4486, 4575 |
| Cfr10I | RCCGGY | 3 cut(s) | 125, 196, 2470 |
| Cfr13I | GGNCC | 6 cut(s) | 1066, 1880, 2020, 2496, 3913, 4208 |
| ClaI | ATCGAT | 2 cut(s) | 1058, 3052 |
| CseI | GACGC | 4 cut(s) | 1684, 3263, 4452, 4877 |
| Csp6I | GTAC | 8 cut(s) | 83, 913, 1815, 2770, 3281, 3596, 3674, 4654 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1592, 1627 |
| CviQI | GTAC | 8 cut(s) | 83, 913, 1815, 2770, 3281, 3596, 3674, 4654 |
| DraI | TTTAAA | 1 cut(s) | 4266 |
| DraIII | CACNNNGTG | 1 cut(s) | 3266 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 4215 |
| DriI | GACNNNNNGTC | 1 cut(s) | 4930 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 4215 |
| EaeI | YGGCCR | 1 cut(s) | 5047 |
| Eam1104I | CTCTTC | 9 cut(s) | 227, 324, 588, 645, 846, 1013, 1128, 1145, 1743 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 4930 |
| EarI | CTCTTC | 9 cut(s) | 227, 324, 588, 645, 846, 1013, 1128, 1145, 1743 |
| EciI | GGCGGA | 3 cut(s) | 215, 395, 3783 |
| Ecl136II | GAGCTC | 1 cut(s) | 3287 |
| Eco130I | CCWWGG | 5 cut(s) | 2096, 2248, 3403, 4167, 4509 |
| Eco147I | AGGCCT | 2 cut(s) | 2050, 4115 |
| Eco24I | GRGCYC | 2 cut(s) | 3289, 3322 |
| Eco31I | GGTCTC | 2 cut(s) | 2440, 4818 |
| Eco32I | GATATC | 2 cut(s) | 1789, 3421 |
| Eco47I | GGWCC | 4 cut(s) | 1066, 2496, 3913, 4208 |
| Eco47III | AGCGCT | 1 cut(s) | 4485 |
| Eco53kI | GAGCTC | 1 cut(s) | 3287 |
| Eco57I | CTGAAG | 8 cut(s) | 276, 282, 770, 870, 1020, 1674, 3041, 3749 |
| Eco72I | CACGTG | 1 cut(s) | 107 |
| Eco88I | CYCGRG | 2 cut(s) | 73, 2185 |
| Eco91I | GGTNACC | 1 cut(s) | 1718 |
| EcoICRI | GAGCTC | 1 cut(s) | 3287 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 3457, 4155 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1880, 2020, 2496 |
| EcoO65I | GGTNACC | 1 cut(s) | 1718 |
| EcoRI | GAATTC | 1 cut(s) | 421 |
| EcoRII | CCWGG | 7 cut(s) | 78, 271, 2499, 2943, 3159, 3452, 4564 |
| EcoRV | GATATC | 2 cut(s) | 1789, 3421 |
| EcoT14I | CCWWGG | 5 cut(s) | 2096, 2248, 3403, 4167, 4509 |
| EcoT38I | GRGCYC | 2 cut(s) | 3289, 3322 |
| ErhI | CCWWGG | 5 cut(s) | 2096, 2248, 3403, 4167, 4509 |
| Esp3I | CGTCTC | 2 cut(s) | 4435, 4860 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 4350, 4382, 5171, 5203 |
| FaqI | GGGAC | 7 cut(s) | 1184, 1200, 2039, 2509, 3007, 4221, 4917 |
| FauNDI | CATATG | 3 cut(s) | 2344, 2596, 4076 |
| FbaI | TGATCA | 1 cut(s) | 2913 |
| FblI | GTMKAC | 1 cut(s) | 1623 |
| FriOI | GRGCYC | 2 cut(s) | 3289, 3322 |
| FspI | TGCGCA | 1 cut(s) | 4081 |
| GlaI | GCGC | 7 cut(s) | 36, 376, 3570, 4081, 4133, 4485, 4574 |
| GsaI | CCCAGC | 2 cut(s) | 2370, 3273 |
| GsuI | CTGGAG | 2 cut(s) | 659, 4287 |
| HaeII | RGCGCY | 1 cut(s) | 4487 |
| HaeIII | GGCC | 7 cut(s) | 1881, 2022, 2050, 3452, 4115, 4548, 5049 |
| HgaI | GACGC | 4 cut(s) | 1684, 3263, 4452, 4877 |
| HhaI | GCGC | 7 cut(s) | 37, 377, 3571, 4082, 4134, 4486, 4575 |
| Hin1I | GRCGYC | 3 cut(s) | 295, 1695, 3274 |
