U5 small nuclear ribonucleoprotein 200 kDa
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DEAD | PF00270 | 11 - 96 | 1.7e-12 | DEAD/DEAH box helicase |
| Helicase_C | PF00271 | 196 - 294 | 1.9e-10 | Helicase conserved C-terminal domain |
| WHD_SNRNP200 | PF23445 | 325 - 401 | 1e-21 | Winged Helix-turn-helix domain |
| Sec63 | PF02889 | 417 - 720 | 3.7e-96 | Sec63 Brl domain |
| ResIII | PF04851 | 763 - 908 | 1.5e-09 | Type III restriction enzyme, res subunit |
| DEAD | PF00270 | 766 - 939 | 1.2e-25 | DEAD/DEAH box helicase |
| WHD_SNRNP200 | PF23445 | 1157 - 1238 | 5.7e-34 | Winged Helix-turn-helix domain |
| Sec63 | PF02889 | 1244 - 1563 | 4.3e-58 | Sec63 Brl domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 4553, 4638 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 4544 |
| Acc36I | ACCTGC | 1 cut(s) | 2191 |
| Acc65I | GGTACC | 1 cut(s) | 4482 |
| AccB1I | GGYRCC | 4 cut(s) | 1472, 1572, 2074, 4482 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 3292, 4098 |
| AccI | GTMKAC | 2 cut(s) | 2761, 3773 |
| AccII | CGCG | 2 cut(s) | 1434, 3419 |
| AclI | AACGTT | 1 cut(s) | 2535 |
| AclWI | GGATC | 6 cut(s) | 708, 803, 1168, 3201, 3729, 3892 |
| AcoI | YGGCCR | 2 cut(s) | 919, 4320 |
| AcsI | RAATTY | 6 cut(s) | 156, 1373, 1904, 2510, 3061, 4406 |
| AcuI | CTGAAG | 6 cut(s) | 1535, 1641, 2451, 3531, 3965, 4280 |
| AcyI | GRCGYC | 2 cut(s) | 293, 1573 |
| AdeI | CACNNNGTG | 1 cut(s) | 781 |
| AfaI | GTAC | 8 cut(s) | 407, 480, 723, 1437, 2456, 3005, 3452, 4484 |
| AflIII | ACRYGT | 2 cut(s) | 1077, 3022 |
| AhlI | ACTAGT | 1 cut(s) | 2662 |
| AjiI | CACGTC | 1 cut(s) | 4474 |
| AjnI | CCWGG | 9 cut(s) | 98, 249, 1242, 1458, 1754, 2863, 3880, 4146, 4228 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1008, 1040, 1674, 1706 |
| Alw21I | GWGCWC | 3 cut(s) | 1588, 1914, 2423 |
| Alw26I | GTCTC | 9 cut(s) | 47, 73, 221, 2138, 2528, 2720, 2740, 2740, 4301 |
| AlwI | GGATC | 6 cut(s) | 708, 803, 1168, 3201, 3729, 3892 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 4141, 4619 |
| Ama87I | CYCGRG | 2 cut(s) | 2579, 4427 |
| AoxI | GGCC | 5 cut(s) | 181, 919, 3984, 4320, 4395 |
| ApeKI | GCWGC | 7 cut(s) | 1184, 1492, 1868, 1879, 2354, 3379, 4604 |
| ApoI | RAATTY | 6 cut(s) | 156, 1373, 1904, 2510, 3061, 4406 |
| AseI | ATTAAT | 1 cut(s) | 1482 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 588, 1020, 1800, 2091, 4344 |
| Asp718I | GGTACC | 1 cut(s) | 4482 |
| AspLEI | GCGC | 2 cut(s) | 1575, 3421 |
