U5 small nuclear ribonucleoprotein 200 kDa
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Helicase_PWI | PF18149 | 224 - 333 | 3.2e-29 | N-terminal helicase PWI domain |
| ResIII | PF04851 | 452 - 607 | 6.5e-06 | Type III restriction enzyme, res subunit |
| DEAD | PF00270 | 455 - 611 | 6.8e-20 | DEAD/DEAH box helicase |
| Helicase_C | PF00271 | 711 - 809 | 2.7e-10 | Helicase conserved C-terminal domain |
| WHD_SNRNP200 | PF23445 | 840 - 916 | 1.4e-21 | Winged Helix-turn-helix domain |
| Sec63 | PF02889 | 932 - 1235 | 2.1e-96 | Sec63 Brl domain |
| ResIII | PF04851 | 1278 - 1423 | 2.3e-09 | Type III restriction enzyme, res subunit |
| DEAD | PF00270 | 1281 - 1454 | 8e-25 | DEAD/DEAH box helicase |
| WHD_SNRNP200 | PF23445 | 1672 - 1753 | 2.3e-34 | Winged Helix-turn-helix domain |
| Sec63 | PF02889 | 1759 - 2078 | 8.8e-58 | Sec63 Brl domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 6098, 6183 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 1541, 6089 |
| Acc36I | ACCTGC | 1 cut(s) | 3736 |
| Acc65I | GGTACC | 1 cut(s) | 6027 |
| AccB1I | GGYRCC | 7 cut(s) | 201, 249, 401, 1186, 3117, 3619, 6027 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 4837, 5643 |
| AccBSI | CCGCTC | 1 cut(s) | 20 |
| AccI | GTMKAC | 3 cut(s) | 784, 4306, 5318 |
| AccII | CGCG | 6 cut(s) | 32, 34, 144, 210, 2979, 4964 |
| AclI | AACGTT | 1 cut(s) | 4080 |
| AclWI | GGATC | 7 cut(s) | 1140, 2253, 2348, 2713, 4746, 5274, 5437 |
| AcoI | YGGCCR | 2 cut(s) | 2464, 5865 |
| AcsI | RAATTY | 7 cut(s) | 61, 1701, 2918, 3449, 4055, 4606, 5951 |
| AcuI | CTGAAG | 8 cut(s) | 789, 1454, 3080, 3186, 3996, 5076, 5510, 5825 |
| AcvI | CACGTG | 3 cut(s) | 104, 115, 355 |
| AcyI | GRCGYC | 6 cut(s) | 83, 250, 297, 402, 1838, 3118 |
| AdeI | CACNNNGTG | 1 cut(s) | 2326 |
| AflIII | ACRYGT | 2 cut(s) | 2622, 4567 |
| AjiI | CACGTC | 1 cut(s) | 6019 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 2553, 2585, 3219, 3251 |
| AleI | CACNNNNGTG | 1 cut(s) | 751 |
| Alw21I | GWGCWC | 7 cut(s) | 276, 399, 1426, 1461, 3133, 3459, 3968 |
| Alw44I | GTGCAC | 1 cut(s) | 395 |
| AlwI | GGATC | 7 cut(s) | 1140, 2253, 2348, 2713, 4746, 5274, 5437 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 5686, 6164 |
| Ama87I | CYCGRG | 4 cut(s) | 214, 327, 4124, 5972 |
| AoxI | GGCC | 7 cut(s) | 191, 308, 1726, 2464, 5529, 5865, 5940 |
| ApaLI | GTGCAC | 1 cut(s) | 395 |
