U5 small nuclear ribonucleoprotein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| BRR2_plug | PF21188 | 117 - 182 | 2.6e-08 | Pre-mRNA-splicing helicase BRR2 plug domain |
| Helicase_PWI | PF18149 | 266 - 377 | 5.3e-32 | N-terminal helicase PWI domain |
| DEAD | PF00270 | 508 - 685 | 9.7e-32 | DEAD/DEAH box helicase |
| ResIII | PF04851 | 519 - 681 | 6.1e-11 | Type III restriction enzyme, res subunit |
| Helicase_C | PF00271 | 798 - 884 | 8.1e-10 | Helicase conserved C-terminal domain |
| WHD_SNRNP200 | PF23445 | 915 - 991 | 1.4e-26 | Winged Helix-turn-helix domain |
| Sec63 | PF02889 | 1007 - 1309 | 1e-95 | Sec63 Brl domain |
| DEAD | PF00270 | 1353 - 1525 | 7.3e-31 | DEAD/DEAH box helicase |
| ResIII | PF04851 | 1353 - 1488 | 4.1e-10 | Type III restriction enzyme, res subunit |
| WHD_SNRNP200 | PF23445 | 1753 - 1833 | 3.6e-36 | Winged Helix-turn-helix domain |
| Sec63 | PF02889 | 1840 - 2157 | 1.2e-71 | Sec63 Brl domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1913 |
| AarI | CACCTGC | 1 cut(s) | 6358 |
| Acc36I | ACCTGC | 5 cut(s) | 3661, 4408, 4950, 6196, 6358 |
| AccB1I | GGYRCC | 1 cut(s) | 6003 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 5146, 6331 |
| AccBSI | CCGCTC | 1 cut(s) | 211 |
| AccI | GTMKAC | 1 cut(s) | 6416 |
| AccII | CGCG | 1 cut(s) | 6260 |
| AclI | AACGTT | 5 cut(s) | 241, 510, 1664, 1747, 3255 |
| AcoI | YGGCCR | 1 cut(s) | 6333 |
| AcuI | CTGAAG | 6 cut(s) | 821, 953, 3110, 4931, 5619, 5753 |
| AflII | CTTAAG | 4 cut(s) | 452, 911, 2360, 4325 |
| AflIII | ACRYGT | 2 cut(s) | 3640, 4783 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 4381 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 2778, 2810, 5045, 5077 |
| AleI | CACNNNNGTG | 1 cut(s) | 883 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 4250, 4282 |
| Alw21I | GWGCWC | 6 cut(s) | 966, 1034, 1585, 1620, 3681, 5448 |
| Alw44I | GTGCAC | 1 cut(s) | 1030 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 6123 |
| Ama87I | CYCGRG | 1 cut(s) | 3290 |
| AoxI | GGCC | 7 cut(s) | 191, 1288, 1485, 1949, 4005, 4593, 6333 |
| ApaI | GGGCCC | 1 cut(s) | 1489 |
| ApaLI | GTGCAC | 1 cut(s) | 1030 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 5623, 5655 |
| AseI | ATTAAT | 1 cut(s) | 2151 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 4018, 4265, 5247 |
| AspLEI | GCGC | 4 cut(s) | 5762, 5776, 6262, 6367 |
| AsuC2I | CCSGG | 3 cut(s) | 3998, 4387, 6018 |