| AspS9I | GGNCC | 9 cut(s) | 182, 795, 1429, 1840, 2139, 2170, 2818, 3985, 4027 |
| AsuC2I | CCSGG | 2 cut(s) | 1470, 4399 |
| AvaI | CYCGRG | 2 cut(s) | 2579, 4427 |
| AvaII | GGWCC | 7 cut(s) | 795, 1429, 1840, 2139, 2170, 2818, 4027 |
| BalI | TGGCCA | 2 cut(s) | 921, 4322 |
| BanI | GGYRCC | 4 cut(s) | 1472, 1572, 2074, 4482 |
| BanII | GRGCYC | 3 cut(s) | 1470, 1588, 1914 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 3434, 3466 |
| BbsI | GAAGAC | 6 cut(s) | 573, 883, 2305, 2381, 3821, 4506 |
| Bbv12I | GWGCWC | 3 cut(s) | 1588, 1914, 2423 |
| BbvI | GCAGC | 7 cut(s) | 1171, 1479, 1880, 1891, 2341, 3391, 4591 |
| BceAI | ACGGC | 2 cut(s) | 3259, 4644 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1454, 1488 |
| BciT130I | CCWGG | 9 cut(s) | 100, 251, 1244, 1460, 1756, 2865, 3882, 4148, 4230 |
| BciVI | GTATCC | 1 cut(s) | 1229 |
| BclI | TGATCA | 3 cut(s) | 1000, 2272, 3643 |
| BcnI | CCSGG | 2 cut(s) | 1470, 4399 |
| BcoDI | GTCTC | 9 cut(s) | 47, 73, 221, 2138, 2528, 2720, 2740, 2740, 4301 |
| BcuI | ACTAGT | 1 cut(s) | 2662 |
| BfaI | CTAG | 8 cut(s) | 1044, 1790, 2663, 2739, 3842, 3996, 4118, 4376 |
| BfmI | CTRYAG | 6 cut(s) | 447, 3436, 3669, 3833, 4178, 4611 |
| BfoI | RGCGCY | 1 cut(s) | 1576 |
| BfuAI | ACCTGC | 1 cut(s) | 2191 |
| BfuI | GTATCC | 1 cut(s) | 1229 |
| BglII | AGATCT | 1 cut(s) | 2278 |
| BisI | GCNGC | 8 cut(s) | 1185, 1394, 1493, 1869, 1880, 2355, 3380, 4605 |
| BlsI | GCNGC | 8 cut(s) | 1186, 1395, 1494, 1870, 1881, 2356, 3381, 4606 |
| Bme18I | GGWCC | 7 cut(s) | 795, 1429, 1840, 2139, 2170, 2818, 4027 |
| BmeT110I | CYCGRG | 2 cut(s) | 2579, 4427 |
| BmgBI | CACGTC | 1 cut(s) | 4474 |
| BmgT120I | GGNCC | 9 cut(s) | 182, 795, 1429, 1840, 2139, 2170, 2818, 3985, 4027 |
| BmiI | GGNNCC | 8 cut(s) | 796, 1474, 1574, 1965, 2076, 2171, 3307, 4484 |
| BmrI | ACTGGG | 5 cut(s) | 179, 2559, 3304, 4450, 4586 |
| BmsI | GCATC | 9 cut(s) | 1547, 2461, 2830, 3714, 4128, 4205, 4294, 4606, 4661 |
| BmuI | ACTGGG | 5 cut(s) | 179, 2559, 3304, 4450, 4586 |
| BoxI | GACNNNNGTC | 3 cut(s) | 1257, 2309, 2732 |
| BpiI | GAAGAC | 6 cut(s) | 573, 883, 2305, 2381, 3821, 4506 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2508, 2540 |
| BpmI | CTGGAG | 2 cut(s) | 2592, 2847 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2135 |
| BpuEI | CTTGAG | 3 cut(s) | 469, 3637, 3831 |
| BpuMI | CCSGG | 2 cut(s) | 1470, 4399 |
| Bsa29I | ATCGAT | 1 cut(s) | 3226 |
| BsaBI | GATNNNNATC | 3 cut(s) | 2052, 2277, 3726 |