| ApoI | RAATTY | 7 cut(s) | 61, 1701, 2918, 3449, 4055, 4606, 5951 |
| AseI | ATTAAT | 1 cut(s) | 3027 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 2133, 2565, 3345, 3636, 5889 |
| Asp718I | GGTACC | 1 cut(s) | 6027 |
| AspLEI | GCGC | 5 cut(s) | 34, 252, 404, 3120, 4966 |
| AsuC2I | CCSGG | 5 cut(s) | 224, 328, 329, 1730, 5944 |
| AsuNHI | GCTAGC | 1 cut(s) | 763 |
| AvaI | CYCGRG | 4 cut(s) | 214, 327, 4124, 5972 |
| AvaII | GGWCC | 9 cut(s) | 73, 968, 2340, 2974, 3385, 3684, 3715, 4363, 5572 |
| BaeGI | GKGCMC | 2 cut(s) | 120, 399 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 552, 585 |
| BalI | TGGCCA | 2 cut(s) | 2466, 5867 |
| BanI | GGYRCC | 7 cut(s) | 201, 249, 401, 1186, 3117, 3619, 6027 |
| BanII | GRGCYC | 3 cut(s) | 3015, 3133, 3459 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 4979, 5011 |
| BbrPI | CACGTG | 3 cut(s) | 104, 115, 355 |
| BbsI | GAAGAC | 9 cut(s) | 297, 320, 2118, 2428, 3315, 3850, 3926, 5366, 6051 |
| Bbv12I | GWGCWC | 7 cut(s) | 276, 399, 1426, 1461, 3133, 3459, 3968 |
| BceAI | ACGGC | 6 cut(s) | 237, 263, 310, 415, 4804, 6189 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 376, 410, 1139, 1173, 2999, 3033 |
| BciVI | GTATCC | 1 cut(s) | 2774 |
| BclI | TGATCA | 4 cut(s) | 435, 2545, 3817, 5188 |
| BcnI | CCSGG | 5 cut(s) | 224, 328, 329, 1730, 5944 |
| BfmI | CTRYAG | 6 cut(s) | 1992, 4981, 5214, 5378, 5723, 6156 |
| BfoI | RGCGCY | 3 cut(s) | 253, 405, 3121 |
| BfuAI | ACCTGC | 1 cut(s) | 3736 |
| BfuI | GTATCC | 1 cut(s) | 2774 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 199 |
| BglII | AGATCT | 1 cut(s) | 3823 |
| Bme18I | GGWCC | 9 cut(s) | 73, 968, 2340, 2974, 3385, 3684, 3715, 4363, 5572 |
| BmeT110I | CYCGRG | 4 cut(s) | 214, 327, 4124, 5972 |
| BmgBI | CACGTC | 1 cut(s) | 6019 |
| BmrI | ACTGGG | 8 cut(s) | 709, 1440, 2422, 3009, 4104, 4849, 5995, 6131 |
| BmtI | GCTAGC | 1 cut(s) | 767 |
| BmuI | ACTGGG | 8 cut(s) | 709, 1440, 2422, 3009, 4104, 4849, 5995, 6131 |
| BoxI | GACNNNNGTC | 4 cut(s) | 216, 2802, 3854, 4277 |
| BpiI | GAAGAC | 9 cut(s) | 297, 320, 2118, 2428, 3315, 3850, 3926, 5366, 6051 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 4053, 4085 |
| BpmI | CTGGAG | 4 cut(s) | 4137, 4392, 5144, 5942 |
| Bpu10I | CCTNAGC | 2 cut(s) | 3680, 5105 |
| BpuEI | CTTGAG | 3 cut(s) | 2014, 5182, 5376 |