| AsuNHI | GCTAGC | 1 cut(s) | 3038 |
| AvaI | CYCGRG | 1 cut(s) | 3290 |
| AvaII | GGWCC | 8 cut(s) | 685, 1306, 2236, 3820, 4184, 5827, 6237, 6248 |
| BaeGI | GKGCMC | 2 cut(s) | 1034, 1489 |
| BalI | TGGCCA | 1 cut(s) | 6335 |
| BanI | GGYRCC | 1 cut(s) | 6003 |
| BanII | GRGCYC | 5 cut(s) | 1489, 3391, 3681, 4844, 5448 |
| BauI | CACGAG | 4 cut(s) | 264, 1342, 4946, 5745 |
| BbsI | GAAGAC | 7 cut(s) | 344, 1607, 2653, 3759, 4145, 5609, 5759 |
| Bbv12I | GWGCWC | 6 cut(s) | 966, 1034, 1585, 1620, 3681, 5448 |
| BbvCI | CCTCAGC | 3 cut(s) | 924, 1722, 2318 |
| BceAI | ACGGC | 6 cut(s) | 784, 1405, 1558, 1598, 2149, 2526 |
| BciVI | GTATCC | 2 cut(s) | 790, 2684 |
| BclI | TGATCA | 3 cut(s) | 520, 2770, 5431 |
| BcnI | CCSGG | 3 cut(s) | 3998, 4387, 6018 |
| BfmI | CTRYAG | 5 cut(s) | 2113, 2702, 3668, 3969, 5966 |
| BfrI | CTTAAG | 4 cut(s) | 452, 911, 2360, 4325 |
| BfuAI | ACCTGC | 5 cut(s) | 3661, 4408, 4950, 6196, 6358 |
| BfuI | GTATCC | 2 cut(s) | 790, 2684 |
| BglII | AGATCT | 2 cut(s) | 4573, 5625 |
| BlpI | GCTNAGC | 1 cut(s) | 6099 |
| BmcAI | AGTACT | 2 cut(s) | 3788, 4360 |
| Bme18I | GGWCC | 8 cut(s) | 685, 1306, 2236, 3820, 4184, 5827, 6237, 6248 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 4381 |
| BmeT110I | CYCGRG | 1 cut(s) | 3290 |
| BmiI | GGNNCC | 8 cut(s) | 1487, 2177, 2566, 2800, 4594, 5804, 6005, 6249 |
| BmrI | ACTGGG | 4 cut(s) | 1812, 3234, 3712, 4314 |
| BmsI | GCATC | 9 cut(s) | 766, 814, 865, 2887, 3946, 4683, 5323, 5723, 6484 |
| BmtI | GCTAGC | 1 cut(s) | 3042 |
| BmuI | ACTGGG | 4 cut(s) | 1812, 3234, 3712, 4314 |
| BoxI | GACNNNNGTC | 1 cut(s) | 4073 |
| BpiI | GAAGAC | 7 cut(s) | 344, 1607, 2653, 3759, 4145, 5609, 5759 |
| BpmI | CTGGAG | 7 cut(s) | 759, 1331, 1896, 4667, 5374, 6236, 6398 |
| Bpu10I | CCTNAGC | 3 cut(s) | 924, 1722, 2318 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 6099 |
| BpuEI | CTTGAG | 8 cut(s) | 837, 980, 2366, 4244, 4355, 5642, 5767, 5919 |
| BpuMI | CCSGG | 3 cut(s) | 3998, 4387, 6018 |
| BsaAI | YACGTR | 2 cut(s) | 1391, 5213 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1941, 6335 |
| BsaI | GGTCTC | 1 cut(s) | 1047 |
| BsaWI | WCCGGW | 3 cut(s) | 130, 3214, 5251 |
| Bse3DI | GCAATG | 6 cut(s) | 3033, 4203, 5865, 5887, 6111, 6200 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1941, 6335 |
| BseJI | GATNNNNATC | 2 cut(s) | 1941, 6335 |