| BsaHI | GRCGYC | 2 cut(s) | 293, 1573 |
| BsaI | GGTCTC | 2 cut(s) | 221, 2528 |
| BsaWI | WCCGGW | 1 cut(s) | 1924 |
| Bse3DI | GCAATG | 4 cut(s) | 625, 1263, 2457, 4077 |
| Bse8I | GATNNNNATC | 3 cut(s) | 2052, 2277, 3726 |
| BseBI | CCWGG | 9 cut(s) | 100, 251, 1244, 1460, 1756, 2865, 3882, 4148, 4230 |
| BseCI | ATCGAT | 1 cut(s) | 3226 |
| BseGI | GGATG | 9 cut(s) | 1405, 1619, 1674, 2053, 2689, 2937, 3718, 4279, 4676 |
| BseJI | GATNNNNATC | 3 cut(s) | 2052, 2277, 3726 |
| BseMI | GCAATG | 4 cut(s) | 625, 1263, 2457, 4077 |
| BseMII | CTCAG | 8 cut(s) | 69, 896, 1378, 1574, 2196, 2321, 4182, 4554 |
| BseRI | GAGGAG | 1 cut(s) | 1169 |
| BseXI | GCAGC | 7 cut(s) | 1171, 1479, 1880, 1891, 2341, 3391, 4591 |
| BseYI | CCCAGC | 1 cut(s) | 3185 |
| BsgI | GTGCAG | 5 cut(s) | 513, 891, 1587, 2340, 2406 |
| Bsh1236I | CGCG | 2 cut(s) | 1434, 3419 |
| BshFI | GGCC | 5 cut(s) | 183, 921, 3986, 4322, 4397 |
| BshNI | GGYRCC | 4 cut(s) | 1472, 1572, 2074, 4482 |
| BshVI | ATCGAT | 1 cut(s) | 3226 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1588, 1914, 2423 |
| BsiHKCI | CYCGRG | 2 cut(s) | 2579, 4427 |
| BsiSI | CCGG | 3 cut(s) | 1470, 1925, 4398 |
| BslFI | GGGAC | 5 cut(s) | 101, 808, 1349, 2183, 2633 |
| BsmAI | GTCTC | 9 cut(s) | 47, 73, 221, 2138, 2528, 2720, 2740, 2740, 4301 |
| BsmBI | CGTCTC | 2 cut(s) | 73, 4301 |
| BsmFI | GGGAC | 5 cut(s) | 101, 808, 1349, 2183, 2633 |
| BsmI | GAATGC | 3 cut(s) | 1015, 1045, 3458 |
| BsnI | GGCC | 5 cut(s) | 183, 921, 3986, 4322, 4397 |
| Bso31I | GGTCTC | 2 cut(s) | 221, 2528 |
| BsoBI | CYCGRG | 2 cut(s) | 2579, 4427 |
| Bsp1286I | GDGCHC | 4 cut(s) | 1470, 1588, 1914, 2423 |
| Bsp1407I | TGTACA | 3 cut(s) | 478, 721, 2454 |
| Bsp19I | CCATGG | 2 cut(s) | 2562, 3616 |
| BspANI | GGCC | 5 cut(s) | 183, 921, 3986, 4322, 4397 |
| BspCNI | CTCAG | 8 cut(s) | 70, 895, 1377, 1573, 2197, 2320, 4181, 4553 |
| BspDI | ATCGAT | 1 cut(s) | 3226 |
| BspFNI | CGCG | 2 cut(s) | 1434, 3419 |
| BspHI | TCATGA | 1 cut(s) | 3958 |
| BspLI | GGNNCC | 8 cut(s) | 796, 1474, 1574, 1965, 2076, 2171, 3307, 4484 |
| BspMAI | CTGCAG | 2 cut(s) | 3837, 4615 |
| BspMI | ACCTGC | 1 cut(s) | 2191 |
| BspPI | GGATC | 6 cut(s) | 708, 803, 1168, 3201, 3729, 3892 |
| BspQI | GCTCTTC | 2 cut(s) | 2411, 4119 |
| BspT107I | GGYRCC | 4 cut(s) | 1472, 1572, 2074, 4482 |
| BspTNI | GGTCTC | 2 cut(s) | 221, 2528 |
| BsrDI | GCAATG | 4 cut(s) | 625, 1263, 2457, 4077 |
