Helicase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DEAD | PF00270 | 248 - 426 | 3.8e-06 | DEAD/DEAH box helicase |
| Helicase_C | PF00271 | 636 - 735 | 3.5e-10 | Helicase conserved C-terminal domain |
| WHD_HA2 | PF04408 | 797 - 824 | 4e-08 | Helicase associated domain (HA2), winged-helix |
| HA2_C | PF21010 | 826 - 919 | 2e-10 | Helicase associated domain (HA2), ratchet-like |
| OB_NTP_bind | PF07717 | 1010 - 1084 | 1.6e-19 | Oligonucleotide/oligosaccharide-binding (OB)-fold |
| DHX37_C | PF23362 | 1150 - 1228 | 1.1e-12 | DEAH helicase DHX37 C-terminal domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1413 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2660 |
| Acc36I | ACCTGC | 1 cut(s) | 1900 |
| AccBSI | CCGCTC | 1 cut(s) | 3274 |
| AccI | GTMKAC | 2 cut(s) | 555, 3165 |
| AccII | CGCG | 4 cut(s) | 668, 2544, 2546, 2585 |
| AccIII | TCCGGA | 1 cut(s) | 3151 |
| AciI | CCGC | 9 cut(s) | 666, 2045, 2363, 2567, 2583, 3041, 3098, 3272, 3407 |
| AclI | AACGTT | 1 cut(s) | 3491 |
| AclWI | GGATC | 9 cut(s) | 63, 76, 121, 568, 726, 1670, 1848, 1861, 2700 |
| AcsI | RAATTY | 4 cut(s) | 94, 142, 1648, 2344 |
| AcuI | CTGAAG | 4 cut(s) | 209, 549, 1638, 3445 |
| AdeI | CACNNNGTG | 2 cut(s) | 905, 3376 |
| AfaI | GTAC | 3 cut(s) | 257, 648, 989 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 1451, 2167, 2297, 3341, 3406 |
| AflIII | ACRYGT | 3 cut(s) | 451, 1728, 1942 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 588, 2848 |
| AjiI | CACGTC | 1 cut(s) | 2483 |
| AjnI | CCWGG | 4 cut(s) | 1652, 1930, 2065, 2206 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 831, 863 |
| Alw21I | GWGCWC | 1 cut(s) | 3177 |
| Alw26I | GTCTC | 9 cut(s) | 365, 701, 2228, 2466, 2519, 2791, 3138, 3255, 3390 |
| AlwI | GGATC | 9 cut(s) | 63, 76, 121, 568, 726, 1670, 1848, 1861, 2700 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 499, 1755 |
| Ama87I | CYCGRG | 4 cut(s) | 1152, 2718, 2737, 3213 |
| Aor13HI | TCCGGA | 1 cut(s) | 3151 |
| AoxI | GGCC | 1 cut(s) | 3221 |
| ApeKI | GCWGC | 9 cut(s) | 493, 1541, 1823, 1886, 1976, 2573, 2714, 2742, 3404 |
| ApoI | RAATTY | 4 cut(s) | 94, 142, 1648, 2344 |
| AseI | ATTAAT | 1 cut(s) | 762 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1064, 3458 |
| AspA2I | CCTAGG | 1 cut(s) | 47 |
| AspLEI | GCGC | 2 cut(s) | 2546, 3422 |