| BpuMI | CCSGG | 5 cut(s) | 224, 328, 329, 1730, 5944 |
| Bsa29I | ATCGAT | 1 cut(s) | 4771 |
| BsaAI | YACGTR | 3 cut(s) | 104, 115, 355 |
| BsaBI | GATNNNNATC | 3 cut(s) | 3597, 3822, 5271 |
| BsaHI | GRCGYC | 6 cut(s) | 83, 250, 297, 402, 1838, 3118 |
| BsaI | GGTCTC | 3 cut(s) | 317, 1766, 4073 |
| BsaWI | WCCGGW | 2 cut(s) | 837, 3469 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 501, 531, 612, 642 |
| Bse118I | RCCGGY | 2 cut(s) | 382, 1258 |
| Bse3DI | GCAATG | 5 cut(s) | 1155, 2170, 2808, 4002, 5622 |
| Bse8I | GATNNNNATC | 3 cut(s) | 3597, 3822, 5271 |
| BseCI | ATCGAT | 1 cut(s) | 4771 |
| BseJI | GATNNNNATC | 3 cut(s) | 3597, 3822, 5271 |
| BseMI | GCAATG | 5 cut(s) | 1155, 2170, 2808, 4002, 5622 |
| BseMII | CTCAG | 9 cut(s) | 123, 1367, 1614, 2923, 3119, 3741, 3866, 5727, 6099 |
| BseSI | GKGCMC | 2 cut(s) | 120, 399 |
| BseYI | CCCAGC | 4 cut(s) | 119, 917, 1082, 4730 |
| BsgI | GTGCAG | 7 cut(s) | 725, 1469, 2058, 2436, 3132, 3885, 3951 |
| Bsh1236I | CGCG | 6 cut(s) | 32, 34, 144, 210, 2979, 4964 |
| Bsh1285I | CGRYCG | 1 cut(s) | 59 |
| BshFI | GGCC | 7 cut(s) | 193, 310, 1728, 2466, 5531, 5867, 5942 |
| BshNI | GGYRCC | 7 cut(s) | 201, 249, 401, 1186, 3117, 3619, 6027 |
| BshVI | ATCGAT | 1 cut(s) | 4771 |
| BsiEI | CGRYCG | 1 cut(s) | 59 |
| BsiHKAI | GWGCWC | 7 cut(s) | 276, 399, 1426, 1461, 3133, 3459, 3968 |
| BsiHKCI | CYCGRG | 4 cut(s) | 214, 327, 4124, 5972 |
| BsiSI | CCGG | 8 cut(s) | 224, 328, 383, 838, 1259, 1730, 3470, 5943 |
| BsiWI | CGTACG | 1 cut(s) | 336 |
| BslFI | GGGAC | 7 cut(s) | 204, 936, 1646, 2353, 2894, 3728, 4178 |
| BsmBI | CGTCTC | 2 cut(s) | 1618, 5846 |
| BsmFI | GGGAC | 7 cut(s) | 204, 936, 1646, 2353, 2894, 3728, 4178 |
| BsmI | GAATGC | 3 cut(s) | 2560, 2590, 5003 |
| BsnI | GGCC | 7 cut(s) | 193, 310, 1728, 2466, 5531, 5867, 5942 |
| Bso31I | GGTCTC | 3 cut(s) | 317, 1766, 4073 |
| BsoBI | CYCGRG | 4 cut(s) | 214, 327, 4124, 5972 |
| Bsp1286I | GDGCHC | 9 cut(s) | 120, 276, 399, 1426, 1461, 3015, 3133, 3459, 3968 |
| Bsp1407I | TGTACA | 3 cut(s) | 2023, 2266, 3999 |
| Bsp19I | CCATGG | 1 cut(s) | 4107 |
| BspANI | GGCC | 7 cut(s) | 193, 310, 1728, 2466, 5531, 5867, 5942 |
| BspCNI | CTCAG | 9 cut(s) | 124, 1366, 1615, 2922, 3118, 3742, 3865, 5726, 6098 |
| BspDI | ATCGAT | 1 cut(s) | 4771 |
| BspFNI | CGCG | 6 cut(s) | 32, 34, 144, 210, 2979, 4964 |
| BspHI | TCATGA | 2 cut(s) | 682, 5503 |