| BsrGI | TGTACA | 3 cut(s) | 478, 721, 2454 |
| BssNAI | GTATAC | 1 cut(s) | 3774 |
| BssNI | GRCGYC | 2 cut(s) | 293, 1573 |
| BssT1I | CCWWGG | 5 cut(s) | 547, 2562, 2821, 3616, 3739 |
| Bst1107I | GTATAC | 1 cut(s) | 3774 |
| Bst2UI | CCWGG | 9 cut(s) | 100, 251, 1244, 1460, 1756, 2865, 3882, 4148, 4230 |
| Bst6I | CTCTTC | 7 cut(s) | 45, 1783, 2097, 2411, 3885, 4119, 4472 |
| BstACI | GRCGYC | 2 cut(s) | 293, 1573 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 749, 2393, 4039 |
| BstAUI | TGTACA | 3 cut(s) | 478, 721, 2454 |
| BstC8I | GCNNGC | 7 cut(s) | 750, 771, 1091, 1164, 1497, 2845, 4020 |
| BstDSI | CCRYGG | 2 cut(s) | 2562, 3616 |
| BstEII | GGTNACC | 1 cut(s) | 20 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1759 |
| BstF5I | GGATG | 9 cut(s) | 1405, 1619, 1674, 2053, 2689, 2937, 3718, 4279, 4676 |
| BstFNI | CGCG | 2 cut(s) | 1434, 3419 |
| BstH2I | RGCGCY | 1 cut(s) | 1576 |
| BstHHI | GCGC | 2 cut(s) | 1575, 3421 |
| BstMAI | GTCTC | 9 cut(s) | 47, 73, 221, 2138, 2528, 2720, 2740, 2740, 4301 |
| BstNI | CCWGG | 9 cut(s) | 100, 251, 1244, 1460, 1756, 2865, 3882, 4148, 4230 |
| BstNSI | RCATGY | 6 cut(s) | 245, 722, 1081, 1093, 2978, 3026 |
| BstPAI | GACNNNNGTC | 3 cut(s) | 1257, 2309, 2732 |
| BstPI | GGTNACC | 1 cut(s) | 20 |
| BstSFI | CTRYAG | 6 cut(s) | 447, 3436, 3669, 3833, 4178, 4611 |
| BstUI | CGCG | 2 cut(s) | 1434, 3419 |
| BstV1I | GCAGC | 7 cut(s) | 1171, 1479, 1880, 1891, 2341, 3391, 4591 |
| BstV2I | GAAGAC | 6 cut(s) | 573, 883, 2305, 2381, 3821, 4506 |
| BstX2I | RGATCY | 3 cut(s) | 700, 2278, 3721 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1703, 2616 |
| BstYI | RGATCY | 3 cut(s) | 700, 2278, 3721 |
| BstZ17I | GTATAC | 1 cut(s) | 3774 |
| Bsu15I | ATCGAT | 1 cut(s) | 3226 |
| BsuI | GTATCC | 1 cut(s) | 1229 |
| BsuRI | GGCC | 5 cut(s) | 183, 921, 3986, 4322, 4397 |
| BsuTUI | ATCGAT | 1 cut(s) | 3226 |
| BtgI | CCRYGG | 2 cut(s) | 2562, 3616 |
| BtrI | CACGTC | 1 cut(s) | 4474 |
| BtsCI | GGATG | 9 cut(s) | 1405, 1619, 1674, 2053, 2689, 2937, 3718, 4279, 4676 |
| BtsI | GCAGTG | 3 cut(s) | 601, 738, 2316 |
| BveI | ACCTGC | 1 cut(s) | 2191 |
| Cac8I | GCNNGC | 7 cut(s) | 750, 771, 1091, 1164, 1497, 2845, 4020 |
| CaiI | CAGNNNCTG | 2 cut(s) | 4141, 4619 |
| CciI | TCATGA | 1 cut(s) | 3958 |
| CfoI | GCGC | 2 cut(s) | 1575, 3421 |
| Cfr13I | GGNCC | 9 cut(s) | 182, 795, 1429, 1840, 2139, 2170, 2818, 3985, 4027 |
| ClaI | ATCGAT | 1 cut(s) | 3226 |
| CseI | GACGC | 4 cut(s) | 282, 2861, 3554, 3598 |