| BseMI | GCAATG | 6 cut(s) | 3033, 4203, 5865, 5887, 6111, 6200 |
| BseRI | GAGGAG | 8 cut(s) | 44, 719, 1094, 1097, 1178, 2939, 3155, 5508 |
| BseSI | GKGCMC | 2 cut(s) | 1034, 1489 |
| BseYI | CCCAGC | 4 cut(s) | 1595, 2435, 2481, 5180 |
| BsgI | GTGCAG | 4 cut(s) | 1613, 2526, 4085, 4928 |
| Bsh1236I | CGCG | 1 cut(s) | 6260 |
| BshFI | GGCC | 7 cut(s) | 193, 1290, 1487, 1951, 4007, 4595, 6335 |
| BshNI | GGYRCC | 1 cut(s) | 6003 |
| BsiHKAI | GWGCWC | 6 cut(s) | 966, 1034, 1585, 1620, 3681, 5448 |
| BsiHKCI | CYCGRG | 1 cut(s) | 3290 |
| BsiSI | CCGG | 7 cut(s) | 131, 2643, 3215, 3998, 4387, 5252, 6017 |
| BslFI | GGGAC | 8 cut(s) | 1780, 2306, 3042, 4369, 4388, 4625, 4754, 6261 |
| BsmFI | GGGAC | 8 cut(s) | 1780, 2306, 3042, 4369, 4388, 4625, 4754, 6261 |
| BsmI | GAATGC | 2 cut(s) | 1512, 2815 |
| BsnI | GGCC | 7 cut(s) | 193, 1290, 1487, 1951, 4007, 4595, 6335 |
| Bso31I | GGTCTC | 1 cut(s) | 1047 |
| BsoBI | CYCGRG | 1 cut(s) | 3290 |
| Bsp120I | GGGCCC | 1 cut(s) | 1485 |
| Bsp1286I | GDGCHC | 9 cut(s) | 966, 1034, 1489, 1585, 1620, 3391, 3681, 4844, 5448 |
| Bsp1407I | TGTACA | 1 cut(s) | 5364 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 6099 |
| Bsp19I | CCATGG | 2 cut(s) | 3058, 4927 |
| BspANI | GGCC | 7 cut(s) | 193, 1290, 1487, 1951, 4007, 4595, 6335 |
| BspFNI | CGCG | 1 cut(s) | 6260 |
| BspHI | TCATGA | 2 cut(s) | 196, 3781 |
| BspLI | GGNNCC | 8 cut(s) | 1487, 2177, 2566, 2800, 4594, 5804, 6005, 6249 |
| BspMAI | CTGCAG | 2 cut(s) | 3672, 5970 |
| BspMI | ACCTGC | 5 cut(s) | 3661, 4408, 4950, 6196, 6358 |
| BspOI | GCTAGC | 1 cut(s) | 3042 |
| BspQI | GCTCTTC | 4 cut(s) | 897, 2926, 4832, 5253 |
| BspT107I | GGYRCC | 1 cut(s) | 6003 |
| BspTI | CTTAAG | 4 cut(s) | 452, 911, 2360, 4325 |
| BspTNI | GGTCTC | 1 cut(s) | 1047 |
| BsrBI | CCGCTC | 1 cut(s) | 211 |
| BsrDI | GCAATG | 6 cut(s) | 3033, 4203, 5865, 5887, 6111, 6200 |
| BsrGI | TGTACA | 1 cut(s) | 5364 |
| BssNAI | GTATAC | 1 cut(s) | 6417 |
| BssSI | CACGAG | 4 cut(s) | 264, 1342, 4946, 5745 |
| BssT1I | CCWWGG | 5 cut(s) | 1330, 3058, 3483, 4236, 4927 |
| Bst1107I | GTATAC | 1 cut(s) | 6417 |
| Bst2BI | CACGAG | 4 cut(s) | 264, 1342, 4946, 5745 |
| BstAFI | CTTAAG | 4 cut(s) | 452, 911, 2360, 4325 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 2276, 2519 |
| BstAUI | TGTACA | 1 cut(s) | 5364 |
| BstBAI | YACGTR | 2 cut(s) | 1391, 5213 |