| AspS9I | GGNCC | 4 cut(s) | 653, 2204, 3280, 3344 |
| AsuC2I | CCSGG | 1 cut(s) | 2530 |
| AsuHPI | GGTGA | 8 cut(s) | 761, 1415, 1703, 2962, 3175, 3229, 3247, 3550 |
| AsuII | TTCGAA | 1 cut(s) | 3703 |
| AvaI | CYCGRG | 4 cut(s) | 1152, 2718, 2737, 3213 |
| AvaII | GGWCC | 4 cut(s) | 653, 2204, 3280, 3344 |
| AvrII | CCTAGG | 1 cut(s) | 47 |
| BaeGI | GKGCMC | 1 cut(s) | 666 |
| BamHI | GGATCC | 2 cut(s) | 68, 1853 |
| BanII | GRGCYC | 2 cut(s) | 624, 3177 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 301, 333 |
| BauI | CACGAG | 1 cut(s) | 657 |
| BbsI | GAAGAC | 8 cut(s) | 612, 1193, 1385, 1509, 1731, 1752, 2840, 2919 |
| Bbv12I | GWGCWC | 1 cut(s) | 3177 |
| BbvI | GCAGC | 9 cut(s) | 505, 1528, 1835, 1898, 1963, 2585, 2701, 2754, 3416 |
| BccI | CCATC | 9 cut(s) | 611, 730, 1028, 1574, 1688, 2291, 2380, 3039, 3535 |
| BceAI | ACGGC | 3 cut(s) | 888, 896, 1789 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2806, 2840 |
| BciT130I | CCWGG | 4 cut(s) | 1654, 1932, 2067, 2208 |
| BciVI | GTATCC | 1 cut(s) | 1362 |
| BcnI | CCSGG | 1 cut(s) | 2530 |
| BcoDI | GTCTC | 9 cut(s) | 365, 701, 2228, 2466, 2519, 2791, 3138, 3255, 3390 |
| BfaI | CTAG | 3 cut(s) | 48, 2172, 2420 |
| BfmI | CTRYAG | 5 cut(s) | 774, 2235, 2757, 3002, 3166 |
| BfuAI | ACCTGC | 1 cut(s) | 1900 |
| BfuI | GTATCC | 1 cut(s) | 1362 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 3229 |
| BlnI | CCTAGG | 1 cut(s) | 47 |
| BlpI | GCTNAGC | 2 cut(s) | 1866, 1905 |
| Bme1390I | CCNGG | 5 cut(s) | 1654, 1932, 2067, 2208, 2530 |
| Bme18I | GGWCC | 4 cut(s) | 653, 2204, 3280, 3344 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 588, 2848 |
| BmeT110I | CYCGRG | 4 cut(s) | 1152, 2718, 2737, 3213 |
| BmgBI | CACGTC | 1 cut(s) | 2483 |
| BmgT120I | GGNCC | 4 cut(s) | 653, 2204, 3280, 3344 |
| BmiI | GGNNCC | 4 cut(s) | 70, 1338, 1855, 3282 |
| BmrFI | CCNGG | 5 cut(s) | 1654, 1932, 2067, 2208, 2530 |
| BmrI | ACTGGG | 3 cut(s) | 807, 1482, 1765 |
| BmsI | GCATC | 8 cut(s) | 69, 1134, 1543, 1801, 2387, 2638, 2737, 3407 |
| BmuI | ACTGGG | 3 cut(s) | 807, 1482, 1765 |
| BpiI | GAAGAC | 8 cut(s) | 612, 1193, 1385, 1509, 1731, 1752, 2840, 2919 |
| BpmI | CTGGAG | 3 cut(s) | 1230, 1914, 1956 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2367 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 1866, 1905 |
