U5 small nuclear ribonucleoprotein 200 kDa
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| BRR2_plug | PF21188 | 149 - 209 | 4.6e-07 | Pre-mRNA-splicing helicase BRR2 plug domain |
| Helicase_PWI | PF18149 | 297 - 407 | 1.3e-31 | N-terminal helicase PWI domain |
| DEAD | PF00270 | 544 - 669 | 5.1e-17 | DEAD/DEAH box helicase |
| Helicase_C | PF00271 | 783 - 866 | 2.8e-09 | Helicase conserved C-terminal domain |
| WHD_SNRNP200 | PF23445 | 897 - 972 | 2.5e-22 | Winged Helix-turn-helix domain |
| Sec63 | PF02889 | 989 - 1274 | 7.8e-92 | Sec63 Brl domain |
| DEAD | PF00270 | 1320 - 1492 | 1.3e-30 | DEAD/DEAH box helicase |
| ResIII | PF04851 | 1330 - 1459 | 6.4e-12 | Type III restriction enzyme, res subunit |
| WHD_SNRNP200 | PF23445 | 1721 - 1801 | 5.1e-34 | Winged Helix-turn-helix domain |
| Sec63 | PF02889 | 1808 - 1960 | 1e-46 | Sec63 Brl domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 3578, 5301 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1715 |
| Acc16I | TGCGCA | 1 cut(s) | 4829 |
| AccB1I | GGYRCC | 3 cut(s) | 512, 3828, 5057 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 5815 |
| AccBSI | CCGCTC | 3 cut(s) | 195, 313, 5479 |
| AccI | GTMKAC | 1 cut(s) | 4341 |
| AccII | CGCG | 8 cut(s) | 63, 169, 518, 1241, 2025, 2984, 4537, 5856 |
| AclI | AACGTT | 1 cut(s) | 4002 |
| AcoI | YGGCCR | 3 cut(s) | 39, 1233, 2635 |
| AcsI | RAATTY | 4 cut(s) | 1070, 1476, 1875, 3606 |
| AcuI | CTGAAG | 7 cut(s) | 911, 1011, 1043, 1695, 4104, 5529, 5657 |
| AcvI | CACGTG | 1 cut(s) | 182 |
| AcyI | GRCGYC | 5 cut(s) | 364, 513, 3289, 3393, 3829 |
| AdeI | CACNNNGTG | 4 cut(s) | 503, 2497, 3083, 5369 |
| AfaI | GTAC | 8 cut(s) | 452, 1837, 2070, 2439, 2603, 3558, 3929, 5270 |
| AfeI | AGCGCT | 1 cut(s) | 1665 |
| AflIII | ACRYGT | 2 cut(s) | 4312, 4687 |
| AgeI | ACCGGT | 1 cut(s) | 1101 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 5804 |
| AhlI | ACTAGT | 1 cut(s) | 4862 |
| AjiI | CACGTC | 1 cut(s) | 4690 |
| AjnI | CCWGG | 7 cut(s) | 4, 296, 1040, 2958, 2970, 4643, 5687 |
| AjuI | GAANNNNNNNTTGG | 8 cut(s) | 2724, 2756, 3390, 3422, 3753, 3785, 4155, 4187 |
| Alw21I | GWGCWC | 2 cut(s) | 1124, 1651 |
| Alw44I | GTGCAC | 1 cut(s) | 1120 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 499, 3448, 4158 |
| Aor51HI | AGCGCT | 1 cut(s) | 1665 |
| AoxI | GGCC | 5 cut(s) | 39, 263, 422, 1233, 2635 |
| ApaLI | GTGCAC | 1 cut(s) | 1120 |
| ApoI | RAATTY | 4 cut(s) | 1070, 1476, 1875, 3606 |
| AseI | ATTAAT | 2 cut(s) | 225, 3198 |
| AsiGI | ACCGGT | 1 cut(s) | 1101 |
| Asp700I | GAANNNNTTC | 8 cut(s) | 18, 471, 996, 2736, 3681, 3750, 5010, 5093 |