| BstC8I | GCNNGC | 9 cut(s) | 36, 1134, 1292, 2541, 2699, 2824, 3040, 4698, 4737 |
| BstDSI | CCRYGG | 4 cut(s) | 1421, 2508, 3058, 4927 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 2586, 4946 |
| BstFNI | CGCG | 1 cut(s) | 6260 |
| BstHHI | GCGC | 4 cut(s) | 5762, 5776, 6262, 6367 |
| BstNSI | RCATGY | 5 cut(s) | 1136, 3644, 4739, 4787, 5944 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 4073 |
| BstSFI | CTRYAG | 5 cut(s) | 2113, 2702, 3668, 3969, 5966 |
| BstSLI | GKGCMC | 2 cut(s) | 1034, 1489 |
| BstUI | CGCG | 1 cut(s) | 6260 |
| BstV2I | GAAGAC | 7 cut(s) | 344, 1607, 2653, 3759, 4145, 5609, 5759 |
| BstX2I | RGATCY | 9 cut(s) | 2077, 3235, 3771, 4321, 4573, 4650, 4804, 5509, 5625 |
| BstXI | CCANNNNNNTGG | 6 cut(s) | 1851, 2834, 2965, 3338, 4661, 4934 |
| BstYI | RGATCY | 9 cut(s) | 2077, 3235, 3771, 4321, 4573, 4650, 4804, 5509, 5625 |
| BstZ17I | GTATAC | 1 cut(s) | 6417 |
| BsuI | GTATCC | 2 cut(s) | 790, 2684 |
| BsuRI | GGCC | 7 cut(s) | 193, 1290, 1487, 1951, 4007, 4595, 6335 |
| BtgI | CCRYGG | 4 cut(s) | 1421, 2508, 3058, 4927 |
| BtgZI | GCGATG | 1 cut(s) | 4715 |
| BtsI | GCAGTG | 3 cut(s) | 1545, 2036, 4719 |
| BveI | ACCTGC | 5 cut(s) | 3661, 4408, 4950, 6196, 6358 |
| Cac8I | GCNNGC | 9 cut(s) | 36, 1134, 1292, 2541, 2699, 2824, 3040, 4698, 4737 |
| CaiI | CAGNNNCTG | 1 cut(s) | 6123 |
| CciI | TCATGA | 2 cut(s) | 196, 3781 |
| CfoI | GCGC | 4 cut(s) | 5762, 5776, 6262, 6367 |
| CseI | GACGC | 9 cut(s) | 86, 1283, 3039, 4385, 5186, 5529, 5690, 6104, 6266 |
| CsiI | ACCWGGT | 1 cut(s) | 2232 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 5924, 5959 |
| DraI | TTTAAA | 1 cut(s) | 3799 |
| DriI | GACNNNNNGTC | 1 cut(s) | 4381 |
| EaeI | YGGCCR | 1 cut(s) | 6333 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 4381 |
| EciI | GGCGGA | 1 cut(s) | 4778 |
| Ecl136II | GAGCTC | 2 cut(s) | 3679, 5446 |
| Eco130I | CCWWGG | 5 cut(s) | 1330, 3058, 3483, 4236, 4927 |
| Eco147I | AGGCCT | 1 cut(s) | 193 |
| Eco24I | GRGCYC | 5 cut(s) | 1489, 3391, 3681, 4844, 5448 |
| Eco31I | GGTCTC | 1 cut(s) | 1047 |
| Eco32I | GATATC | 6 cut(s) | 849, 1183, 1858, 5874, 6196, 6269 |
| Eco47I | GGWCC | 8 cut(s) | 685, 1306, 2236, 3820, 4184, 5827, 6237, 6248 |
| Eco53kI | GAGCTC | 2 cut(s) | 3679, 5446 |
| Eco57I | CTGAAG | 6 cut(s) | 821, 953, 3110, 4931, 5619, 5753 |
| Eco88I | CYCGRG | 1 cut(s) | 3290 |
| EcoICRI | GAGCTC | 2 cut(s) | 3679, 5446 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 2586, 4946 |