| Csp6I | GTAC | 8 cut(s) | 406, 479, 722, 1436, 2455, 3004, 3451, 4483 |
| CviQI | GTAC | 8 cut(s) | 406, 479, 722, 1436, 2455, 3004, 3451, 4483 |
| DinI | GGCGCC | 1 cut(s) | 1574 |
| DraI | TTTAAA | 2 cut(s) | 1320, 3220 |
| DraIII | CACNNNGTG | 1 cut(s) | 781 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 4544 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 4544 |
| EaeI | YGGCCR | 2 cut(s) | 919, 4320 |
| Eam1104I | CTCTTC | 7 cut(s) | 45, 1783, 2097, 2411, 3885, 4119, 4472 |
| EarI | CTCTTC | 7 cut(s) | 45, 1783, 2097, 2411, 3885, 4119, 4472 |
| EciI | GGCGGA | 2 cut(s) | 236, 2727 |
| Ecl136II | GAGCTC | 2 cut(s) | 1586, 1912 |
| Eco130I | CCWWGG | 5 cut(s) | 547, 2562, 2821, 3616, 3739 |
| Eco24I | GRGCYC | 3 cut(s) | 1470, 1588, 1914 |
| Eco31I | GGTCTC | 2 cut(s) | 221, 2528 |
| Eco32I | GATATC | 1 cut(s) | 3499 |
| Eco47I | GGWCC | 7 cut(s) | 795, 1429, 1840, 2139, 2170, 2818, 4027 |
| Eco53kI | GAGCTC | 2 cut(s) | 1586, 1912 |
| Eco57I | CTGAAG | 6 cut(s) | 1535, 1641, 2451, 3531, 3965, 4280 |
| Eco88I | CYCGRG | 2 cut(s) | 2579, 4427 |
| Eco91I | GGTNACC | 1 cut(s) | 20 |
| EcoICRI | GAGCTC | 2 cut(s) | 1586, 1912 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1759 |
| EcoO109I | RGGNCCY | 2 cut(s) | 2170, 2818 |
| EcoO65I | GGTNACC | 1 cut(s) | 20 |
| EcoRI | GAATTC | 1 cut(s) | 4406 |
| EcoRII | CCWGG | 9 cut(s) | 98, 249, 1242, 1458, 1754, 2863, 3880, 4146, 4228 |
| EcoRV | GATATC | 1 cut(s) | 3499 |
| EcoT14I | CCWWGG | 5 cut(s) | 547, 2562, 2821, 3616, 3739 |
| EcoT22I | ATGCAT | 1 cut(s) | 2289 |
| EcoT38I | GRGCYC | 3 cut(s) | 1470, 1588, 1914 |
| EgeI | GGCGCC | 1 cut(s) | 1574 |
| EheI | GGCGCC | 1 cut(s) | 1574 |
| ErhI | CCWWGG | 5 cut(s) | 547, 2562, 2821, 3616, 3739 |
| Esp3I | CGTCTC | 2 cut(s) | 73, 4301 |
| FaqI | GGGAC | 5 cut(s) | 101, 808, 1349, 2183, 2633 |
| FauI | CCCGC | 2 cut(s) | 502, 3384 |
| FauNDI | CATATG | 2 cut(s) | 643, 2381 |
| FbaI | TGATCA | 3 cut(s) | 1000, 2272, 3643 |
| FblI | GTMKAC | 2 cut(s) | 2761, 3773 |
| Fnu4HI | GCNGC | 8 cut(s) | 1185, 1394, 1493, 1869, 1880, 2355, 3380, 4605 |
| FokI | GGATG | 9 cut(s) | 1412, 1626, 1681, 2060, 2696, 2944, 3725, 4286, 4683 |
| FriOI | GRGCYC | 3 cut(s) | 1470, 1588, 1914 |
| Fsp4HI | GCNGC | 8 cut(s) | 1185, 1394, 1493, 1869, 1880, 2355, 3380, 4605 |
| FspBI | CTAG | 8 cut(s) | 1044, 1790, 2663, 2739, 3842, 3996, 4118, 4376 |
| GlaI | GCGC | 2 cut(s) | 1574, 3420 |