| AspS9I | GGNCC | 7 cut(s) | 316, 1190, 1901, 4373, 5259, 5590, 5851 |
| AsuC2I | CCSGG | 3 cut(s) | 442, 3161, 5003 |
| AsuII | TTCGAA | 2 cut(s) | 1623, 3918 |
| AsuNHI | GCTAGC | 1 cut(s) | 3340 |
| AvaII | GGWCC | 7 cut(s) | 316, 1190, 1901, 4373, 5259, 5590, 5851 |
| BaeGI | GKGCMC | 5 cut(s) | 175, 1124, 1555, 2261, 4082 |
| BalI | TGGCCA | 1 cut(s) | 2637 |
| BanI | GGYRCC | 3 cut(s) | 512, 3828, 5057 |
| BanII | GRGCYC | 4 cut(s) | 1141, 3186, 3337, 3627 |
| BbrPI | CACGTG | 1 cut(s) | 182 |
| BbsI | GAAGAC | 7 cut(s) | 1023, 2289, 2342, 3284, 3964, 4040, 5513 |
| Bbv12I | GWGCWC | 2 cut(s) | 1124, 1651 |
| BceAI | ACGGC | 5 cut(s) | 250, 1248, 2229, 4250, 5803 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 2002, 2036, 5375, 5409 |
| BciT130I | CCWGG | 7 cut(s) | 6, 298, 1042, 2960, 2972, 4645, 5689 |
| BciVI | GTATCC | 2 cut(s) | 2945, 3861 |
| BclI | TGATCA | 2 cut(s) | 1513, 2928 |
| BcnI | CCSGG | 3 cut(s) | 442, 3161, 5003 |
| BcuI | ACTAGT | 1 cut(s) | 4862 |
| BfaI | CTAG | 9 cut(s) | 1091, 1926, 2760, 3341, 4398, 4863, 5075, 5534, 5748 |
| BfmI | CTRYAG | 5 cut(s) | 2114, 3861, 5472, 5697, 5870 |
| BfoI | RGCGCY | 4 cut(s) | 153, 516, 1667, 3832 |
| BfuI | GTATCC | 2 cut(s) | 2945, 3861 |
| BglII | AGATCT | 2 cut(s) | 2517, 3058 |
| BlpI | GCTNAGC | 3 cut(s) | 191, 3336, 4704 |
| BmcAI | AGTACT | 1 cut(s) | 3558 |
| Bme18I | GGWCC | 7 cut(s) | 316, 1190, 1901, 4373, 5259, 5590, 5851 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 5804 |
| BmgBI | CACGTC | 1 cut(s) | 4690 |
| BmgT120I | GGNCC | 7 cut(s) | 316, 1190, 1901, 4373, 5259, 5590, 5851 |
| BmrI | ACTGGG | 2 cut(s) | 3180, 4168 |
| BmtI | GCTAGC | 1 cut(s) | 3344 |
| BmuI | ACTGGG | 2 cut(s) | 3180, 4168 |
| BoxI | GACNNNNGTC | 1 cut(s) | 3968 |
| BpiI | GAAGAC | 7 cut(s) | 1023, 2289, 2342, 3284, 3964, 4040, 5513 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 110, 142 |
| BpmI | CTGGAG | 5 cut(s) | 986, 1779, 4251, 5546, 5671 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 191, 3336, 4704 |
| Bpu14I | TTCGAA | 2 cut(s) | 1623, 3918 |
| BpuEI | CTTGAG | 5 cut(s) | 71, 1377, 3340, 4259, 5523 |
| BpuMI | CCSGG | 3 cut(s) | 442, 3161, 5003 |
| BsaAI | YACGTR | 1 cut(s) | 182 |
| BsaBI | GATNNNNATC | 6 cut(s) | 2627, 3057, 3711, 3849, 4411, 4816 |
| BsaHI | GRCGYC | 5 cut(s) | 364, 513, 3289, 3393, 3829 |
| BsaI | GGTCTC | 4 cut(s) | 130, 1449, 1940, 4187 |
| BsaJI | CCNNGG | 5 cut(s) | 5, 516, 675, 2971, 3891 |
| BsaWI | WCCGGW | 2 cut(s) | 1101, 1965 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1163, 1193 |
| Bse118I | RCCGGY | 4 cut(s) | 152, 1101, 1558, 1578 |
