Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000802

Physical Location & Seq

Genomic Coordinates Reverse (-)

72486861 .. 72487931

Gene Structure 1071 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0607900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGCCTCTACTTCGCTAGGGGATAAGGGAGGAGTGAGTACAAAGTATTGGAATATGATATGGAGGGCGAGAGTACCCCCAAAGGTGAAATGCTTCACATGGCGTCTACTTAAAGATGCATTACCTACCAGAGTTGCATTAAAGCAACGTAAAGTGGATGTGCATGACGCACGTTGTCTTTTCTGCATGGATGAGGACGAATCATGTTTGCATATCTTTAAGTCTTGTCTTGCTATTCAATGTTTTTGGTCTTATGGGCCACTGCAGTTGACTCCTAGAGAGCACCATGCCCAATCTTTGAAGGAGTGGTTTCTGGATACCATGGATGGGATTGGTGGGGACCAGCGCGACCTGTTTCTAATGGGACTATGGGCCATTTGGGTCGAACGTAACAATATGCTGTGGAAAGGTACATGCTTTCGCCCTATGAACATGATACATTGGACTGTGACATTATTAGAAGATTTCCAATTATACCATCCAAAAGCTGTTAGGAAGAAGAAGAGACCGCTTGTGAAGTGGCAGAACCCGCCTCGAGGCAGACTGAAAATCAACGTGGATGGTGCATTTCGGATGGAAAATGGAAGTGGGGGTATTGGGGTGGTGGTCAGAAACGACATGGGCATGGGTATTGCTGCTTTAGCTCGACCTTTTGTACATGCACACTCGGTCCTTAATATGGAAGCGGAGGCATGTAGAGCTGGTCTTCTCCTTGGGATTCACCAAGGTTGGTCTGACATAGATATTGAAAGCGATTCTGCCATTCTGATTACTGCTCTCAATAGTAAGGAGACAAGTTTCTCTGAGGTAAGTCGGGTTGTAGATGACTGTAAGGGGTATCTAAATGCTTTTCAGTCAGTTAGAATTCGACCCATTTACCGTGAAGCAAATGGTGTAGCTGATAGGCTGGCTCACCTTGCTAGTTGGGGTGCGATCGATGAGGTTTGGTTAGATGAGACACCTGCTATCATTCAGGATGTTCTCTACGAGGATTATTGTAGTTGTTTCTCTGTAGCACGGGGTTCAGGTTTTATGTCCCCCCCCCGTTGCAAAATTCAAATATTAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000354 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005911 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009506 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0022613 GO:0022618 GO:0030054 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0042623 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0046540 GO:0055044 GO:0065003 GO:0070013 GO:0070035 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097525 GO:0097526 GO:0120114 GO:0140098 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD Helicase_C Sec63

Protein Analysis

356

Amino Acids

40.43

Weight (kDa)

8.55

Isoelectric Point (pI)