| BspMAI | CTGCAG | 2 cut(s) | 5382, 6160 |
| BspMI | ACCTGC | 1 cut(s) | 3736 |
| BspOI | GCTAGC | 1 cut(s) | 767 |
| BspPI | GGATC | 7 cut(s) | 1140, 2253, 2348, 2713, 4746, 5274, 5437 |
| BspQI | GCTCTTC | 2 cut(s) | 3956, 5664 |
| BspT107I | GGYRCC | 7 cut(s) | 201, 249, 401, 1186, 3117, 3619, 6027 |
| BspTNI | GGTCTC | 3 cut(s) | 317, 1766, 4073 |
| BsrBI | CCGCTC | 1 cut(s) | 20 |
| BsrDI | GCAATG | 5 cut(s) | 1155, 2170, 2808, 4002, 5622 |
| BsrFI | RCCGGY | 2 cut(s) | 382, 1258 |
| BsrGI | TGTACA | 3 cut(s) | 2023, 2266, 3999 |
| BssAI | RCCGGY | 2 cut(s) | 382, 1258 |
| BssNAI | GTATAC | 2 cut(s) | 785, 5319 |
| BssNI | GRCGYC | 6 cut(s) | 83, 250, 297, 402, 1838, 3118 |
| BssT1I | CCWWGG | 4 cut(s) | 2092, 4107, 4366, 5284 |
| Bst1107I | GTATAC | 2 cut(s) | 785, 5319 |
| BstACI | GRCGYC | 6 cut(s) | 83, 250, 297, 402, 1838, 3118 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 2294, 3938, 5584 |
| BstAUI | TGTACA | 3 cut(s) | 2023, 2266, 3999 |
| BstBAI | YACGTR | 3 cut(s) | 104, 115, 355 |
| BstDSI | CCRYGG | 2 cut(s) | 142, 4107 |
| BstEII | GGTNACC | 2 cut(s) | 374, 1565 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3304 |
| BstFNI | CGCG | 6 cut(s) | 32, 34, 144, 210, 2979, 4964 |
| BstH2I | RGCGCY | 3 cut(s) | 253, 405, 3121 |
| BstHHI | GCGC | 5 cut(s) | 34, 252, 404, 3120, 4966 |
| BstMCI | CGRYCG | 1 cut(s) | 59 |
| BstNSI | RCATGY | 6 cut(s) | 1790, 2267, 2626, 2638, 4523, 4571 |
| BstPAI | GACNNNNGTC | 4 cut(s) | 216, 2802, 3854, 4277 |
| BstPI | GGTNACC | 2 cut(s) | 374, 1565 |
| BstSFI | CTRYAG | 6 cut(s) | 1992, 4981, 5214, 5378, 5723, 6156 |
| BstSLI | GKGCMC | 2 cut(s) | 120, 399 |
| BstUI | CGCG | 6 cut(s) | 32, 34, 144, 210, 2979, 4964 |
| BstV2I | GAAGAC | 9 cut(s) | 297, 320, 2118, 2428, 3315, 3850, 3926, 5366, 6051 |
| BstX2I | RGATCY | 3 cut(s) | 2245, 3823, 5266 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 826, 3248, 4161 |
| BstYI | RGATCY | 3 cut(s) | 2245, 3823, 5266 |
| BstZ17I | GTATAC | 2 cut(s) | 785, 5319 |
| Bsu15I | ATCGAT | 1 cut(s) | 4771 |
| BsuI | GTATCC | 1 cut(s) | 2774 |
| BsuRI | GGCC | 7 cut(s) | 193, 310, 1728, 2466, 5531, 5867, 5942 |
| BsuTUI | ATCGAT | 1 cut(s) | 4771 |
| BtgI | CCRYGG | 2 cut(s) | 142, 4107 |
| BtgZI | GCGATG | 1 cut(s) | 359 |
| BtrI | CACGTC | 1 cut(s) | 6019 |
| BtsI | GCAGTG | 5 cut(s) | 276, 1461, 2146, 2283, 3861 |