| Bse3DI | GCAATG | 5 cut(s) | 837, 2341, 4611, 5150, 5769 |
| Bse8I | GATNNNNATC | 6 cut(s) | 2627, 3057, 3711, 3849, 4411, 4816 |
| BseBI | CCWGG | 7 cut(s) | 6, 298, 1042, 2960, 2972, 4645, 5689 |
| BseDI | CCNNGG | 5 cut(s) | 5, 516, 675, 2971, 3891 |
| BseJI | GATNNNNATC | 6 cut(s) | 2627, 3057, 3711, 3849, 4411, 4816 |
| BseMI | GCAATG | 5 cut(s) | 837, 2341, 4611, 5150, 5769 |
| BseRI | GAGGAG | 7 cut(s) | 755, 758, 761, 764, 946, 1184, 2885 |
| BseSI | GKGCMC | 5 cut(s) | 175, 1124, 1555, 2261, 4082 |
| BseYI | CCCAGC | 4 cut(s) | 662, 1310, 2381, 3448 |
| BsgI | GTGCAG | 6 cut(s) | 887, 1680, 2229, 3882, 3999, 4065 |
| Bsh1236I | CGCG | 8 cut(s) | 63, 169, 518, 1241, 2025, 2984, 4537, 5856 |
| BshFI | GGCC | 5 cut(s) | 41, 265, 424, 1235, 2637 |
| BshNI | GGYRCC | 3 cut(s) | 512, 3828, 5057 |
| BshTI | ACCGGT | 1 cut(s) | 1101 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1124, 1651 |
| BsiWI | CGTACG | 1 cut(s) | 450 |
| BslFI | GGGAC | 5 cut(s) | 193, 329, 2524, 3143, 5864 |
| BsmBI | CGTCTC | 1 cut(s) | 3316 |
| BsmFI | GGGAC | 5 cut(s) | 193, 329, 2524, 3143, 5864 |
| BsmI | GAATGC | 5 cut(s) | 1183, 2197, 2731, 3489, 3663 |
| BsnI | GGCC | 5 cut(s) | 41, 265, 424, 1235, 2637 |
| Bso31I | GGTCTC | 4 cut(s) | 130, 1449, 1940, 4187 |
| Bsp119I | TTCGAA | 2 cut(s) | 1623, 3918 |
| Bsp1407I | TGTACA | 2 cut(s) | 2437, 5268 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 191, 3336, 4704 |
| Bsp68I | TCGCGA | 1 cut(s) | 2984 |
| BspANI | GGCC | 5 cut(s) | 41, 265, 424, 1235, 2637 |
| BspFNI | CGCG | 8 cut(s) | 63, 169, 518, 1241, 2025, 2984, 4537, 5856 |
| BspHI | TCATGA | 4 cut(s) | 1516, 1888, 3673, 3934 |
| BspMAI | CTGCAG | 1 cut(s) | 2118 |
| BspOI | GCTAGC | 1 cut(s) | 3344 |
| BspQI | GCTCTTC | 1 cut(s) | 3174 |
| BspT104I | TTCGAA | 2 cut(s) | 1623, 3918 |
| BspT107I | GGYRCC | 3 cut(s) | 512, 3828, 5057 |
| BspTNI | GGTCTC | 4 cut(s) | 130, 1449, 1940, 4187 |
| BsrBI | CCGCTC | 3 cut(s) | 195, 313, 5479 |
| BsrDI | GCAATG | 5 cut(s) | 837, 2341, 4611, 5150, 5769 |
| BsrFI | RCCGGY | 4 cut(s) | 152, 1101, 1558, 1578 |
| BsrGI | TGTACA | 2 cut(s) | 2437, 5268 |
| BssAI | RCCGGY | 4 cut(s) | 152, 1101, 1558, 1578 |
| BssECI | CCNNGG | 5 cut(s) | 5, 516, 675, 2971, 3891 |
| BssNI | GRCGYC | 5 cut(s) | 364, 513, 3289, 3393, 3829 |
| BssT1I | CCWWGG | 2 cut(s) | 675, 3891 |
| Bst2UI | CCWGG | 7 cut(s) | 6, 298, 1042, 2960, 2972, 4645, 5689 |
| Bst6I | CTCTTC | 5 cut(s) | 1262, 1275, 1764, 3174, 5577 |
| BstACI | GRCGYC | 5 cut(s) | 364, 513, 3289, 3393, 3829 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 2122, 2465, 4052 |
| BstAUI | TGTACA | 2 cut(s) | 2437, 5268 |