| GluI | GCNGC | 8 cut(s) | 1185, 1394, 1493, 1869, 1880, 2355, 3380, 4605 |
| GsaI | CCCAGC | 1 cut(s) | 3189 |
| GsuI | CTGGAG | 2 cut(s) | 2592, 2847 |
| HaeII | RGCGCY | 1 cut(s) | 1576 |
| HaeIII | GGCC | 5 cut(s) | 183, 921, 3986, 4322, 4397 |
| HapII | CCGG | 3 cut(s) | 1470, 1925, 4398 |
| HgaI | GACGC | 4 cut(s) | 282, 2861, 3554, 3598 |
| HhaI | GCGC | 2 cut(s) | 1575, 3421 |
| Hin1I | GRCGYC | 2 cut(s) | 293, 1573 |
| Hin6I | GCGC | 2 cut(s) | 1573, 3419 |
| HinP1I | GCGC | 2 cut(s) | 1573, 3419 |
| HincII | GTYRAC | 4 cut(s) | 1065, 2497, 2762, 4581 |
| HindII | GTYRAC | 4 cut(s) | 1065, 2497, 2762, 4581 |
| HindIII | AAGCTT | 7 cut(s) | 137, 1050, 1517, 3212, 3849, 4532, 4640 |
| HpaI | GTTAAC | 1 cut(s) | 1065 |
| HpaII | CCGG | 3 cut(s) | 1470, 1925, 4398 |
| Hpy99I | CGWCG | 1 cut(s) | 4630 |
| HpyCH4IV | ACGT | 3 cut(s) | 2535, 3006, 4473 |
| HpySE526I | ACGT | 3 cut(s) | 2535, 3006, 4473 |
| Hsp92I | GRCGYC | 2 cut(s) | 293, 1573 |
| HspAI | GCGC | 2 cut(s) | 1573, 3419 |
| KasI | GGCGCC | 1 cut(s) | 1572 |
| KpnI | GGTACC | 1 cut(s) | 4486 |
| Ksp22I | TGATCA | 3 cut(s) | 1000, 2272, 3643 |
| KspAI | GTTAAC | 1 cut(s) | 1065 |
| LguI | GCTCTTC | 2 cut(s) | 2411, 4119 |
| LmnI | GCTCC | 6 cut(s) | 10, 821, 1786, 1963, 4015, 4612 |
| Lsp1109I | GCAGC | 7 cut(s) | 1171, 1479, 1880, 1891, 2341, 3391, 4591 |
| LweI | GCATC | 9 cut(s) | 1547, 2461, 2830, 3714, 4128, 4205, 4294, 4606, 4661 |
| MaeI | CTAG | 8 cut(s) | 1044, 1790, 2663, 2739, 3842, 3996, 4118, 4376 |
| MaeII | ACGT | 3 cut(s) | 2535, 3006, 4473 |
| MfeI | CAATTG | 6 cut(s) | 1004, 1440, 2475, 2964, 3476, 4599 |
| MflI | RGATCY | 3 cut(s) | 700, 2278, 3721 |
| MhlI | GDGCHC | 4 cut(s) | 1470, 1588, 1914, 2423 |
| MlsI | TGGCCA | 2 cut(s) | 921, 4322 |
| MluNI | TGGCCA | 2 cut(s) | 921, 4322 |
| Mly113I | GGCGCC | 1 cut(s) | 1573 |
| MlyI | GAGTC | 5 cut(s) | 28, 49, 2299, 4160, 4532 |
| MmeI | TCCRAC | 3 cut(s) | 1131, 3052, 3545 |
| Mox20I | TGGCCA | 2 cut(s) | 921, 4322 |
| Mph1103I | ATGCAT | 1 cut(s) | 2289 |
| MroXI | GAANNNNTTC | 5 cut(s) | 588, 1020, 1800, 2091, 4344 |
| MscI | TGGCCA | 2 cut(s) | 921, 4322 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1956 |
| Msp20I | TGGCCA | 2 cut(s) | 921, 4322 |
| MspA1I | CMGCKG | 3 cut(s) | 509, 573, 1513 |
| MspI | CCGG | 3 cut(s) | 1470, 1925, 4398 |
| MunI | CAATTG | 6 cut(s) | 1004, 1440, 2475, 2964, 3476, 4599 |
| Mva1269I | GAATGC | 3 cut(s) | 1015, 1045, 3458 |
| MvaI | CCWGG | 9 cut(s) | 100, 251, 1244, 1460, 1756, 2865, 3882, 4148, 4230 |