29.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	13 - 83	4.2e-18	zinc-binding in reverse transcriptase
RVT_3	PF13456	185 - 306	3.4e-23	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20960 AT1G20960 AT2G42270
fragaria_vesca	FvH4_5g21940 FvH4_5g30070 FvH4_6g00860 FvH4_6g00860 FvH4_6g47200
malus_domestica	MD04G1240400.v1.1 MD09G1062900.v1.1 MD09G1063000.v1.1 MD12G1257300.v1.1
prunus_persica	Prupe.6G358100_v2.0.a1 Prupe.6G358100_v2.0.a1
pyrus_communis	pycom04g21210 pycom04g21230 pycom111g05330 pycom12g23600 pycom12g23620
rosa_chinensis	RchiOBHm_Chr2g0166221 RchiOBHm_Chr3g0448041 RchiOBHm_Chr3g0448351 RchiOBHm_Chr5g0014801 RchiOBHm_Chr7g0209461
rosa_laevigata	RLG00000003133 RLG00000021598 RLG00000021599 RLG00000025925 RLG00000025950 RLG00000025953 RLG00000032142
rosa_multiflora	Rmu_co8520521.1_g000001 Rmu_sc0005582.1_g000009 Rmu_sc0005969.1_g000018 Rmu_sc0015167.1_g000007 Rmu_ssc0000323.1_g000031
rosa_roxburghii	Rroxscaffold_1G00061750 Rroxscaffold_2G00085080 Rroxscaffold_3G00249430 Rroxscaffold_6G00426200 Rroxscaffold_6G00426480 Rroxscaffold_6G00426530
rosa_rugosa	Rorug02G0521300 Rorug02G0607900 Rorug02G0611500 Rorug02G0611600 Rorug07G0113200
rosa_samantha	Rh2AG587300 Rh2BG599200 Rh2CG569600 Rh2DG608900 Rh3AG010500 Rh3AG010600 Rh3BG010200 Rh3BG010300 Rh3CG009900 Rh3CG010000 Rh3DG010600 Rh3DG010700 Rh5CG124900 Rh7AG247100 Rh7BG242100 Rh7CG262700 Rh7DG253400
rosa_wichuraiana	Rw0G020040 Rw2G048960 Rw3G000580 Rw3G000830 Rw7G020900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	970
AbsI	CCTCGAGG	1 cut(s)	534
Acc36I	ACCTGC	1 cut(s)	970
AccI	GTMKAC	1 cut(s)	106
AccII	CGCG	1 cut(s)	348
AciI	CCGC	3 cut(s)	509, 530, 686
AcsI	RAATTY	2 cut(s)	864, 1053
AcyI	GRCGYC	1 cut(s)	103
AfaI	GTAC	4 cut(s)	40, 75, 412, 657
AfiI	CCNNNNNNNGG	3 cut(s)	327, 536, 679
AgsI	TTSAA	4 cut(s)	239, 301, 749, 1058
AluBI	AGCT	4 cut(s)	488, 644, 701, 899
AluI	AGCT	4 cut(s)	488, 644, 701, 899
Alw21I	GWGCWC	1 cut(s)	285
Alw26I	GTCTC	3 cut(s)	499, 785, 950
Ama87I	CYCGRG	1 cut(s)	534
AoxI	GGCC	3 cut(s)	3, 257, 372
ApeKI	GCWGC	1 cut(s)	635
ApoI	RAATTY	2 cut(s)	864, 1053
AseI	ATTAAT	1 cut(s)	1064
Asp700I	GAANNNNTTC	1 cut(s)	92
AspLEI	GCGC	1 cut(s)	348
AspS9I	GGNCC	4 cut(s)	257, 340, 372, 670
AsuHPI	GGTGA	3 cut(s)	97, 713, 905
AvaI	CYCGRG	1 cut(s)	534
AvaII	GGWCC	2 cut(s)	340, 670
BbsI	GAAGAC	1 cut(s)	698
Bbv12I	GWGCWC	1 cut(s)	285