| BstBAI | YACGTR | 1 cut(s) | 182 |
| BstBI | TTCGAA | 2 cut(s) | 1623, 3918 |
| BstDSI | CCRYGG | 1 cut(s) | 516 |
| BstEII | GGTNACC | 1 cut(s) | 1739 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 5700 |
| BstFNI | CGCG | 8 cut(s) | 63, 169, 518, 1241, 2025, 2984, 4537, 5856 |
| BstH2I | RGCGCY | 4 cut(s) | 153, 516, 1667, 3832 |
| BstNI | CCWGG | 7 cut(s) | 6, 298, 1042, 2960, 2972, 4645, 5689 |
| BstNSI | RCATGY | 3 cut(s) | 2809, 4316, 4643 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 3968 |
| BstPI | GGTNACC | 1 cut(s) | 1739 |
| BstSFI | CTRYAG | 5 cut(s) | 2114, 3861, 5472, 5697, 5870 |
| BstSLI | GKGCMC | 5 cut(s) | 175, 1124, 1555, 2261, 4082 |
| BstUI | CGCG | 8 cut(s) | 63, 169, 518, 1241, 2025, 2984, 4537, 5856 |
| BstV2I | GAAGAC | 7 cut(s) | 1023, 2289, 2342, 3284, 3964, 4040, 5513 |
| BstX2I | RGATCY | 5 cut(s) | 936, 2517, 2884, 3058, 4477 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 1803, 3419, 4275 |
| BstYI | RGATCY | 5 cut(s) | 936, 2517, 2884, 3058, 4477 |
| BsuI | GTATCC | 2 cut(s) | 2945, 3861 |
| BsuRI | GGCC | 5 cut(s) | 41, 265, 424, 1235, 2637 |
| BtgI | CCRYGG | 1 cut(s) | 516 |
| BtgZI | GCGATG | 1 cut(s) | 5828 |
| BtrI | CACGTC | 1 cut(s) | 4690 |
| BtsI | GCAGTG | 4 cut(s) | 2111, 2241, 2454, 4623 |
| BtuMI | TCGCGA | 1 cut(s) | 2984 |
| CaiI | CAGNNNCTG | 3 cut(s) | 499, 3448, 4158 |
| CciI | TCATGA | 4 cut(s) | 1516, 1888, 3673, 3934 |
| Cfr10I | RCCGGY | 4 cut(s) | 152, 1101, 1558, 1578 |
| Cfr13I | GGNCC | 7 cut(s) | 316, 1190, 1901, 4373, 5259, 5590, 5851 |
| Cfr42I | CCGCGG | 1 cut(s) | 519 |
| CseI | GACGC | 6 cut(s) | 353, 373, 3278, 3382, 4526, 5246 |
| Csp6I | GTAC | 8 cut(s) | 451, 1836, 2069, 2438, 2602, 3557, 3928, 5269 |
| CspAI | ACCGGT | 1 cut(s) | 1101 |
| CviQI | GTAC | 8 cut(s) | 451, 1836, 2069, 2438, 2602, 3557, 3928, 5269 |
| DinI | GGCGCC | 2 cut(s) | 514, 3830 |
| DraIII | CACNNNGTG | 4 cut(s) | 503, 2497, 3083, 5369 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1715 |
| DriI | GACNNNNNGTC | 1 cut(s) | 5804 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1715 |
| EaeI | YGGCCR | 3 cut(s) | 39, 1233, 2635 |
| Eam1104I | CTCTTC | 5 cut(s) | 1262, 1275, 1764, 3174, 5577 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 5804 |
| EarI | CTCTTC | 5 cut(s) | 1262, 1275, 1764, 3174, 5577 |
| EciI | GGCGGA | 1 cut(s) | 658 |
| Eco130I | CCWWGG | 2 cut(s) | 675, 3891 |
| Eco24I | GRGCYC | 4 cut(s) | 1141, 3186, 3337, 3627 |
| Eco31I | GGTCTC | 4 cut(s) | 130, 1449, 1940, 4187 |
| Eco32I | GATATC | 1 cut(s) | 1810 |
| Eco47I | GGWCC | 7 cut(s) | 316, 1190, 1901, 4373, 5259, 5590, 5851 |