| MvnI | CGCG | 2 cut(s) | 1434, 3419 |
| NarI | GGCGCC | 1 cut(s) | 1573 |
| NciI | CCSGG | 2 cut(s) | 1470, 4399 |
| NcoI | CCATGG | 2 cut(s) | 2562, 3616 |
| NdeI | CATATG | 2 cut(s) | 643, 2381 |
| NlaIV | GGNNCC | 8 cut(s) | 796, 1474, 1574, 1965, 2076, 2171, 3307, 4484 |
| NmeAIII | GCCGAG | 1 cut(s) | 2506 |
| NmuCI | GTSAC | 5 cut(s) | 20, 2233, 3205, 3413, 4163 |
| NsiI | ATGCAT | 1 cut(s) | 2289 |
| NspI | RCATGY | 6 cut(s) | 245, 722, 1081, 1093, 2978, 3026 |
| PaeI | GCATGC | 1 cut(s) | 1093 |
| PaeR7I | CTCGAG | 2 cut(s) | 2579, 4427 |
| PagI | TCATGA | 1 cut(s) | 3958 |
| PasI | CCCWGGG | 1 cut(s) | 4147 |
| PciI | ACATGT | 2 cut(s) | 1077, 3022 |
| PciSI | GCTCTTC | 2 cut(s) | 2411, 4119 |
| PctI | GAATGC | 3 cut(s) | 1015, 1045, 3458 |
| PdmI | GAANNNNTTC | 5 cut(s) | 588, 1020, 1800, 2091, 4344 |
| PflFI | GACNNNGTC | 1 cut(s) | 3071 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 3292, 4098 |
| PfoI | TCCNGGA | 1 cut(s) | 4228 |
| PkrI | GCNGC | 8 cut(s) | 1186, 1395, 1494, 1870, 1881, 2356, 3381, 4606 |
| PleI | GAGTC | 5 cut(s) | 28, 49, 2299, 4160, 4532 |
| PluTI | GGCGCC | 1 cut(s) | 1576 |
| PpsI | GAGTC | 5 cut(s) | 28, 49, 2299, 4160, 4532 |
| PpuMI | RGGWCCY | 2 cut(s) | 2170, 2818 |
| PscI | ACATGT | 2 cut(s) | 1077, 3022 |
| PshAI | GACNNNNGTC | 3 cut(s) | 1257, 2309, 2732 |
| PshBI | ATTAAT | 1 cut(s) | 1482 |
| PsiI | TTATAA | 2 cut(s) | 4553, 4638 |
| Psp124BI | GAGCTC | 2 cut(s) | 1588, 1914 |
| Psp1406I | AACGTT | 1 cut(s) | 2535 |
| Psp5II | RGGWCCY | 2 cut(s) | 2170, 2818 |
| Psp6I | CCWGG | 9 cut(s) | 98, 249, 1242, 1458, 1754, 2863, 3880, 4146, 4228 |
| PspEI | GGTNACC | 1 cut(s) | 20 |
| PspFI | CCCAGC | 1 cut(s) | 3185 |
| PspGI | CCWGG | 9 cut(s) | 98, 249, 1242, 1458, 1754, 2863, 3880, 4146, 4228 |
| PspN4I | GGNNCC | 8 cut(s) | 796, 1474, 1574, 1965, 2076, 2171, 3307, 4484 |
| PspPI | GGNCC | 9 cut(s) | 182, 795, 1429, 1840, 2139, 2170, 2818, 3985, 4027 |
| PspPPI | RGGWCCY | 2 cut(s) | 2170, 2818 |
| PspXI | VCTCGAGB | 1 cut(s) | 2579 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 3858, 3890 |
| PstI | CTGCAG | 2 cut(s) | 3837, 4615 |
| PstNI | CAGNNNCTG | 2 cut(s) | 4141, 4619 |
| PsuI | RGATCY | 3 cut(s) | 700, 2278, 3721 |
| PsyI | GACNNNGTC | 1 cut(s) | 3071 |
| PvuII | CAGCTG | 1 cut(s) | 1513 |
| RsaI | GTAC | 8 cut(s) | 407, 480, 723, 1437, 2456, 3005, 3452, 4484 |
| RsaNI | GTAC | 8 cut(s) | 406, 479, 722, 1436, 2455, 3004, 3451, 4483 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1956 |