| Bpu14I | TTCGAA | 1 cut(s) | 3703 |
| BpuEI | CTTGAG | 5 cut(s) | 569, 801, 2473, 3260, 3283 |
| BpuMI | CCSGG | 1 cut(s) | 2530 |
| BsaAI | YACGTR | 2 cut(s) | 1511, 1943 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1858 |
| BsaI | GGTCTC | 3 cut(s) | 2519, 2791, 3390 |
| BsaJI | CCNNGG | 3 cut(s) | 47, 2557, 2838 |
| BsaWI | WCCGGW | 2 cut(s) | 445, 3151 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1203, 1233 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 1451, 2167, 2297, 3341, 3406 |
| Bse118I | RCCGGY | 1 cut(s) | 1870 |
| Bse1I | ACTGG | 7 cut(s) | 504, 802, 1355, 1477, 1760, 2131, 2206 |
| Bse3DI | GCAATG | 3 cut(s) | 351, 1881, 2768 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1858 |
| BseAI | TCCGGA | 1 cut(s) | 3151 |
| BseBI | CCWGG | 4 cut(s) | 1654, 1932, 2067, 2208 |
| BseDI | CCNNGG | 3 cut(s) | 47, 2557, 2838 |
| BseGI | GGATG | 8 cut(s) | 277, 436, 622, 1149, 2508, 2553, 3050, 3422 |
| BseJI | GATNNNNATC | 1 cut(s) | 1858 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 1451, 2167, 2297, 3341, 3406 |
| BseMI | GCAATG | 3 cut(s) | 351, 1881, 2768 |
| BseNI | ACTGG | 7 cut(s) | 504, 802, 1355, 1477, 1760, 2131, 2206 |
| BseRI | GAGGAG | 3 cut(s) | 1003, 1314, 3320 |
| BseSI | GKGCMC | 1 cut(s) | 666 |
| BseXI | GCAGC | 9 cut(s) | 505, 1528, 1835, 1898, 1963, 2585, 2701, 2754, 3416 |
| BseYI | CCCAGC | 2 cut(s) | 3324, 3476 |
| BsgI | GTGCAG | 2 cut(s) | 1962, 3252 |
| Bsh1236I | CGCG | 4 cut(s) | 668, 2544, 2546, 2585 |
| BshFI | GGCC | 1 cut(s) | 3223 |
| BsiHKAI | GWGCWC | 1 cut(s) | 3177 |
| BsiHKCI | CYCGRG | 4 cut(s) | 1152, 2718, 2737, 3213 |
| BsiSI | CCGG | 5 cut(s) | 446, 1871, 2530, 3152, 3365 |
| BslFI | GGGAC | 3 cut(s) | 1766, 2735, 2950 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 1451, 2167, 2297, 3341, 3406 |
| BsmAI | GTCTC | 9 cut(s) | 365, 701, 2228, 2466, 2519, 2791, 3138, 3255, 3390 |
| BsmBI | CGTCTC | 3 cut(s) | 701, 2228, 3138 |
| BsmFI | GGGAC | 3 cut(s) | 1766, 2735, 2950 |
| BsmI | GAATGC | 4 cut(s) | 379, 1235, 2499, 2773 |
| BsnI | GGCC | 1 cut(s) | 3223 |
| Bso31I | GGTCTC | 3 cut(s) | 2519, 2791, 3390 |
| BsoBI | CYCGRG | 4 cut(s) | 1152, 2718, 2737, 3213 |
| Bsp119I | TTCGAA | 1 cut(s) | 3703 |
| Bsp1286I | GDGCHC | 3 cut(s) | 624, 666, 3177 |
| Bsp13I | TCCGGA | 1 cut(s) | 3151 |