| Eco47III | AGCGCT | 1 cut(s) | 1665 |
| Eco57I | CTGAAG | 7 cut(s) | 911, 1011, 1043, 1695, 4104, 5529, 5657 |
| Eco72I | CACGTG | 1 cut(s) | 182 |
| Eco91I | GGTNACC | 1 cut(s) | 1739 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 5700 |
| EcoO109I | RGGNCCY | 2 cut(s) | 316, 1901 |
| EcoO65I | GGTNACC | 1 cut(s) | 1739 |
| EcoRI | GAATTC | 1 cut(s) | 3606 |
| EcoRII | CCWGG | 7 cut(s) | 4, 296, 1040, 2958, 2970, 4643, 5687 |
| EcoRV | GATATC | 1 cut(s) | 1810 |
| EcoT14I | CCWWGG | 2 cut(s) | 675, 3891 |
| EcoT38I | GRGCYC | 4 cut(s) | 1141, 3186, 3337, 3627 |
| EgeI | GGCGCC | 2 cut(s) | 514, 3830 |
| EheI | GGCGCC | 2 cut(s) | 514, 3830 |
| ErhI | CCWWGG | 2 cut(s) | 675, 3891 |
| Esp3I | CGTCTC | 1 cut(s) | 3316 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 5123, 5155, 5605, 5637 |
| FaqI | GGGAC | 5 cut(s) | 193, 329, 2524, 3143, 5864 |
| FauI | CCCGC | 1 cut(s) | 306 |
| FauNDI | CATATG | 2 cut(s) | 2359, 4040 |
| FbaI | TGATCA | 2 cut(s) | 1513, 2928 |
| FblI | GTMKAC | 1 cut(s) | 4341 |
| FriOI | GRGCYC | 4 cut(s) | 1141, 3186, 3337, 3627 |
| FspBI | CTAG | 9 cut(s) | 1091, 1926, 2760, 3341, 4398, 4863, 5075, 5534, 5748 |
| FspI | TGCGCA | 1 cut(s) | 4829 |
| GsaI | CCCAGC | 4 cut(s) | 666, 1314, 2385, 3452 |
| GsuI | CTGGAG | 5 cut(s) | 986, 1779, 4251, 5546, 5671 |
| HaeII | RGCGCY | 4 cut(s) | 153, 516, 1667, 3832 |
| HaeIII | GGCC | 5 cut(s) | 41, 265, 424, 1235, 2637 |
| HgaI | GACGC | 6 cut(s) | 353, 373, 3278, 3382, 4526, 5246 |
| Hin1I | GRCGYC | 5 cut(s) | 364, 513, 3289, 3393, 3829 |
| HincII | GTYRAC | 2 cut(s) | 2781, 3376 |
| HindII | GTYRAC | 2 cut(s) | 2781, 3376 |
| HindIII | AAGCTT | 4 cut(s) | 983, 1085, 3213, 5541 |
| HpaI | GTTAAC | 1 cut(s) | 2781 |
| Hpy166II | GTNNAC | 9 cut(s) | 418, 1122, 2781, 3042, 3376, 3746, 4342, 4655, 5014 |
| Hpy8I | GTNNAC | 9 cut(s) | 418, 1122, 2781, 3042, 3376, 3746, 4342, 4655, 5014 |
| Hpy99I | CGWCG | 5 cut(s) | 271, 369, 430, 1234, 3569 |
| HpyCH4IV | ACGT | 5 cut(s) | 181, 3099, 3564, 4002, 4689 |
| HpySE526I | ACGT | 5 cut(s) | 181, 3099, 3564, 4002, 4689 |
| Hsp92I | GRCGYC | 5 cut(s) | 364, 513, 3289, 3393, 3829 |
| KasI | GGCGCC | 2 cut(s) | 512, 3828 |
| KflI | GGGWCCC | 1 cut(s) | 316 |
| KroI | GCCGGC | 1 cut(s) | 152 |
| KroNI | GCCGGC | 1 cut(s) | 154 |
| Ksp22I | TGATCA | 2 cut(s) | 1513, 2928 |
| KspAI | GTTAAC | 1 cut(s) | 2781 |
| KspI | CCGCGG | 1 cut(s) | 519 |
| LguI | GCTCTTC | 1 cut(s) | 3174 |
| MaeI | CTAG | 9 cut(s) | 1091, 1926, 2760, 3341, 4398, 4863, 5075, 5534, 5748 |
| MaeII | ACGT | 5 cut(s) | 181, 3099, 3564, 4002, 4689 |
| MbiI | CCGCTC | 3 cut(s) | 195, 313, 5479 |
| MfeI | CAATTG | 2 cut(s) | 321, 2720 |