| SacI | GAGCTC | 2 cut(s) | 1588, 1914 |
| SalI | GTCGAC | 1 cut(s) | 2760 |
| SapI | GCTCTTC | 2 cut(s) | 2411, 4119 |
| SatI | GCNGC | 8 cut(s) | 1185, 1394, 1493, 1869, 1880, 2355, 3380, 4605 |
| Sau96I | GGNCC | 9 cut(s) | 182, 795, 1429, 1840, 2139, 2170, 2818, 3985, 4027 |
| SchI | GAGTC | 5 cut(s) | 28, 49, 2299, 4160, 4532 |
| SduI | GDGCHC | 4 cut(s) | 1470, 1588, 1914, 2423 |
| SfaNI | GCATC | 9 cut(s) | 1547, 2461, 2830, 3714, 4128, 4205, 4294, 4606, 4661 |
| SfcI | CTRYAG | 6 cut(s) | 447, 3436, 3669, 3833, 4178, 4611 |
| SfoI | GGCGCC | 1 cut(s) | 1574 |
| Sfr274I | CTCGAG | 2 cut(s) | 2579, 4427 |
| SinI | GGWCC | 7 cut(s) | 795, 1429, 1840, 2139, 2170, 2818, 4027 |
| SlaI | CTCGAG | 2 cut(s) | 2579, 4427 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1956 |
| SmlI | CTYRAG | 5 cut(s) | 484, 2579, 3652, 3846, 4427 |
| SmoI | CTYRAG | 5 cut(s) | 484, 2579, 3652, 3846, 4427 |
| SpeI | ACTAGT | 1 cut(s) | 2662 |
| SphI | GCATGC | 1 cut(s) | 1093 |
| SspDI | GGCGCC | 1 cut(s) | 1572 |
| SspI | AATATT | 2 cut(s) | 2021, 2105 |
| SspMI | CTAG | 8 cut(s) | 1044, 1790, 2663, 2739, 3842, 3996, 4118, 4376 |
| SstI | GAGCTC | 2 cut(s) | 1588, 1914 |
| StyI | CCWWGG | 5 cut(s) | 547, 2562, 2821, 3616, 3739 |
| TaiI | ACGT | 3 cut(s) | 2538, 3009, 4476 |
| TaqII | GACCGA | 1 cut(s) | 812 |
| TatI | WGTACW | 3 cut(s) | 478, 721, 2454 |
| TauI | GCSGC | 1 cut(s) | 1396 |
| TseFI | GTSAC | 5 cut(s) | 20, 2233, 3205, 3413, 4163 |
| TseI | GCWGC | 7 cut(s) | 1184, 1492, 1868, 1879, 2354, 3379, 4604 |
| Tsp45I | GTSAC | 5 cut(s) | 20, 2233, 3205, 3413, 4163 |
| TspGWI | ACGGA | 4 cut(s) | 2102, 2241, 2659, 4325 |
| Tth111I | GACNNNGTC | 1 cut(s) | 3071 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 3292, 4098 |
| VpaK11BI | GGWCC | 7 cut(s) | 795, 1429, 1840, 2139, 2170, 2818, 4027 |
| VspI | ATTAAT | 1 cut(s) | 1482 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1759 |
| XapI | RAATTY | 6 cut(s) | 156, 1373, 1904, 2510, 3061, 4406 |
| XbaI | TCTAGA | 2 cut(s) | 2738, 3995 |
| XceI | RCATGY | 6 cut(s) | 245, 722, 1081, 1093, 2978, 3026 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 2699, 3317, 4226 |
| XhoI | CTCGAG | 2 cut(s) | 2579, 4427 |
| XmiI | GTMKAC | 2 cut(s) | 2761, 3773 |
| XmnI | GAANNNNTTC | 5 cut(s) | 588, 1020, 1800, 2091, 4344 |
| XspI | CTAG | 8 cut(s) | 1044, 1790, 2663, 2739, 3842, 3996, 4118, 4376 |
| Zsp2I | ATGCAT | 1 cut(s) | 2289 |