BbvI	GCAGC	1 cut(s)	622
BccI	CCATC	4 cut(s)	320, 486, 554, 568
BciVI	GTATCC	1 cut(s)	310
BcoDI	GTCTC	3 cut(s)	499, 785, 950
BfaI	CTAG	3 cut(s)	17, 276, 921
BfmI	CTRYAG	2 cut(s)	263, 1011
BfuAI	ACCTGC	1 cut(s)	970
BfuI	GTATCC	1 cut(s)	310
BisI	GCNGC	1 cut(s)	636
BlsI	GCNGC	1 cut(s)	637
Bme18I	GGWCC	2 cut(s)	340, 670
BmeT110I	CYCGRG	1 cut(s)	534
BmgT120I	GGNCC	4 cut(s)	257, 340, 372, 670
BmiI	GGNNCC	1 cut(s)	341
BmsI	GCATC	1 cut(s)	106
BpiI	GAAGAC	1 cut(s)	698
Bsa29I	ATCGAT	1 cut(s)	936
BsaHI	GRCGYC	1 cut(s)	103
BsaI	GGTCTC	1 cut(s)	499
BsaJI	CCNNGG	3 cut(s)	321, 712, 724
Bsc4I	CCNNNNNNNGG	3 cut(s)	327, 536, 679
BseCI	ATCGAT	1 cut(s)	936
BseDI	CCNNGG	3 cut(s)	321, 712, 724
BseGI	GGATG	7 cut(s)	163, 196, 331, 478, 565, 579, 982
BseLI	CCNNNNNNNGG	3 cut(s)	327, 536, 679
BseMII	CTCAG	1 cut(s)	795
BseRI	GAGGAG	1 cut(s)	45
BseXI	GCAGC	1 cut(s)	622
Bsh1236I	CGCG	1 cut(s)	348
Bsh1285I	CGRYCG	1 cut(s)	936
BshFI	GGCC	3 cut(s)	5, 259, 374
BshVI	ATCGAT	1 cut(s)	936
BsiEI	CGRYCG	1 cut(s)	936
BsiHKAI	GWGCWC	1 cut(s)	285
BsiHKCI	CYCGRG	1 cut(s)	534
BslFI	GGGAC	3 cut(s)	353, 378, 1021
BslI	CCNNNNNNNGG	3 cut(s)	327, 536, 679
BsmAI	GTCTC	3 cut(s)	499, 785, 950
BsmFI	GGGAC	3 cut(s)	353, 378, 1021
BsnI	GGCC	3 cut(s)	5, 259, 374
Bso31I	GGTCTC	1 cut(s)	499
BsoBI	CYCGRG	1 cut(s)	534
Bsp1286I	GDGCHC	1 cut(s)	285
Bsp1407I	TGTACA	1 cut(s)	655
Bsp143I	GATC	1 cut(s)	933
Bsp19I	CCATGG	1 cut(s)	321
BspACI	CCGC	3 cut(s)	509, 530, 686
BspANI	GGCC	3 cut(s)	5, 259, 374
BspCNI	CTCAG	1 cut(s)	796
BspDI	ATCGAT	1 cut(s)	936
BspFNI	CGCG	1 cut(s)	348
BspLI	GGNNCC	1 cut(s)	341
BspMAI	CTGCAG	1 cut(s)	267
BspMI	ACCTGC	1 cut(s)	970
BspTNI	GGTCTC	1 cut(s)	499
BsrGI	TGTACA	1 cut(s)	655
BssECI	CCNNGG	3 cut(s)	321, 712, 724
BssMI	GATC	1 cut(s)	933
BssNI	GRCGYC	1 cut(s)	103
BssT1I	CCWWGG	3 cut(s)	321, 712, 724
Bst4CI	ACNGT	3 cut(s)	448, 830, 881
Bst6I	CTCTTC	1 cut(s)	497
BstACI	GRCGYC	1 cut(s)	103
BstAUI	TGTACA	1 cut(s)	655
BstC8I	GCNNGC	1 cut(s)	909
BstDEI	CTNAG	1 cut(s)	804
BstDSI	CCRYGG	1 cut(s)	321
BstF5I	GGATG	7 cut(s)	163, 196, 331, 478, 565, 579, 982
BstFNI	CGCG	1 cut(s)	348
BstHHI	GCGC	1 cut(s)	348
BstKTI	GATC	1 cut(s)	936
BstMAI	GTCTC	3 cut(s)	499, 785, 950
BstMBI	GATC	1 cut(s)	933
BstMCI	CGRYCG	1 cut(s)	936
BstMWI	GCNNNNNNNGC	4 cut(s)	529, 641, 698, 917
BstNSI	RCATGY	3 cut(s)	417, 662, 696
BstSFI	CTRYAG	2 cut(s)	263, 1011
BstUI	CGCG	1 cut(s)	348
BstV1I	GCAGC	1 cut(s)	622