| MflI | RGATCY | 5 cut(s) | 936, 2517, 2884, 3058, 4477 |
| MlsI | TGGCCA | 1 cut(s) | 2637 |
| MluNI | TGGCCA | 1 cut(s) | 2637 |
| Mly113I | GGCGCC | 2 cut(s) | 513, 3829 |
| MlyI | GAGTC | 7 cut(s) | 215, 1611, 1768, 2506, 3958, 4790, 5830 |
| MmeI | TCCRAC | 9 cut(s) | 249, 606, 2847, 3562, 3762, 3780, 4660, 4717, 4886 |
| Mox20I | TGGCCA | 1 cut(s) | 2637 |
| MreI | CGCCGGCG | 1 cut(s) | 152 |
| MroNI | GCCGGC | 1 cut(s) | 152 |
| MroXI | GAANNNNTTC | 8 cut(s) | 18, 471, 996, 2736, 3681, 3750, 5010, 5093 |
| MscI | TGGCCA | 1 cut(s) | 2637 |
| MslI | CAYNNNNRTG | 3 cut(s) | 3615, 4835, 5190 |
| Msp20I | TGGCCA | 1 cut(s) | 2637 |
| MspA1I | CMGCKG | 3 cut(s) | 518, 4954, 5323 |
| MunI | CAATTG | 2 cut(s) | 321, 2720 |
| Mva1269I | GAATGC | 5 cut(s) | 1183, 2197, 2731, 3489, 3663 |
| MvaI | CCWGG | 7 cut(s) | 6, 298, 1042, 2960, 2972, 4645, 5689 |
| MvnI | CGCG | 8 cut(s) | 63, 169, 518, 1241, 2025, 2984, 4537, 5856 |
| NaeI | GCCGGC | 1 cut(s) | 154 |
| NarI | GGCGCC | 2 cut(s) | 513, 3829 |
| NciI | CCSGG | 3 cut(s) | 442, 3161, 5003 |
| NdeI | CATATG | 2 cut(s) | 2359, 4040 |
| NgoMIV | GCCGGC | 1 cut(s) | 152 |
| NheI | GCTAGC | 1 cut(s) | 3340 |
| NmeAIII | GCCGAG | 1 cut(s) | 355 |
| NruI | TCGCGA | 1 cut(s) | 2984 |
| NsbI | TGCGCA | 1 cut(s) | 4829 |
| NspI | RCATGY | 3 cut(s) | 2809, 4316, 4643 |
| NspV | TTCGAA | 2 cut(s) | 1623, 3918 |
| PacI | TTAATTAA | 1 cut(s) | 5604 |
| PagI | TCATGA | 4 cut(s) | 1516, 1888, 3673, 3934 |
| PciI | ACATGT | 1 cut(s) | 4312 |
| PciSI | GCTCTTC | 1 cut(s) | 3174 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 1238, 2590 |
| PctI | GAATGC | 5 cut(s) | 1183, 2197, 2731, 3489, 3663 |
| PdiI | GCCGGC | 1 cut(s) | 154 |
| PdmI | GAANNNNTTC | 8 cut(s) | 18, 471, 996, 2736, 3681, 3750, 5010, 5093 |
| Pfl23II | CGTACG | 1 cut(s) | 450 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 5815 |
| PfoI | TCCNGGA | 1 cut(s) | 296 |
| PinAI | ACCGGT | 1 cut(s) | 1101 |
| PleI | GAGTC | 7 cut(s) | 214, 1610, 1768, 2506, 3958, 4789, 5830 |
| PluTI | GGCGCC | 2 cut(s) | 516, 3832 |
| PmaCI | CACGTG | 1 cut(s) | 182 |
| PmlI | CACGTG | 1 cut(s) | 182 |
| PpsI | GAGTC | 7 cut(s) | 214, 1610, 1768, 2506, 3958, 4789, 5830 |
| Ppu21I | YACGTR | 1 cut(s) | 182 |
| PpuMI | RGGWCCY | 2 cut(s) | 316, 1901 |
| PscI | ACATGT | 1 cut(s) | 4312 |
| PshAI | GACNNNNGTC | 1 cut(s) | 3968 |
| PshBI | ATTAAT | 2 cut(s) | 225, 3198 |
| PsiI | TTATAA | 2 cut(s) | 3578, 5301 |
| Psp1406I | AACGTT | 1 cut(s) | 4002 |
| Psp5II | RGGWCCY | 2 cut(s) | 316, 1901 |
| Psp6I | CCWGG | 7 cut(s) | 4, 296, 1040, 2958, 2970, 4643, 5687 |