| EcoO109I | RGGNCCY | 5 cut(s) | 1949, 2236, 4184, 5827, 6248 |
| EcoRI | GAATTC | 1 cut(s) | 3477 |
| EcoRV | GATATC | 6 cut(s) | 849, 1183, 1858, 5874, 6196, 6269 |
| EcoT14I | CCWWGG | 5 cut(s) | 1330, 3058, 3483, 4236, 4927 |
| EcoT22I | ATGCAT | 1 cut(s) | 5489 |
| EcoT38I | GRGCYC | 5 cut(s) | 1489, 3391, 3681, 4844, 5448 |
| ErhI | CCWWGG | 5 cut(s) | 1330, 3058, 3483, 4236, 4927 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 343, 375, 894, 926, 4003, 4035 |
| FaqI | GGGAC | 8 cut(s) | 1780, 2306, 3042, 4369, 4388, 4625, 4754, 6261 |
| FauI | CCCGC | 2 cut(s) | 4629, 5792 |
| FauNDI | CATATG | 1 cut(s) | 6154 |
| FbaI | TGATCA | 3 cut(s) | 520, 2770, 5431 |
| FblI | GTMKAC | 1 cut(s) | 6416 |
| FriOI | GRGCYC | 5 cut(s) | 1489, 3391, 3681, 4844, 5448 |
| GlaI | GCGC | 4 cut(s) | 5761, 5775, 6261, 6366 |
| GsaI | CCCAGC | 4 cut(s) | 1599, 2439, 2485, 5184 |
| GsuI | CTGGAG | 7 cut(s) | 759, 1331, 1896, 4667, 5374, 6236, 6398 |
| HaeIII | GGCC | 7 cut(s) | 193, 1290, 1487, 1951, 4007, 4595, 6335 |
| HapII | CCGG | 7 cut(s) | 131, 2643, 3215, 3998, 4387, 5252, 6017 |
| HgaI | GACGC | 9 cut(s) | 86, 1283, 3039, 4385, 5186, 5529, 5690, 6104, 6266 |
| HhaI | GCGC | 4 cut(s) | 5762, 5776, 6262, 6367 |
| Hin6I | GCGC | 4 cut(s) | 5760, 5774, 6260, 6365 |
| HinP1I | GCGC | 4 cut(s) | 5760, 5774, 6260, 6365 |
| HincII | GTYRAC | 4 cut(s) | 1228, 2442, 4302, 4438 |
| HindII | GTYRAC | 4 cut(s) | 1228, 2442, 4302, 4438 |
| HindIII | AAGCTT | 3 cut(s) | 1454, 2820, 3191 |
| HpaI | GTTAAC | 1 cut(s) | 4302 |
| HpaII | CCGG | 7 cut(s) | 131, 2643, 3215, 3998, 4387, 5252, 6017 |
| Hpy99I | CGWCG | 4 cut(s) | 102, 105, 1922, 5180 |
| HpyCH4IV | ACGT | 9 cut(s) | 241, 510, 1390, 1664, 1747, 3255, 3343, 5212, 5665 |
| HpySE526I | ACGT | 9 cut(s) | 241, 510, 1390, 1664, 1747, 3255, 3343, 5212, 5665 |
| HspAI | GCGC | 4 cut(s) | 5760, 5774, 6260, 6365 |
| Ksp22I | TGATCA | 3 cut(s) | 520, 2770, 5431 |
| KspAI | GTTAAC | 1 cut(s) | 4302 |
| LguI | GCTCTTC | 4 cut(s) | 897, 2926, 4832, 5253 |
| LmnI | GCTCC | 9 cut(s) | 31, 1588, 2005, 2602, 3553, 4126, 4240, 5142, 5355 |
| LweI | GCATC | 9 cut(s) | 766, 814, 865, 2887, 3946, 4683, 5323, 5723, 6484 |
| MabI | ACCWGGT | 1 cut(s) | 2232 |
| MaeII | ACGT | 9 cut(s) | 241, 510, 1390, 1664, 1747, 3255, 3343, 5212, 5665 |
| MbiI | CCGCTC | 1 cut(s) | 211 |