| Bsp1407I | TGTACA | 1 cut(s) | 646 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 1866, 1905 |
| Bsp19I | CCATGG | 1 cut(s) | 2838 |
| BspACI | CCGC | 9 cut(s) | 666, 2045, 2363, 2567, 2583, 3041, 3098, 3272, 3407 |
| BspANI | GGCC | 1 cut(s) | 3223 |
| BspEI | TCCGGA | 1 cut(s) | 3151 |
| BspFNI | CGCG | 4 cut(s) | 668, 2544, 2546, 2585 |
| BspHI | TCATGA | 2 cut(s) | 2280, 2313 |
| BspLI | GGNNCC | 4 cut(s) | 70, 1338, 1855, 3282 |
| BspMAI | CTGCAG | 2 cut(s) | 778, 2239 |
| BspMI | ACCTGC | 1 cut(s) | 1900 |
| BspPI | GGATC | 9 cut(s) | 63, 76, 121, 568, 726, 1670, 1848, 1861, 2700 |
| BspQI | GCTCTTC | 1 cut(s) | 2182 |
| BspT104I | TTCGAA | 1 cut(s) | 3703 |
| BspTNI | GGTCTC | 3 cut(s) | 2519, 2791, 3390 |
| BsrBI | CCGCTC | 1 cut(s) | 3274 |
| BsrDI | GCAATG | 3 cut(s) | 351, 1881, 2768 |
| BsrFI | RCCGGY | 1 cut(s) | 1870 |
| BsrGI | TGTACA | 1 cut(s) | 646 |
| BsrI | ACTGG | 7 cut(s) | 504, 802, 1355, 1477, 1760, 2131, 2206 |
| BssAI | RCCGGY | 1 cut(s) | 1870 |
| BssECI | CCNNGG | 3 cut(s) | 47, 2557, 2838 |
| BssSI | CACGAG | 1 cut(s) | 657 |
| BssT1I | CCWWGG | 3 cut(s) | 47, 2557, 2838 |
| Bst2BI | CACGAG | 1 cut(s) | 657 |
| Bst2UI | CCWGG | 4 cut(s) | 1654, 1932, 2067, 2208 |
| Bst6I | CTCTTC | 4 cut(s) | 699, 1713, 2182, 3003 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 3682 |
| BstAUI | TGTACA | 1 cut(s) | 646 |
| BstBAI | YACGTR | 2 cut(s) | 1511, 1943 |
| BstBI | TTCGAA | 1 cut(s) | 3703 |
| BstC8I | GCNNGC | 7 cut(s) | 166, 545, 666, 1664, 1872, 3173, 3243 |
| BstDSI | CCRYGG | 1 cut(s) | 2838 |
| BstF5I | GGATG | 8 cut(s) | 277, 436, 622, 1149, 2508, 2553, 3050, 3422 |
| BstFNI | CGCG | 4 cut(s) | 668, 2544, 2546, 2585 |
| BstHHI | GCGC | 2 cut(s) | 2546, 3422 |
| BstMAI | GTCTC | 9 cut(s) | 365, 701, 2228, 2466, 2519, 2791, 3138, 3255, 3390 |
| BstNI | CCWGG | 4 cut(s) | 1654, 1932, 2067, 2208 |
| BstNSI | RCATGY | 4 cut(s) | 455, 1732, 3096, 3202 |
| BstSCI | CCNGG | 5 cut(s) | 1652, 1930, 2065, 2206, 2528 |
| BstSFI | CTRYAG | 5 cut(s) | 774, 2235, 2757, 3002, 3166 |
| BstSLI | GKGCMC | 1 cut(s) | 666 |
| BstSNI | TACGTA | 1 cut(s) | 1511 |
| BstUI | CGCG | 4 cut(s) | 668, 2544, 2546, 2585 |
| BstV1I | GCAGC | 9 cut(s) | 505, 1528, 1835, 1898, 1963, 2585, 2701, 2754, 3416 |
| BstV2I | GAAGAC | 8 cut(s) | 612, 1193, 1385, 1509, 1731, 1752, 2840, 2919 |