| BveI | ACCTGC | 1 cut(s) | 3736 |
| CaiI | CAGNNNCTG | 2 cut(s) | 5686, 6164 |
| CciI | TCATGA | 2 cut(s) | 682, 5503 |
| CfoI | GCGC | 5 cut(s) | 34, 252, 404, 3120, 4966 |
| Cfr10I | RCCGGY | 2 cut(s) | 382, 1258 |
| Cfr42I | CCGCGG | 1 cut(s) | 145 |
| Cfr9I | CCCGGG | 1 cut(s) | 327 |
| ClaI | ATCGAT | 1 cut(s) | 4771 |
| CseI | GACGC | 6 cut(s) | 72, 286, 1827, 4406, 5099, 5143 |
| DinI | GGCGCC | 3 cut(s) | 251, 403, 3119 |
| DraI | TTTAAA | 2 cut(s) | 2865, 4765 |
| DraIII | CACNNNGTG | 1 cut(s) | 2326 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 1541, 6089 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 1541, 6089 |
| EaeI | YGGCCR | 2 cut(s) | 2464, 5865 |
| EciI | GGCGGA | 3 cut(s) | 633, 1781, 4272 |
| Ecl136II | GAGCTC | 2 cut(s) | 3131, 3457 |
| Eco130I | CCWWGG | 4 cut(s) | 2092, 4107, 4366, 5284 |
| Eco24I | GRGCYC | 3 cut(s) | 3015, 3133, 3459 |
| Eco31I | GGTCTC | 3 cut(s) | 317, 1766, 4073 |
| Eco32I | GATATC | 1 cut(s) | 5044 |
| Eco47I | GGWCC | 9 cut(s) | 73, 968, 2340, 2974, 3385, 3684, 3715, 4363, 5572 |
| Eco53kI | GAGCTC | 2 cut(s) | 3131, 3457 |
| Eco57I | CTGAAG | 8 cut(s) | 789, 1454, 3080, 3186, 3996, 5076, 5510, 5825 |
| Eco72I | CACGTG | 3 cut(s) | 104, 115, 355 |
| Eco88I | CYCGRG | 4 cut(s) | 214, 327, 4124, 5972 |
| Eco91I | GGTNACC | 2 cut(s) | 374, 1565 |
| EcoICRI | GAGCTC | 2 cut(s) | 3131, 3457 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3304 |
| EcoO109I | RGGNCCY | 3 cut(s) | 968, 3715, 4363 |
| EcoO65I | GGTNACC | 2 cut(s) | 374, 1565 |
| EcoRI | GAATTC | 2 cut(s) | 61, 5951 |
| EcoRV | GATATC | 1 cut(s) | 5044 |
| EcoT14I | CCWWGG | 4 cut(s) | 2092, 4107, 4366, 5284 |
| EcoT22I | ATGCAT | 1 cut(s) | 3834 |
| EcoT38I | GRGCYC | 3 cut(s) | 3015, 3133, 3459 |
| EgeI | GGCGCC | 3 cut(s) | 251, 403, 3119 |
| EheI | GGCGCC | 3 cut(s) | 251, 403, 3119 |
| ErhI | CCWWGG | 4 cut(s) | 2092, 4107, 4366, 5284 |
| Esp3I | CGTCTC | 2 cut(s) | 1618, 5846 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 4200, 4232 |
| FaqI | GGGAC | 7 cut(s) | 204, 936, 1646, 2353, 2894, 3728, 4178 |
| FauI | CCCGC | 3 cut(s) | 607, 2047, 4929 |
| FauNDI | CATATG | 2 cut(s) | 2188, 3926 |
| FbaI | TGATCA | 4 cut(s) | 435, 2545, 3817, 5188 |
| FblI | GTMKAC | 3 cut(s) | 784, 4306, 5318 |
| FriOI | GRGCYC | 3 cut(s) | 3015, 3133, 3459 |
| GlaI | GCGC | 5 cut(s) | 33, 251, 403, 3119, 4965 |
