Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000599

Physical Location & Seq

Genomic Coordinates Reverse (-)

82829779 .. 82830526

Gene Structure 748 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53610

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGGCAGAACGTCCTCACACTGTTTTAAGGCCAGAGACAGCAGGTCGAGAACGGGTTCATAATCTCTTGGCGAAGCTGGGGAAGAAAAAGATAGTCAGCCGTGCTATGTTGATAGAGGTGTGGAAGGAAAATCCCACTGAATTGTATCCGGAAATCCGGAGCTGGTTTAAGGAGAGTTTCCACCAGAAGTTTAGGGAAATTTGGGTCAAGATGCTTTATGAAGCCCTTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

77

Amino Acids

9.3

Weight (kDa)

9.82

Isoelectric Point (pI)

46.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHX37_C	PF23362	2 - 71	3.3e-16	DEAH helicase DHX37 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33390 AT1G33390
fragaria_vesca	FvH4_3g40090 FvH4_3g40090 FvH4_3g40090 FvH4_6g48600
malus_domestica	MD04G1241500.v1.1 MD05G1017800.v1.1
prunus_persica	Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1
pyrus_communis	pycom04g21310 pycom05g01000 pycom05g01050 pycom11g20470
rosa_chinensis	RchiOBHm_Chr2g0168421 RchiOBHm_Chr2g0168431 RchiOBHm_Chr2g0168441 RchiOBHm_Chr2g0168451 RchiOBHm_Chr2g0168461 RchiOBHm_Chr4g0407811 RchiOBHm_Chr7g0220161 RchiOBHm_Chr7g0220171 RchiOBHm_Chr7g0220481
rosa_laevigata	RLG00000002253 RLG00000008696 RLG00000021781
rosa_multiflora	Rmu_co8232135.1_g000001 Rmu_sc0000966.1_g000007 Rmu_sc0003573.1_g000032 Rmu_sc0006361.1_g000012 Rmu_sc0006361.1_g000013 Rmu_sc0012607.1_g000001 Rmu_sc0016657.1_g000009
rosa_roxburghii	Rroxscaffold_2G00083000 Rroxscaffold_2G00083010 Rroxscaffold_3G00239750 Rroxscaffold_5G00352370
rosa_rugosa	Rorug02G0533800 Rorug02G0533800 Rorug04G0081400 Rorug07G0189900 Rorug07G0190000
rosa_samantha	Rh2AG603500 Rh2AG603700 Rh2BG616600 Rh2BG616700 Rh2BG616800 Rh2CG584500 Rh2CG584600 Rh2CG584700 Rh2DG627100 Rh2DG627200 Rh4AG146500 Rh4BG144000 Rh4CG153000 Rh4DG140500 Rh7AG332900 Rh7BG324300 Rh7BG324400 Rh7BG324500 Rh7CG350400 Rh7DG329000
rosa_wichuraiana	Rw0G022710 Rw2G050050 Rw4G011990 Rw7G028060 Rw7G028070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	32
AccIII	TCCGGA	2 cut(s)	148, 156
AcsI	RAATTY	1 cut(s)	198
AhdI	GACNNNNNGTC	1 cut(s)	42
AluBI	AGCT	2 cut(s)	76, 162
AluI	AGCT	2 cut(s)	76, 162
Alw26I	GTCTC	1 cut(s)	29
Aor13HI	TCCGGA	2 cut(s)	148, 156
AoxI	GGCC	1 cut(s)	29
ApoI	RAATTY	1 cut(s)	198
Asp700I	GAANNNNTTC	1 cut(s)	54
BceAI	ACGGC	1 cut(s)	84
BciVI	GTATCC	1 cut(s)	156
BcoDI	GTCTC	1 cut(s)	29
BfuAI	ACCTGC	1 cut(s)	32
BfuI	GTATCC	1 cut(s)	156
BmeRI	GACNNNNNGTC	1 cut(s)	42
BmsI	GCATC	1 cut(s)	201
BsaWI	WCCGGW	2 cut(s)	148, 156
BseAI	TCCGGA	2 cut(s)	148, 156
BseYI	CCCAGC	1 cut(s)	76
BshFI	GGCC	1 cut(s)	31
BsiSI	CCGG	2 cut(s)	149, 157
BsmAI	GTCTC	1 cut(s)	29
BsnI	GGCC	1 cut(s)	31
Bsp13I	TCCGGA	2 cut(s)	148, 156
BspANI	GGCC	1 cut(s)	31
BspEI	TCCGGA	2 cut(s)	148, 156
BspMI	ACCTGC	1 cut(s)	32
Bst4CI	ACNGT	1 cut(s)	22
BstMAI	GTCTC	1 cut(s)	29
BsuI	GTATCC	1 cut(s)	156
BsuRI	GGCC	1 cut(s)	31
BtsIMutI	CAGTG	2 cut(s)	18, 135
BveI	ACCTGC	1 cut(s)	32
CviJI	RGCY	5 cut(s)	31, 76, 99, 162, 224
CviKI_1	RGCY	5 cut(s)	31, 76, 99, 162, 224
DriI	GACNNNNNGTC	1 cut(s)	42
Eam1105I	GACNNNNNGTC	1 cut(s)	42
FaiI	YATR	3 cut(s)	60, 107, 219
GsaI	CCCAGC	1 cut(s)	80
HaeIII	GGCC	1 cut(s)	31
HapII	CCGG	2 cut(s)	149, 157
HpaII	CCGG	2 cut(s)	149, 157
Hpy188III	TCNNGA	4 cut(s)	47, 149, 157, 208
HpyAV	CCTTC	1 cut(s)	118
HpyCH4III	ACNGT	1 cut(s)	22
HpyCH4IV	ACGT	1 cut(s)	10
HpySE526I	ACGT	1 cut(s)	10
Kpn2I	TCCGGA	2 cut(s)	148, 156
LmnI	GCTCC	1 cut(s)	159
LpnPI	CCDG	7 cut(s)	27, 45, 62, 148, 162, 170, 197
LweI	GCATC	1 cut(s)	201
MaeII	ACGT	1 cut(s)	10
MboII	GAAGA	1 cut(s)	94
MluCI	AATT	2 cut(s)	140, 198
MnlI	CCTC	2 cut(s)	24, 109
MroI	TCCGGA	2 cut(s)	148, 156
MroXI	GAANNNNTTC	1 cut(s)	54
MseI	TTAA	2 cut(s)	26, 168
MspI	CCGG	2 cut(s)	149, 157
PdmI	GAANNNNTTC	1 cut(s)	54
PspFI	CCCAGC	1 cut(s)	76
SaqAI	TTAA	2 cut(s)	26, 168
SetI	ASST	5 cut(s)	13, 46, 78, 120, 164
SfaNI	GCATC	1 cut(s)	201
Sse9I	AATT	2 cut(s)	140, 198
TaaI	ACNGT	1 cut(s)	22
TaiI	ACGT	1 cut(s)	13
TaqI	TCGA	1 cut(s)	46
TasI	AATT	2 cut(s)	140, 198
Tru1I	TTAA	2 cut(s)	26, 168
Tru9I	TTAA	2 cut(s)	26, 168
TscAI	CASTG	2 cut(s)	25, 142
TspDTI	ATGAA	2 cut(s)	47, 234
TspRI	CASTG	2 cut(s)	25, 142
XapI	RAATTY	1 cut(s)	198
XmnI	GAANNNNTTC	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.