| BstX2I | RGATCY | 4 cut(s) | 68, 718, 1675, 1853 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 934 |
| BstYI | RGATCY | 4 cut(s) | 68, 718, 1675, 1853 |
| BsuI | GTATCC | 1 cut(s) | 1362 |
| BsuRI | GGCC | 1 cut(s) | 3223 |
| BtgI | CCRYGG | 1 cut(s) | 2838 |
| BtgZI | GCGATG | 2 cut(s) | 1590, 2760 |
| BtrI | CACGTC | 1 cut(s) | 2483 |
| BtsCI | GGATG | 8 cut(s) | 277, 436, 622, 1149, 2508, 2553, 3050, 3422 |
| BtsI | GCAGTG | 1 cut(s) | 921 |
| BtsIMutI | CAGTG | 5 cut(s) | 561, 578, 921, 2212, 3379 |
| BveI | ACCTGC | 1 cut(s) | 1900 |
| Cac8I | GCNNGC | 7 cut(s) | 166, 545, 666, 1664, 1872, 3173, 3243 |
| CaiI | CAGNNNCTG | 2 cut(s) | 499, 1755 |
| CciI | TCATGA | 2 cut(s) | 2280, 2313 |
| CfoI | GCGC | 2 cut(s) | 2546, 3422 |
| Cfr10I | RCCGGY | 1 cut(s) | 1870 |
| Cfr13I | GGNCC | 4 cut(s) | 653, 2204, 3280, 3344 |
| CsiI | ACCWGGT | 1 cut(s) | 2206 |
| Csp6I | GTAC | 3 cut(s) | 256, 647, 988 |
| CspCI | CAANNNNNGTGG | 1 cut(s) | 29 |
| CviQI | GTAC | 3 cut(s) | 256, 647, 988 |
| DraIII | CACNNNGTG | 2 cut(s) | 905, 3376 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2660 |
| DriI | GACNNNNNGTC | 2 cut(s) | 588, 2848 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2660 |
| Eam1104I | CTCTTC | 4 cut(s) | 699, 1713, 2182, 3003 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 588, 2848 |
| EarI | CTCTTC | 4 cut(s) | 699, 1713, 2182, 3003 |
| EciI | GGCGGA | 1 cut(s) | 2352 |
| Ecl136II | GAGCTC | 1 cut(s) | 3175 |
| Eco105I | TACGTA | 1 cut(s) | 1511 |
| Eco130I | CCWWGG | 3 cut(s) | 47, 2557, 2838 |
| Eco24I | GRGCYC | 2 cut(s) | 624, 3177 |
| Eco31I | GGTCTC | 3 cut(s) | 2519, 2791, 3390 |
| Eco47I | GGWCC | 4 cut(s) | 653, 2204, 3280, 3344 |
| Eco53kI | GAGCTC | 1 cut(s) | 3175 |
| Eco57I | CTGAAG | 4 cut(s) | 209, 549, 1638, 3445 |
| Eco88I | CYCGRG | 4 cut(s) | 1152, 2718, 2737, 3213 |
| EcoICRI | GAGCTC | 1 cut(s) | 3175 |
| EcoO109I | RGGNCCY | 2 cut(s) | 653, 3280 |
| EcoRI | GAATTC | 2 cut(s) | 94, 142 |
| EcoRII | CCWGG | 4 cut(s) | 1652, 1930, 2065, 2206 |
| EcoT14I | CCWWGG | 3 cut(s) | 47, 2557, 2838 |
| EcoT38I | GRGCYC | 2 cut(s) | 624, 3177 |
| ErhI | CCWWGG | 3 cut(s) | 47, 2557, 2838 |
| Esp3I | CGTCTC | 3 cut(s) | 701, 2228, 3138 |
| FaqI | GGGAC | 3 cut(s) | 1766, 2735, 2950 |
| FauI | CCCGC | 2 cut(s) | 673, 3034 |
| FauNDI | CATATG | 1 cut(s) | 3035 |
| FblI | GTMKAC | 2 cut(s) | 555, 3165 |