| Hin6I | GCGC | 7 cut(s) | 35, 375, 3569, 4080, 4132, 4484, 4573 |
| HinP1I | GCGC | 7 cut(s) | 35, 375, 3569, 4080, 4132, 4484, 4573 |
| HindIII | AAGCTT | 3 cut(s) | 804, 842, 2751 |
| HphI | GGTGA | 8 cut(s) | 1016, 1217, 1714, 1730, 1759, 2152, 2827, 3439 |
| Hpy166II | GTNNAC | 9 cut(s) | 278, 981, 1066, 1466, 1624, 2182, 2772, 3253, 4457 |
| Hpy8I | GTNNAC | 9 cut(s) | 278, 981, 1066, 1466, 1624, 2182, 2772, 3253, 4457 |
| Hpy99I | CGWCG | 5 cut(s) | 215, 229, 232, 297, 300 |
| HpyCH4IV | ACGT | 7 cut(s) | 106, 224, 295, 1626, 2002, 3133, 4652 |
| HpySE526I | ACGT | 7 cut(s) | 106, 224, 295, 1626, 2002, 3133, 4652 |
| Hsp92I | GRCGYC | 3 cut(s) | 295, 1695, 3274 |
| HspAI | GCGC | 7 cut(s) | 35, 375, 3569, 4080, 4132, 4484, 4573 |
| KflI | GGGWCCC | 1 cut(s) | 2496 |
| Kpn2I | TCCGGA | 1 cut(s) | 1294 |
| KroI | GCCGGC | 1 cut(s) | 2470 |
| KroNI | GCCGGC | 1 cut(s) | 2472 |
| Ksp22I | TGATCA | 1 cut(s) | 2913 |
| LguI | GCTCTTC | 1 cut(s) | 1145 |
| MaeII | ACGT | 7 cut(s) | 106, 224, 295, 1626, 2002, 3133, 4652 |
| MfeI | CAATTG | 3 cut(s) | 2111, 2705, 4662 |
| MflI | RGATCY | 4 cut(s) | 1310, 2401, 4513, 4741 |
| MhlI | GDGCHC | 7 cut(s) | 983, 1420, 1516, 2184, 2625, 3289, 3322 |
| MlyI | GAGTC | 6 cut(s) | 89, 146, 1435, 1726, 3316, 3994 |
| MmeI | TCCRAC | 5 cut(s) | 278, 2056, 2745, 3414, 4750 |
| MroI | TCCGGA | 1 cut(s) | 1294 |
| MroNI | GCCGGC | 1 cut(s) | 2470 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1583 |
| MspA1I | CMGCKG | 4 cut(s) | 1237, 2392, 3214, 5002 |
| MunI | CAATTG | 3 cut(s) | 2111, 2705, 4662 |
| Mva1269I | GAATGC | 3 cut(s) | 463, 1427, 2716 |
| MvaI | CCWGG | 7 cut(s) | 80, 273, 2501, 2945, 3161, 3454, 4566 |
| MvnI | CGCG | 5 cut(s) | 377, 4134, 4329, 4658, 4810 |
| NaeI | GCCGGC | 1 cut(s) | 2472 |
| NciI | CCSGG | 3 cut(s) | 43, 682, 5051 |
| NcoI | CCATGG | 2 cut(s) | 2096, 3403 |
| NdeI | CATATG | 3 cut(s) | 2344, 2596, 4076 |
| NgoMIV | GCCGGC | 1 cut(s) | 2470 |
| NheI | GCTAGC | 1 cut(s) | 2969 |
| NlaIV | GGNNCC | 8 cut(s) | 1275, 2497, 2498, 3663, 4209, 4411, 4793, 5276 |
| NmeAIII | GCCGAG | 2 cut(s) | 292, 384 |
| NsbI | TGCGCA | 1 cut(s) | 4081 |
| NspI | RCATGY | 9 cut(s) | 115, 1046, 1079, 2423, 3575, 4132, 4352, 4676, 4724 |
| PaeI | GCATGC | 3 cut(s) | 1079, 4132, 4676 |
| PaeR7I | CTCGAG | 2 cut(s) | 73, 2185 |
| PagI | TCATGA | 1 cut(s) | 3712 |
| PceI | AGGCCT | 2 cut(s) | 2050, 4115 |
| PciI | ACATGT | 1 cut(s) | 4720 |
| PciSI | GCTCTTC | 1 cut(s) | 1145 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 289, 2218 |
| PctI | GAATGC | 3 cut(s) | 463, 1427, 2716 |
| PdiI | GCCGGC | 1 cut(s) | 2472 |
| Pfl23II | CGTACG | 1 cut(s) | 4653 |
| PflFI | GACNNNGTC | 1 cut(s) | 4037 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 5017 |
| PleI | GAGTC | 6 cut(s) | 89, 145, 1435, 1726, 3315, 3994 |
| PmaCI | CACGTG | 1 cut(s) | 107 |
| PmlI | CACGTG | 1 cut(s) | 107 |
| PpsI | GAGTC | 6 cut(s) | 89, 145, 1435, 1726, 3315, 3994 |
| Ppu21I | YACGTR | 2 cut(s) | 107, 2003 |