BstV2I	GAAGAC	1 cut(s)	698
Bsu15I	ATCGAT	1 cut(s)	936
BsuI	GTATCC	1 cut(s)	310
BsuRI	GGCC	3 cut(s)	5, 259, 374
BsuTUI	ATCGAT	1 cut(s)	936
BtgI	CCRYGG	1 cut(s)	321
BtsCI	GGATG	7 cut(s)	163, 196, 331, 478, 565, 579, 982
BtsI	GCAGTG	1 cut(s)	260
BtsIMutI	CAGTG	1 cut(s)	260
BveI	ACCTGC	1 cut(s)	970
Cac8I	GCNNGC	1 cut(s)	909
CfoI	GCGC	1 cut(s)	348
Cfr13I	GGNCC	4 cut(s)	257, 340, 372, 670
ClaI	ATCGAT	1 cut(s)	936
CseI	GACGC	2 cut(s)	92, 176
Csp6I	GTAC	4 cut(s)	39, 74, 411, 656
CspCI	CAANNNNNGTGG	2 cut(s)	249, 284
CviJI	RGCY	9 cut(s)	5, 259, 374, 488, 644, 701, 899, 907, 911
CviKI_1	RGCY	9 cut(s)	5, 259, 374, 488, 644, 701, 899, 907, 911
CviQI	GTAC	4 cut(s)	39, 74, 411, 656
DdeI	CTNAG	1 cut(s)	804
DpnI	GATC	1 cut(s)	935
DpnII	GATC	1 cut(s)	933
Eam1104I	CTCTTC	1 cut(s)	497
EarI	CTCTTC	1 cut(s)	497
Eco130I	CCWWGG	3 cut(s)	321, 712, 724
Eco31I	GGTCTC	1 cut(s)	499
Eco47I	GGWCC	2 cut(s)	340, 670
Eco88I	CYCGRG	1 cut(s)	534
EcoRI	GAATTC	1 cut(s)	864
EcoT14I	CCWWGG	3 cut(s)	321, 712, 724
EcoT22I	ATGCAT	1 cut(s)	121
ErhI	CCWWGG	3 cut(s)	321, 712, 724
FaqI	GGGAC	3 cut(s)	353, 378, 1021
FauI	CCCGC	1 cut(s)	537
FblI	GTMKAC	1 cut(s)	106
Fnu4HI	GCNGC	1 cut(s)	636
FokI	GGATG	7 cut(s)	170, 203, 338, 465, 572, 586, 989
Fsp4HI	GCNGC	1 cut(s)	636
FspBI	CTAG	3 cut(s)	17, 276, 921
GlaI	GCGC	1 cut(s)	347
GluI	GCNGC	1 cut(s)	636
HaeIII	GGCC	3 cut(s)	5, 259, 374
HgaI	GACGC	2 cut(s)	92, 176
HhaI	GCGC	1 cut(s)	348
Hin1I	GRCGYC	1 cut(s)	103
Hin6I	GCGC	1 cut(s)	346
HinP1I	GCGC	1 cut(s)	346
HincII	GTYRAC	1 cut(s)	270
HindII	GTYRAC	1 cut(s)	270
HinfI	GANTC	4 cut(s)	200, 271, 718, 755
HphI	GGTGA	3 cut(s)	97, 713, 905
Hpy166II	GTNNAC	2 cut(s)	107, 270
Hpy188I	TCNGA	5 cut(s)	573, 611, 736, 768, 805
Hpy188III	TCNNGA	2 cut(s)	314, 974
Hpy8I	GTNNAC	2 cut(s)	107, 270
HpyAV	CCTTC	1 cut(s)	295
HpyCH4III	ACNGT	3 cut(s)	448, 830, 881
HpyCH4IV	ACGT	4 cut(s)	148, 172, 388, 555
HpyCH4V	TGCA	9 cut(s)	119, 137, 163, 186, 211, 265, 566, 662, 1050
HpyF10VI	GCNNNNNNNGC	4 cut(s)	529, 641, 698, 917
HpyF3I	CTNAG	1 cut(s)	804
HpySE526I	ACGT	4 cut(s)	148, 172, 388, 555
Hsp92I	GRCGYC	1 cut(s)	103
HspAI	GCGC	1 cut(s)	346
Kzo9I	GATC	1 cut(s)	933
LpnPI	CCDG	9 cut(s)	142, 299, 356, 365, 687, 893, 959, 975, 1011
Lsp1109I	GCAGC	1 cut(s)	622
LweI	GCATC	1 cut(s)	106
MaeI	CTAG	3 cut(s)	17, 276, 921
MaeII	ACGT	4 cut(s)	148, 172, 388, 555
MaeIII	GTNAC	2 cut(s)	389, 448
MalI	GATC	1 cut(s)	935