| FokI | GGATG | 8 cut(s) | 284, 443, 629, 1156, 2495, 2540, 3057, 3429 |
| FriOI | GRGCYC | 2 cut(s) | 624, 3177 |
| FspBI | CTAG | 3 cut(s) | 48, 2172, 2420 |
| GlaI | GCGC | 2 cut(s) | 2545, 3421 |
| GsaI | CCCAGC | 2 cut(s) | 3328, 3480 |
| GsuI | CTGGAG | 3 cut(s) | 1230, 1914, 1956 |
| HaeIII | GGCC | 1 cut(s) | 3223 |
| HapII | CCGG | 5 cut(s) | 446, 1871, 2530, 3152, 3365 |
| HhaI | GCGC | 2 cut(s) | 2546, 3422 |
| Hin6I | GCGC | 2 cut(s) | 2544, 3420 |
| HinP1I | GCGC | 2 cut(s) | 2544, 3420 |
| HincII | GTYRAC | 4 cut(s) | 1489, 1600, 2177, 2439 |
| HindII | GTYRAC | 4 cut(s) | 1489, 1600, 2177, 2439 |
| HindIII | AAGCTT | 8 cut(s) | 545, 1117, 1407, 1805, 2163, 2406, 3457, 3507 |
| HpaI | GTTAAC | 1 cut(s) | 2439 |
| HpaII | CCGG | 5 cut(s) | 446, 1871, 2530, 3152, 3365 |
| HphI | GGTGA | 8 cut(s) | 761, 1415, 1703, 2962, 3175, 3229, 3247, 3550 |
| Hpy166II | GTNNAC | 8 cut(s) | 154, 556, 1489, 1600, 2177, 2439, 2480, 3166 |
| Hpy8I | GTNNAC | 8 cut(s) | 154, 556, 1489, 1600, 2177, 2439, 2480, 3166 |
| Hpy99I | CGWCG | 1 cut(s) | 283 |
| HpyAV | CCTTC | 6 cut(s) | 330, 709, 1600, 1689, 1793, 2615 |
| HpyCH4IV | ACGT | 6 cut(s) | 1510, 1942, 2482, 2949, 3491, 3699 |
| HpySE526I | ACGT | 6 cut(s) | 1510, 1942, 2482, 2949, 3491, 3699 |
| HspAI | GCGC | 2 cut(s) | 2544, 3420 |
| Kpn2I | TCCGGA | 1 cut(s) | 3151 |
| KroI | GCCGGC | 1 cut(s) | 1870 |
| KroNI | GCCGGC | 1 cut(s) | 1872 |
| KspAI | GTTAAC | 1 cut(s) | 2439 |
| LguI | GCTCTTC | 1 cut(s) | 2182 |
| LmnI | GCTCC | 4 cut(s) | 739, 3154, 3180, 3206 |
| Lsp1109I | GCAGC | 9 cut(s) | 505, 1528, 1835, 1898, 1963, 2585, 2701, 2754, 3416 |
| LweI | GCATC | 8 cut(s) | 69, 1134, 1543, 1801, 2387, 2638, 2737, 3407 |
| MabI | ACCWGGT | 1 cut(s) | 2206 |
| MaeI | CTAG | 3 cut(s) | 48, 2172, 2420 |
| MaeII | ACGT | 6 cut(s) | 1510, 1942, 2482, 2949, 3491, 3699 |
| MbiI | CCGCTC | 1 cut(s) | 3274 |
| MflI | RGATCY | 4 cut(s) | 68, 718, 1675, 1853 |
| MhlI | GDGCHC | 3 cut(s) | 624, 666, 3177 |
| MmeI | TCCRAC | 6 cut(s) | 494, 1192, 1662, 2381, 2757, 3477 |
| MroI | TCCGGA | 1 cut(s) | 3151 |
| MroNI | GCCGGC | 1 cut(s) | 1870 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1064, 3458 |
| MseI | TTAA | 7 cut(s) | 762, 1248, 1830, 2100, 2438, 2709, 3443 |
| MslI | CAYNNNNRTG | 2 cut(s) | 384, 2513 |
| MspA1I | CMGCKG | 2 cut(s) | 1976, 3407 |