| PpuMI | RGGWCCY | 1 cut(s) | 2496 |
| PscI | ACATGT | 1 cut(s) | 4720 |
| PshAI | GACNNNNGTC | 2 cut(s) | 2958, 4004 |
| PshBI | ATTAAT | 2 cut(s) | 888, 3183 |
| PsiI | TTATAA | 1 cut(s) | 924 |
| Psp124BI | GAGCTC | 1 cut(s) | 3289 |
| Psp5II | RGGWCCY | 1 cut(s) | 2496 |
| Psp6I | CCWGG | 7 cut(s) | 78, 271, 2499, 2943, 3159, 3452, 4564 |
| PspCI | CACGTG | 1 cut(s) | 107 |
| PspEI | GGTNACC | 1 cut(s) | 1718 |
| PspFI | CCCAGC | 2 cut(s) | 2366, 3269 |
| PspGI | CCWGG | 7 cut(s) | 78, 271, 2499, 2943, 3159, 3452, 4564 |
| PspLI | CGTACG | 1 cut(s) | 4653 |
| PspN4I | GGNNCC | 8 cut(s) | 1275, 2497, 2498, 3663, 4209, 4411, 4793, 5276 |
| PspPI | GGNCC | 6 cut(s) | 1066, 1880, 2020, 2496, 3913, 4208 |
| PspPPI | RGGWCCY | 1 cut(s) | 2496 |
| PspXI | VCTCGAGB | 2 cut(s) | 73, 2185 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1729, 5081 |
| PsuI | RGATCY | 4 cut(s) | 1310, 2401, 4513, 4741 |
| PsyI | GACNNNGTC | 1 cut(s) | 4037 |
| PvuII | CAGCTG | 3 cut(s) | 1237, 2392, 3214 |
| RsaI | GTAC | 8 cut(s) | 84, 914, 1816, 2771, 3282, 3597, 3675, 4655 |
| RsaNI | GTAC | 8 cut(s) | 83, 913, 1815, 2770, 3281, 3596, 3674, 4654 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1583 |
| SacI | GAGCTC | 1 cut(s) | 3289 |
| SapI | GCTCTTC | 1 cut(s) | 1145 |
| Sau96I | GGNCC | 6 cut(s) | 1066, 1880, 2020, 2496, 3913, 4208 |
| SchI | GAGTC | 6 cut(s) | 89, 146, 1435, 1726, 3316, 3994 |
| SduI | GDGCHC | 7 cut(s) | 983, 1420, 1516, 2184, 2625, 3289, 3322 |
| SfcI | CTRYAG | 1 cut(s) | 2148 |
| Sfr274I | CTCGAG | 2 cut(s) | 73, 2185 |
| SinI | GGWCC | 4 cut(s) | 1066, 2496, 3913, 4208 |
| SlaI | CTCGAG | 2 cut(s) | 73, 2185 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1583 |
| SmlI | CTYRAG | 4 cut(s) | 73, 873, 2185, 4460 |
| SmoI | CTYRAG | 4 cut(s) | 73, 873, 2185, 4460 |
| SpeI | ACTAGT | 2 cut(s) | 1088, 3115 |
| SphI | GCATGC | 3 cut(s) | 1079, 4132, 4676 |
| SseBI | AGGCCT | 2 cut(s) | 2050, 4115 |
| SspI | AATATT | 3 cut(s) | 3703, 3719, 5039 |
| SstI | GAGCTC | 1 cut(s) | 3289 |
| StuI | AGGCCT | 2 cut(s) | 2050, 4115 |
| StyI | CCWWGG | 5 cut(s) | 2096, 2248, 3403, 4167, 4509 |
| TaiI | ACGT | 7 cut(s) | 109, 227, 298, 1629, 2005, 3136, 4655 |
| TatI | WGTACW | 2 cut(s) | 2769, 3595 |
| TauI | GCSGC | 7 cut(s) | 24, 358, 380, 3097, 3391, 4661, 5002 |
| TspGWI | ACGGA | 2 cut(s) | 107, 3939 |
| Tth111I | GACNNNGTC | 1 cut(s) | 4037 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 5017 |
| VneI | GTGCAC | 2 cut(s) | 979, 2180 |
| VpaK11BI | GGWCC | 4 cut(s) | 1066, 2496, 3913, 4208 |
| VspI | ATTAAT | 2 cut(s) | 888, 3183 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 3457, 4155 |
| XapI | RAATTY | 8 cut(s) | 412, 421, 928, 1854, 2286, 3074, 3218, 3777 |
| XbaI | TCTAGA | 1 cut(s) | 98 |
| XceI | RCATGY | 9 cut(s) | 115, 1046, 1079, 2423, 3575, 4132, 4352, 4676, 4724 |
| XhoI | CTCGAG | 2 cut(s) | 73, 2185 |
| XmiI | GTMKAC | 1 cut(s) | 1623 |
| ZraI | GACGTC | 1 cut(s) | 296 |