| GsaI | CCCAGC | 4 cut(s) | 123, 921, 1086, 4734 |
| GsuI | CTGGAG | 4 cut(s) | 4137, 4392, 5144, 5942 |
| HaeII | RGCGCY | 3 cut(s) | 253, 405, 3121 |
| HaeIII | GGCC | 7 cut(s) | 193, 310, 1728, 2466, 5531, 5867, 5942 |
| HapII | CCGG | 8 cut(s) | 224, 328, 383, 838, 1259, 1730, 3470, 5943 |
| HgaI | GACGC | 6 cut(s) | 72, 286, 1827, 4406, 5099, 5143 |
| HhaI | GCGC | 5 cut(s) | 34, 252, 404, 3120, 4966 |
| Hin1I | GRCGYC | 6 cut(s) | 83, 250, 297, 402, 1838, 3118 |
| Hin6I | GCGC | 5 cut(s) | 32, 250, 402, 3118, 4964 |
| HinP1I | GCGC | 5 cut(s) | 32, 250, 402, 3118, 4964 |
| HincII | GTYRAC | 5 cut(s) | 1093, 2610, 4042, 4307, 6126 |
| HindII | GTYRAC | 5 cut(s) | 1093, 2610, 4042, 4307, 6126 |
| HindIII | AAGCTT | 8 cut(s) | 163, 1682, 2595, 3062, 4757, 5394, 6077, 6185 |
| HpaI | GTTAAC | 1 cut(s) | 2610 |
| HpaII | CCGG | 8 cut(s) | 224, 328, 383, 838, 1259, 1730, 3470, 5943 |
| HpyCH4IV | ACGT | 6 cut(s) | 103, 114, 354, 4080, 4551, 6018 |
| HpySE526I | ACGT | 6 cut(s) | 103, 114, 354, 4080, 4551, 6018 |
| Hsp92I | GRCGYC | 6 cut(s) | 83, 250, 297, 402, 1838, 3118 |
| HspAI | GCGC | 5 cut(s) | 32, 250, 402, 3118, 4964 |
| KasI | GGCGCC | 3 cut(s) | 249, 401, 3117 |
| KpnI | GGTACC | 1 cut(s) | 6031 |
| KroI | GCCGGC | 2 cut(s) | 382, 1258 |
| KroNI | GCCGGC | 2 cut(s) | 384, 1260 |
| Ksp22I | TGATCA | 4 cut(s) | 435, 2545, 3817, 5188 |
| KspAI | GTTAAC | 1 cut(s) | 2610 |
| KspI | CCGCGG | 1 cut(s) | 145 |
| LguI | GCTCTTC | 2 cut(s) | 3956, 5664 |
| MaeII | ACGT | 6 cut(s) | 103, 114, 354, 4080, 4551, 6018 |
| MbiI | CCGCTC | 1 cut(s) | 20 |
| MfeI | CAATTG | 7 cut(s) | 984, 2549, 2985, 4020, 4509, 5021, 6144 |
| MflI | RGATCY | 3 cut(s) | 2245, 3823, 5266 |
| MhlI | GDGCHC | 9 cut(s) | 120, 276, 399, 1426, 1461, 3015, 3133, 3459, 3968 |
| MlsI | TGGCCA | 2 cut(s) | 2466, 5867 |
| MluNI | TGGCCA | 2 cut(s) | 2466, 5867 |
| Mly113I | GGCGCC | 3 cut(s) | 250, 402, 3118 |
| MmeI | TCCRAC | 3 cut(s) | 114, 2676, 4597 |
| Mox20I | TGGCCA | 2 cut(s) | 2466, 5867 |
| Mph1103I | ATGCAT | 1 cut(s) | 3834 |
| MroNI | GCCGGC | 2 cut(s) | 382, 1258 |
| MroXI | GAANNNNTTC | 5 cut(s) | 2133, 2565, 3345, 3636, 5889 |
| MscI | TGGCCA | 2 cut(s) | 2466, 5867 |
| MslI | CAYNNNNRTG | 2 cut(s) | 751, 3501 |
| Msp20I | TGGCCA | 2 cut(s) | 2466, 5867 |
| MspA1I | CMGCKG | 8 cut(s) | 52, 123, 144, 367, 1403, 2054, 2118, 3058 |