| MspI | CCGG | 5 cut(s) | 446, 1871, 2530, 3152, 3365 |
| MspR9I | CCNGG | 5 cut(s) | 1654, 1932, 2067, 2208, 2530 |
| Mva1269I | GAATGC | 4 cut(s) | 379, 1235, 2499, 2773 |
| MvaI | CCWGG | 4 cut(s) | 1654, 1932, 2067, 2208 |
| MvnI | CGCG | 4 cut(s) | 668, 2544, 2546, 2585 |
| NaeI | GCCGGC | 1 cut(s) | 1872 |
| NciI | CCSGG | 1 cut(s) | 2530 |
| NcoI | CCATGG | 1 cut(s) | 2838 |
| NdeI | CATATG | 1 cut(s) | 3035 |
| NgoMIV | GCCGGC | 1 cut(s) | 1870 |
| NlaIV | GGNNCC | 4 cut(s) | 70, 1338, 1855, 3282 |
| NmeAIII | GCCGAG | 1 cut(s) | 265 |
| NmuCI | GTSAC | 4 cut(s) | 767, 1468, 2210, 2483 |
| NspI | RCATGY | 4 cut(s) | 455, 1732, 3096, 3202 |
| NspV | TTCGAA | 1 cut(s) | 3703 |
| PaeR7I | CTCGAG | 1 cut(s) | 1152 |
| PagI | TCATGA | 2 cut(s) | 2280, 2313 |
| PciI | ACATGT | 2 cut(s) | 451, 1728 |
| PciSI | GCTCTTC | 1 cut(s) | 2182 |
| PctI | GAATGC | 4 cut(s) | 379, 1235, 2499, 2773 |
| PdiI | GCCGGC | 1 cut(s) | 1872 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1064, 3458 |
| PfeI | GAWTC | 9 cut(s) | 389, 419, 485, 1894, 2117, 2261, 2548, 2967, 3601 |
| PflFI | GACNNNGTC | 1 cut(s) | 2208 |
| PfoI | TCCNGGA | 1 cut(s) | 1930 |
| Ppu21I | YACGTR | 2 cut(s) | 1511, 1943 |
| PpuMI | RGGWCCY | 2 cut(s) | 653, 3280 |
| PscI | ACATGT | 2 cut(s) | 451, 1728 |
| PshBI | ATTAAT | 1 cut(s) | 762 |
| PsiI | TTATAA | 1 cut(s) | 1413 |
| Psp124BI | GAGCTC | 1 cut(s) | 3177 |
| Psp1406I | AACGTT | 1 cut(s) | 3491 |
| Psp5II | RGGWCCY | 2 cut(s) | 653, 3280 |
| Psp6I | CCWGG | 4 cut(s) | 1652, 1930, 2065, 2206 |
| PspFI | CCCAGC | 2 cut(s) | 3324, 3476 |
| PspGI | CCWGG | 4 cut(s) | 1652, 1930, 2065, 2206 |
| PspN4I | GGNNCC | 4 cut(s) | 70, 1338, 1855, 3282 |
| PspPI | GGNCC | 4 cut(s) | 653, 2204, 3280, 3344 |
| PspPPI | RGGWCCY | 2 cut(s) | 653, 3280 |
| PspXI | VCTCGAGB | 1 cut(s) | 1152 |
| PstI | CTGCAG | 2 cut(s) | 778, 2239 |
| PstNI | CAGNNNCTG | 2 cut(s) | 499, 1755 |
| PsuI | RGATCY | 4 cut(s) | 68, 718, 1675, 1853 |
| PsyI | GACNNNGTC | 1 cut(s) | 2208 |
| PvuII | CAGCTG | 1 cut(s) | 1976 |
| RsaI | GTAC | 3 cut(s) | 257, 648, 989 |
| RsaNI | GTAC | 3 cut(s) | 256, 647, 988 |
| RseI | CAYNNNNRTG | 2 cut(s) | 384, 2513 |
| SacI | GAGCTC | 1 cut(s) | 3177 |
| SapI | GCTCTTC | 1 cut(s) | 2182 |
| SaqAI | TTAA | 7 cut(s) | 762, 1248, 1830, 2100, 2438, 2709, 3443 |