| PspCI | CACGTG | 1 cut(s) | 182 |
| PspEI | GGTNACC | 1 cut(s) | 1739 |
| PspFI | CCCAGC | 4 cut(s) | 662, 1310, 2381, 3448 |
| PspGI | CCWGG | 7 cut(s) | 4, 296, 1040, 2958, 2970, 4643, 5687 |
| PspLI | CGTACG | 1 cut(s) | 450 |
| PspPI | GGNCC | 7 cut(s) | 316, 1190, 1901, 4373, 5259, 5590, 5851 |
| PspPPI | RGGWCCY | 2 cut(s) | 316, 1901 |
| PstI | CTGCAG | 1 cut(s) | 2118 |
| PstNI | CAGNNNCTG | 3 cut(s) | 499, 3448, 4158 |
| PsuI | RGATCY | 5 cut(s) | 936, 2517, 2884, 3058, 4477 |
| RruI | TCGCGA | 1 cut(s) | 2984 |
| RsaI | GTAC | 8 cut(s) | 452, 1837, 2070, 2439, 2603, 3558, 3929, 5270 |
| RsaNI | GTAC | 8 cut(s) | 451, 1836, 2069, 2438, 2602, 3557, 3928, 5269 |
| RseI | CAYNNNNRTG | 3 cut(s) | 3615, 4835, 5190 |
| SacII | CCGCGG | 1 cut(s) | 519 |
| SapI | GCTCTTC | 1 cut(s) | 3174 |
| Sau96I | GGNCC | 7 cut(s) | 316, 1190, 1901, 4373, 5259, 5590, 5851 |
| ScaI | AGTACT | 1 cut(s) | 3558 |
| SchI | GAGTC | 7 cut(s) | 215, 1611, 1768, 2506, 3958, 4790, 5830 |
| SfcI | CTRYAG | 5 cut(s) | 2114, 3861, 5472, 5697, 5870 |
| SfoI | GGCGCC | 2 cut(s) | 514, 3830 |
| Sfr303I | CCGCGG | 1 cut(s) | 519 |
| SfuI | TTCGAA | 2 cut(s) | 1623, 3918 |
| SgrAI | CRCCGGYG | 1 cut(s) | 152 |
| SgrBI | CCGCGG | 1 cut(s) | 519 |
| SinI | GGWCC | 7 cut(s) | 316, 1190, 1901, 4373, 5259, 5590, 5851 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 3615, 4835, 5190 |
| SmlI | CTYRAG | 5 cut(s) | 50, 1392, 3319, 4238, 5538 |
| SmoI | CTYRAG | 5 cut(s) | 50, 1392, 3319, 4238, 5538 |
| SpeI | ACTAGT | 1 cut(s) | 4862 |
| SspDI | GGCGCC | 2 cut(s) | 512, 3828 |
| SspI | AATATT | 4 cut(s) | 17, 961, 3680, 4991 |
| SspMI | CTAG | 9 cut(s) | 1091, 1926, 2760, 3341, 4398, 4863, 5075, 5534, 5748 |
| StyI | CCWWGG | 2 cut(s) | 675, 3891 |
| TaiI | ACGT | 5 cut(s) | 184, 3102, 3567, 4005, 4692 |
| TatI | WGTACW | 3 cut(s) | 2437, 3556, 5268 |
| TauI | GCSGC | 8 cut(s) | 44, 198, 518, 3112, 4296, 4535, 4954, 5326 |
| TspGWI | ACGGA | 4 cut(s) | 331, 665, 672, 3703 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 5815 |
| VneI | GTGCAC | 1 cut(s) | 1120 |
| VpaK11BI | GGWCC | 7 cut(s) | 316, 1190, 1901, 4373, 5259, 5590, 5851 |
| VspI | ATTAAT | 2 cut(s) | 225, 3198 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 5700 |
| XapI | RAATTY | 4 cut(s) | 1070, 1476, 1875, 3606 |
| XceI | RCATGY | 3 cut(s) | 2809, 4316, 4643 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 3591, 4358 |
| XmiI | GTMKAC | 1 cut(s) | 4341 |
| XmnI | GAANNNNTTC | 8 cut(s) | 18, 471, 996, 2736, 3681, 3750, 5010, 5093 |
| XspI | CTAG | 9 cut(s) | 1091, 1926, 2760, 3341, 4398, 4863, 5075, 5534, 5748 |
| ZrmI | AGTACT | 1 cut(s) | 3558 |