| MfeI | CAATTG | 2 cut(s) | 392, 1116 |
| MflI | RGATCY | 9 cut(s) | 2077, 3235, 3771, 4321, 4573, 4650, 4804, 5509, 5625 |
| MhlI | GDGCHC | 9 cut(s) | 966, 1034, 1489, 1585, 1620, 3391, 3681, 4844, 5448 |
| MlsI | TGGCCA | 1 cut(s) | 6335 |
| MluNI | TGGCCA | 1 cut(s) | 6335 |
| MmeI | TCCRAC | 7 cut(s) | 1610, 2897, 3483, 4148, 4458, 5487, 6286 |
| Mox20I | TGGCCA | 1 cut(s) | 6335 |
| Mph1103I | ATGCAT | 1 cut(s) | 5489 |
| MroXI | GAANNNNTTC | 3 cut(s) | 4018, 4265, 5247 |
| MscI | TGGCCA | 1 cut(s) | 6335 |
| MslI | CAYNNNNRTG | 5 cut(s) | 883, 2300, 3705, 3881, 4659 |
| Msp20I | TGGCCA | 1 cut(s) | 6335 |
| MspA1I | CMGCKG | 1 cut(s) | 5799 |
| MspCI | CTTAAG | 4 cut(s) | 452, 911, 2360, 4325 |
| MspI | CCGG | 7 cut(s) | 131, 2643, 3215, 3998, 4387, 5252, 6017 |
| MunI | CAATTG | 2 cut(s) | 392, 1116 |
| Mva1269I | GAATGC | 2 cut(s) | 1512, 2815 |
| MvnI | CGCG | 1 cut(s) | 6260 |
| NciI | CCSGG | 3 cut(s) | 3998, 4387, 6018 |
| NcoI | CCATGG | 2 cut(s) | 3058, 4927 |
| NdeI | CATATG | 1 cut(s) | 6154 |
| NheI | GCTAGC | 1 cut(s) | 3038 |
| NlaIV | GGNNCC | 8 cut(s) | 1487, 2177, 2566, 2800, 4594, 5804, 6005, 6249 |
| NmuCI | GTSAC | 7 cut(s) | 2048, 3154, 3685, 4100, 4978, 5929, 6452 |
| NsiI | ATGCAT | 1 cut(s) | 5489 |
| NspI | RCATGY | 5 cut(s) | 1136, 3644, 4739, 4787, 5944 |
| OliI | CACNNNNGTG | 1 cut(s) | 883 |
| PaeI | GCATGC | 2 cut(s) | 1136, 4739 |
| PaeR7I | CTCGAG | 1 cut(s) | 3290 |
| PagI | TCATGA | 2 cut(s) | 196, 3781 |
| PaqCI | CACCTGC | 1 cut(s) | 6358 |
| PceI | AGGCCT | 1 cut(s) | 193 |
| PciI | ACATGT | 2 cut(s) | 3640, 4783 |
| PciSI | GCTCTTC | 4 cut(s) | 897, 2926, 4832, 5253 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 3349 |
| PctI | GAATGC | 2 cut(s) | 1512, 2815 |
| PdmI | GAANNNNTTC | 3 cut(s) | 4018, 4265, 5247 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 5146, 6331 |
| PfoI | TCCNGGA | 3 cut(s) | 687, 3472, 4385 |
| Ppu21I | YACGTR | 2 cut(s) | 1391, 5213 |
| PpuMI | RGGWCCY | 4 cut(s) | 2236, 4184, 5827, 6248 |
| PscI | ACATGT | 2 cut(s) | 3640, 4783 |
| PshAI | GACNNNNGTC | 1 cut(s) | 4073 |
| PshBI | ATTAAT | 1 cut(s) | 2151 |
| PsiI | TTATAA | 1 cut(s) | 1913 |
| Psp124BI | GAGCTC | 2 cut(s) | 3681, 5448 |
| Psp1406I | AACGTT | 5 cut(s) | 241, 510, 1664, 1747, 3255 |
| Psp5II | RGGWCCY | 4 cut(s) | 2236, 4184, 5827, 6248 |
| PspFI | CCCAGC | 4 cut(s) | 1595, 2435, 2481, 5180 |