| Sau96I | GGNCC | 4 cut(s) | 653, 2204, 3280, 3344 |
| ScrFI | CCNGG | 5 cut(s) | 1654, 1932, 2067, 2208, 2530 |
| SduI | GDGCHC | 3 cut(s) | 624, 666, 3177 |
| SexAI | ACCWGGT | 1 cut(s) | 2206 |
| SfaNI | GCATC | 8 cut(s) | 69, 1134, 1543, 1801, 2387, 2638, 2737, 3407 |
| SfcI | CTRYAG | 5 cut(s) | 774, 2235, 2757, 3002, 3166 |
| Sfr274I | CTCGAG | 1 cut(s) | 1152 |
| SfuI | TTCGAA | 1 cut(s) | 3703 |
| SinI | GGWCC | 4 cut(s) | 653, 2204, 3280, 3344 |
| SlaI | CTCGAG | 1 cut(s) | 1152 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 384, 2513 |
| SmlI | CTYRAG | 6 cut(s) | 548, 816, 1152, 2488, 3275, 3298 |
| SmoI | CTYRAG | 6 cut(s) | 548, 816, 1152, 2488, 3275, 3298 |
| SnaBI | TACGTA | 1 cut(s) | 1511 |
| SsiI | CCGC | 9 cut(s) | 666, 2045, 2363, 2567, 2583, 3041, 3098, 3272, 3407 |
| SspMI | CTAG | 3 cut(s) | 48, 2172, 2420 |
| SstI | GAGCTC | 1 cut(s) | 3177 |
| StyD4I | CCNGG | 5 cut(s) | 1652, 1930, 2065, 2206, 2528 |
| StyI | CCWWGG | 3 cut(s) | 47, 2557, 2838 |
| TaiI | ACGT | 6 cut(s) | 1513, 1945, 2485, 2952, 3494, 3702 |
| TaqI | TCGA | 9 cut(s) | 116, 396, 871, 1098, 1153, 1345, 1987, 2978, 3703 |
| TaqII | GACCGA | 3 cut(s) | 1046, 3332, 3414 |
| TatI | WGTACW | 2 cut(s) | 255, 646 |
| TauI | GCSGC | 2 cut(s) | 2585, 3410 |
| TfiI | GAWTC | 9 cut(s) | 389, 419, 485, 1894, 2117, 2261, 2548, 2967, 3601 |
| Tru1I | TTAA | 7 cut(s) | 762, 1248, 1830, 2100, 2438, 2709, 3443 |
| Tru9I | TTAA | 7 cut(s) | 762, 1248, 1830, 2100, 2438, 2709, 3443 |
| TscAI | CASTG | 5 cut(s) | 568, 585, 928, 2219, 3379 |
| TseFI | GTSAC | 4 cut(s) | 767, 1468, 2210, 2483 |
| TseI | GCWGC | 9 cut(s) | 493, 1541, 1823, 1886, 1976, 2573, 2714, 2742, 3404 |
| Tsp45I | GTSAC | 4 cut(s) | 767, 1468, 2210, 2483 |
| TspGWI | ACGGA | 6 cut(s) | 148, 196, 1846, 2445, 2698, 3219 |
| TspRI | CASTG | 5 cut(s) | 568, 585, 928, 2219, 3379 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2208 |
| VpaK11BI | GGWCC | 4 cut(s) | 653, 2204, 3280, 3344 |
| VspI | ATTAAT | 1 cut(s) | 762 |
| XapI | RAATTY | 4 cut(s) | 94, 142, 1648, 2344 |
| XbaI | TCTAGA | 1 cut(s) | 2419 |
| XceI | RCATGY | 4 cut(s) | 455, 1732, 3096, 3202 |
| XhoI | CTCGAG | 1 cut(s) | 1152 |
| XmaJI | CCTAGG | 1 cut(s) | 47 |
| XmiI | GTMKAC | 2 cut(s) | 555, 3165 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1064, 3458 |
| XspI | CTAG | 3 cut(s) | 48, 2172, 2420 |