MboI	GATC	1 cut(s)	933
MboII	GAAGA	5 cut(s)	473, 508, 511, 514, 698
MhlI	GDGCHC	1 cut(s)	285
MluCI	AATT	3 cut(s)	470, 864, 1053
MlyI	GAGTC	1 cut(s)	265
Mph1103I	ATGCAT	1 cut(s)	121
MroXI	GAANNNNTTC	1 cut(s)	92
MseI	TTAA	5 cut(s)	111, 140, 219, 675, 1064
MslI	CAYNNNNRTG	1 cut(s)	623
MvnI	CGCG	1 cut(s)	348
MwoI	GCNNNNNNNGC	4 cut(s)	529, 641, 698, 917
NcoI	CCATGG	1 cut(s)	321
NdeII	GATC	1 cut(s)	933
NlaIV	GGNNCC	1 cut(s)	341
NmuCI	GTSAC	1 cut(s)	448
NsiI	ATGCAT	1 cut(s)	121
NspI	RCATGY	3 cut(s)	417, 662, 696
PaeR7I	CTCGAG	1 cut(s)	534
PaqCI	CACCTGC	1 cut(s)	970
PdmI	GAANNNNTTC	1 cut(s)	92
PfeI	GAWTC	3 cut(s)	200, 718, 755
PkrI	GCNGC	1 cut(s)	637
Ple19I	CGATCG	1 cut(s)	936
PleI	GAGTC	1 cut(s)	265
PpsI	GAGTC	1 cut(s)	265
PshBI	ATTAAT	1 cut(s)	1064
PspN4I	GGNNCC	1 cut(s)	341
PspPI	GGNCC	4 cut(s)	257, 340, 372, 670
PspXI	VCTCGAGB	1 cut(s)	534
PstI	CTGCAG	1 cut(s)	267
PvuI	CGATCG	1 cut(s)	936
RsaI	GTAC	4 cut(s)	40, 75, 412, 657
RsaNI	GTAC	4 cut(s)	39, 74, 411, 656
RseI	CAYNNNNRTG	1 cut(s)	623
SaqAI	TTAA	5 cut(s)	111, 140, 219, 675, 1064
SatI	GCNGC	1 cut(s)	636
Sau3AI	GATC	1 cut(s)	933
Sau96I	GGNCC	4 cut(s)	257, 340, 372, 670
SchI	GAGTC	1 cut(s)	265
SduI	GDGCHC	1 cut(s)	285
SfaNI	GCATC	1 cut(s)	106
SfcI	CTRYAG	2 cut(s)	263, 1011
Sfr274I	CTCGAG	1 cut(s)	534
SinI	GGWCC	2 cut(s)	340, 670
SlaI	CTCGAG	1 cut(s)	534
SmiMI	CAYNNNNRTG	1 cut(s)	623
SmlI	CTYRAG	1 cut(s)	534
SmoI	CTYRAG	1 cut(s)	534
Sse9I	AATT	3 cut(s)	470, 864, 1053
SsiI	CCGC	3 cut(s)	509, 530, 686
SspI	AATATT	1 cut(s)	1062
SspMI	CTAG	3 cut(s)	17, 276, 921
StyI	CCWWGG	3 cut(s)	321, 712, 724
TaaI	ACNGT	3 cut(s)	448, 830, 881
TaiI	ACGT	4 cut(s)	151, 175, 391, 558
TaqI	TCGA	5 cut(s)	384, 535, 646, 868, 936
TaqII	GACCGA	1 cut(s)	658
TasI	AATT	3 cut(s)	470, 864, 1053
TatI	WGTACW	2 cut(s)	38, 655
TfiI	GAWTC	3 cut(s)	200, 718, 755
Tru1I	TTAA	5 cut(s)	111, 140, 219, 675, 1064
Tru9I	TTAA	5 cut(s)	111, 140, 219, 675, 1064
TscAI	CASTG	1 cut(s)	267
TseFI	GTSAC	1 cut(s)	448
TseI	GCWGC	1 cut(s)	635
Tsp45I	GTSAC	1 cut(s)	448
TspDTI	ATGAA	1 cut(s)	443
TspRI	CASTG	1 cut(s)	267
VpaK11BI	GGWCC	2 cut(s)	340, 670
VspI	ATTAAT	1 cut(s)	1064
XapI	RAATTY	2 cut(s)	864, 1053
XceI	RCATGY	3 cut(s)	417, 662, 696
XhoI	CTCGAG	1 cut(s)	534
XmiI	GTMKAC	1 cut(s)	106
XmnI	GAANNNNTTC	1 cut(s)	92
XspI	CTAG	3 cut(s)	17, 276, 921
Zsp2I	ATGCAT	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.