| MspI | CCGG | 8 cut(s) | 224, 328, 383, 838, 1259, 1730, 3470, 5943 |
| MunI | CAATTG | 7 cut(s) | 984, 2549, 2985, 4020, 4509, 5021, 6144 |
| Mva1269I | GAATGC | 3 cut(s) | 2560, 2590, 5003 |
| MvnI | CGCG | 6 cut(s) | 32, 34, 144, 210, 2979, 4964 |
| NaeI | GCCGGC | 2 cut(s) | 384, 1260 |
| NarI | GGCGCC | 3 cut(s) | 250, 402, 3118 |
| NciI | CCSGG | 5 cut(s) | 224, 328, 329, 1730, 5944 |
| NcoI | CCATGG | 1 cut(s) | 4107 |
| NdeI | CATATG | 2 cut(s) | 2188, 3926 |
| NgoMIV | GCCGGC | 2 cut(s) | 382, 1258 |
| NheI | GCTAGC | 1 cut(s) | 763 |
| NmeAIII | GCCGAG | 1 cut(s) | 4051 |
| NsiI | ATGCAT | 1 cut(s) | 3834 |
| NspI | RCATGY | 6 cut(s) | 1790, 2267, 2626, 2638, 4523, 4571 |
| OliI | CACNNNNGTG | 1 cut(s) | 751 |
| PaeI | GCATGC | 1 cut(s) | 2638 |
| PaeR7I | CTCGAG | 2 cut(s) | 4124, 5972 |
| PagI | TCATGA | 2 cut(s) | 682, 5503 |
| PasI | CCCWGGG | 1 cut(s) | 5692 |
| PciI | ACATGT | 2 cut(s) | 2622, 4567 |
| PciSI | GCTCTTC | 2 cut(s) | 3956, 5664 |
| PcsI | WCGNNNNNNNCGW | 6 cut(s) | 405, 453, 459, 462, 465, 468 |
| PctI | GAATGC | 3 cut(s) | 2560, 2590, 5003 |
| PdiI | GCCGGC | 2 cut(s) | 384, 1260 |
| PdmI | GAANNNNTTC | 5 cut(s) | 2133, 2565, 3345, 3636, 5889 |
| Pfl23II | CGTACG | 1 cut(s) | 336 |
| PflFI | GACNNNGTC | 2 cut(s) | 296, 4616 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 4837, 5643 |
| PfoI | TCCNGGA | 1 cut(s) | 5773 |
| Ple19I | CGATCG | 1 cut(s) | 59 |
| PluTI | GGCGCC | 3 cut(s) | 253, 405, 3121 |
| PmaCI | CACGTG | 3 cut(s) | 104, 115, 355 |
| PmlI | CACGTG | 3 cut(s) | 104, 115, 355 |
| Ppu21I | YACGTR | 3 cut(s) | 104, 115, 355 |
| PpuMI | RGGWCCY | 3 cut(s) | 968, 3715, 4363 |
| PscI | ACATGT | 2 cut(s) | 2622, 4567 |
| PshAI | GACNNNNGTC | 4 cut(s) | 216, 2802, 3854, 4277 |
| PshBI | ATTAAT | 1 cut(s) | 3027 |
| PsiI | TTATAA | 2 cut(s) | 6098, 6183 |
| Psp124BI | GAGCTC | 2 cut(s) | 3133, 3459 |
| Psp1406I | AACGTT | 1 cut(s) | 4080 |
| Psp5II | RGGWCCY | 3 cut(s) | 968, 3715, 4363 |
| PspCI | CACGTG | 3 cut(s) | 104, 115, 355 |
| PspEI | GGTNACC | 2 cut(s) | 374, 1565 |
| PspFI | CCCAGC | 4 cut(s) | 119, 917, 1082, 4730 |
| PspLI | CGTACG | 1 cut(s) | 336 |
| PspPPI | RGGWCCY | 3 cut(s) | 968, 3715, 4363 |
| PspXI | VCTCGAGB | 1 cut(s) | 4124 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 5403, 5435 |
| PstI | CTGCAG | 2 cut(s) | 5382, 6160 |
| PstNI | CAGNNNCTG | 2 cut(s) | 5686, 6164 |