| PspN4I | GGNNCC | 8 cut(s) | 1487, 2177, 2566, 2800, 4594, 5804, 6005, 6249 |
| PspOMI | GGGCCC | 1 cut(s) | 1485 |
| PspPPI | RGGWCCY | 4 cut(s) | 2236, 4184, 5827, 6248 |
| PspXI | VCTCGAGB | 1 cut(s) | 3290 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 5375, 5407 |
| PstI | CTGCAG | 2 cut(s) | 3672, 5970 |
| PstNI | CAGNNNCTG | 1 cut(s) | 6123 |
| PsuI | RGATCY | 9 cut(s) | 2077, 3235, 3771, 4321, 4573, 4650, 4804, 5509, 5625 |
| RseI | CAYNNNNRTG | 5 cut(s) | 883, 2300, 3705, 3881, 4659 |
| SacI | GAGCTC | 2 cut(s) | 3681, 5448 |
| SapI | GCTCTTC | 4 cut(s) | 897, 2926, 4832, 5253 |
| ScaI | AGTACT | 2 cut(s) | 3788, 4360 |
| SduI | GDGCHC | 9 cut(s) | 966, 1034, 1489, 1585, 1620, 3391, 3681, 4844, 5448 |
| SexAI | ACCWGGT | 1 cut(s) | 2232 |
| SfaNI | GCATC | 9 cut(s) | 766, 814, 865, 2887, 3946, 4683, 5323, 5723, 6484 |
| SfcI | CTRYAG | 5 cut(s) | 2113, 2702, 3668, 3969, 5966 |
| Sfr274I | CTCGAG | 1 cut(s) | 3290 |
| SinI | GGWCC | 8 cut(s) | 685, 1306, 2236, 3820, 4184, 5827, 6237, 6248 |
| SlaI | CTCGAG | 1 cut(s) | 3290 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 883, 2300, 3705, 3881, 4659 |
| SphI | GCATGC | 2 cut(s) | 1136, 4739 |
| SseBI | AGGCCT | 1 cut(s) | 193 |
| SstI | GAGCTC | 2 cut(s) | 3681, 5448 |
| StuI | AGGCCT | 1 cut(s) | 193 |
| StyI | CCWWGG | 5 cut(s) | 1330, 3058, 3483, 4236, 4927 |
| TaiI | ACGT | 9 cut(s) | 244, 513, 1393, 1667, 1750, 3258, 3346, 5215, 5668 |
| TaqII | GACCGA | 2 cut(s) | 2120, 6254 |
| TatI | WGTACW | 5 cut(s) | 301, 3786, 4358, 4729, 5364 |
| TauI | GCSGC | 3 cut(s) | 214, 431, 6500 |
| TseFI | GTSAC | 7 cut(s) | 2048, 3154, 3685, 4100, 4978, 5929, 6452 |
| Tsp45I | GTSAC | 7 cut(s) | 2048, 3154, 3685, 4100, 4978, 5929, 6452 |
| TspGWI | ACGGA | 6 cut(s) | 329, 454, 1245, 2185, 5017, 6373 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 5146, 6331 |
| Vha464I | CTTAAG | 4 cut(s) | 452, 911, 2360, 4325 |
| VneI | GTGCAC | 1 cut(s) | 1030 |
| VpaK11BI | GGWCC | 8 cut(s) | 685, 1306, 2236, 3820, 4184, 5827, 6237, 6248 |
| VspI | ATTAAT | 1 cut(s) | 2151 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 2586, 4946 |
| XbaI | TCTAGA | 1 cut(s) | 4493 |
| XceI | RCATGY | 5 cut(s) | 1136, 3644, 4739, 4787, 5944 |
| XhoI | CTCGAG | 1 cut(s) | 3290 |
| XmiI | GTMKAC | 1 cut(s) | 6416 |
| XmnI | GAANNNNTTC | 3 cut(s) | 4018, 4265, 5247 |
| ZrmI | AGTACT | 2 cut(s) | 3788, 4360 |
| Zsp2I | ATGCAT | 1 cut(s) | 5489 |