| PsuI | RGATCY | 3 cut(s) | 2245, 3823, 5266 |
| PsyI | GACNNNGTC | 2 cut(s) | 296, 4616 |
| PvuI | CGATCG | 1 cut(s) | 59 |
| PvuII | CAGCTG | 3 cut(s) | 52, 367, 3058 |
| RseI | CAYNNNNRTG | 2 cut(s) | 751, 3501 |
| SacI | GAGCTC | 2 cut(s) | 3133, 3459 |
| SacII | CCGCGG | 1 cut(s) | 145 |
| SalI | GTCGAC | 1 cut(s) | 4305 |
| SapI | GCTCTTC | 2 cut(s) | 3956, 5664 |
| SduI | GDGCHC | 9 cut(s) | 120, 276, 399, 1426, 1461, 3015, 3133, 3459, 3968 |
| SfcI | CTRYAG | 6 cut(s) | 1992, 4981, 5214, 5378, 5723, 6156 |
| SfoI | GGCGCC | 3 cut(s) | 251, 403, 3119 |
| Sfr274I | CTCGAG | 2 cut(s) | 4124, 5972 |
| Sfr303I | CCGCGG | 1 cut(s) | 145 |
| SgrBI | CCGCGG | 1 cut(s) | 145 |
| SinI | GGWCC | 9 cut(s) | 73, 968, 2340, 2974, 3385, 3684, 3715, 4363, 5572 |
| SlaI | CTCGAG | 2 cut(s) | 4124, 5972 |
| SmaI | CCCGGG | 1 cut(s) | 329 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 751, 3501 |
| SmlI | CTYRAG | 5 cut(s) | 2029, 4124, 5197, 5391, 5972 |
| SmoI | CTYRAG | 5 cut(s) | 2029, 4124, 5197, 5391, 5972 |
| SphI | GCATGC | 1 cut(s) | 2638 |
| SspDI | GGCGCC | 3 cut(s) | 249, 401, 3117 |
| SspI | AATATT | 3 cut(s) | 1411, 3566, 3650 |
| SstI | GAGCTC | 2 cut(s) | 3133, 3459 |
| StyI | CCWWGG | 4 cut(s) | 2092, 4107, 4366, 5284 |
| TaiI | ACGT | 6 cut(s) | 106, 117, 357, 4083, 4554, 6021 |
| TaqII | GACCGA | 1 cut(s) | 2357 |
| TatI | WGTACW | 5 cut(s) | 899, 1524, 2023, 2266, 3999 |
| TauI | GCSGC | 5 cut(s) | 126, 147, 210, 407, 2941 |
| TspGWI | ACGGA | 5 cut(s) | 299, 3647, 3786, 4204, 5870 |
| TspMI | CCCGGG | 1 cut(s) | 327 |
| Tth111I | GACNNNGTC | 2 cut(s) | 296, 4616 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 4837, 5643 |
| VneI | GTGCAC | 1 cut(s) | 395 |
| VpaK11BI | GGWCC | 9 cut(s) | 73, 968, 2340, 2974, 3385, 3684, 3715, 4363, 5572 |
| VspI | ATTAAT | 1 cut(s) | 3027 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3304 |
| XapI | RAATTY | 7 cut(s) | 61, 1701, 2918, 3449, 4055, 4606, 5951 |
| XbaI | TCTAGA | 2 cut(s) | 4283, 5540 |
| XceI | RCATGY | 6 cut(s) | 1790, 2267, 2626, 2638, 4523, 4571 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 4244, 4862, 5771 |
| XhoI | CTCGAG | 2 cut(s) | 4124, 5972 |
| XmaI | CCCGGG | 1 cut(s) | 327 |
| XmiI | GTMKAC | 3 cut(s) | 784, 4306, 5318 |
| XmnI | GAANNNNTTC | 5 cut(s) | 2133, 2565, 3345, 3636, 5889 |
| Zsp2I | ATGCAT | 1 cut(s) | 3834 |