FvH4_6g48600

ATP-dependent RNA helicase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
36577039 .. 36578510
1472 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g48600.t1

Sequence Viewer

Length: 444 bp
ATGTTTCCATTGAAGCTTGTGCTCATGAGTGCTACCATGCCAGAGGAAGACTTCAGAAAGGTGTTTCCTGATCCACCCCAAGTTATAAATGTTTCGTCCAGACAATTTAAAATATCCAAATTTCATTTTCGTCCTCCTCCAAATGGTGATACTAATGAAGCAGAGGATTGCTTAAAGCTCCTCGAAGCACTTGATAGAAAAGGAGAAGTAACACCTTTAGTAGCAGTGATGCTCTGTCAAGAGCTTATGCTAGTGCGTGGCTATGAACTTTCCAAGAGCGGAATGGGGTGCTGCAAGAAAAATGCTCTTCACCTGGAAACCATGGAGGAAATATCCAAGCTGAGAAAGCAGCTCCTCAAACTTGTCTTTAATCCATTTGGTGTTTATGGAGGTGTGAAGGAATTTTCATGGATCTATGGTAGTCAGAAAGGTGTTGAAACTTGA

Protein Analysis

148

Amino Acids

16.69

Weight (kDa)

8.33

Isoelectric Point (pI)

28.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000599)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33390 AT1G33390
fragaria_vesca FvH4_3g40090 FvH4_3g40090 FvH4_3g40090 FvH4_6g48600
malus_domestica MD04G1241500.v1.1 MD05G1017800.v1.1
prunus_persica Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1
pyrus_communis pycom04g21310 pycom05g01000 pycom05g01050 pycom11g20470
rosa_chinensis RchiOBHm_Chr2g0168421 RchiOBHm_Chr2g0168431 RchiOBHm_Chr2g0168441 RchiOBHm_Chr2g0168451 RchiOBHm_Chr2g0168461 RchiOBHm_Chr4g0407811 RchiOBHm_Chr7g0220161 RchiOBHm_Chr7g0220171 RchiOBHm_Chr7g0220481
rosa_laevigata RLG00000002253 RLG00000008696 RLG00000021781
rosa_multiflora Rmu_co8232135.1_g000001 Rmu_sc0000966.1_g000007 Rmu_sc0003573.1_g000032 Rmu_sc0006361.1_g000012 Rmu_sc0006361.1_g000013 Rmu_sc0012607.1_g000001 Rmu_sc0016657.1_g000009
rosa_roxburghii Rroxscaffold_2G00083000 Rroxscaffold_2G00083010 Rroxscaffold_3G00239750 Rroxscaffold_5G00352370
rosa_rugosa Rorug02G0533800 Rorug02G0533800 Rorug04G0081400 Rorug07G0189900 Rorug07G0190000
rosa_samantha Rh2AG603500 Rh2AG603700 Rh2BG616600 Rh2BG616700 Rh2BG616800 Rh2CG584500 Rh2CG584600 Rh2CG584700 Rh2DG627100 Rh2DG627200 Rh4AG146500 Rh4BG144000 Rh4CG153000 Rh4DG140500 Rh7AG332900 Rh7BG324300 Rh7BG324400 Rh7BG324500 Rh7CG350400 Rh7DG329000
rosa_wichuraiana Rw0G022710 Rw2G050050 Rw4G011990 Rw7G028060 Rw7G028070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 86
AccBSI CCGCTC 1 cut(s) 279
AciI CCGC 1 cut(s) 279
AclWI GGATC 2 cut(s) 65, 419
AcsI RAATTY 2 cut(s) 119, 401
AcuI CTGAAG 1 cut(s) 37
AfiI CCNNNNNNNGG 1 cut(s) 143
AgsI TTSAA 2 cut(s) 13, 437
AjnI CCWGG 1 cut(s) 312
AluBI AGCT 5 cut(s) 16, 178, 244, 340, 352
AluI AGCT 5 cut(s) 16, 178, 244, 340, 352
Alw21I GWGCWC 1 cut(s) 24
AlwI GGATC 2 cut(s) 65, 419
ApeKI GCWGC 2 cut(s) 291, 349
ApoI RAATTY 2 cut(s) 119, 401
AsuHPI GGTGA 2 cut(s) 158, 302
BbsI GAAGAC 1 cut(s) 54
Bbv12I GWGCWC 1 cut(s) 24
BbvI GCAGC 2 cut(s) 278, 361
BciT130I CCWGG 1 cut(s) 314
BfaI CTAG 1 cut(s) 251
BisI GCNGC 2 cut(s) 292, 350
BlsI GCNGC 2 cut(s) 293, 351
Bme1390I CCNGG 1 cut(s) 314
BmrFI CCNGG 1 cut(s) 314
BmsI GCATC 1 cut(s) 219
BpiI GAAGAC 1 cut(s) 54
BsaJI CCNNGG 1 cut(s) 321
Bsc4I CCNNNNNNNGG 1 cut(s) 143
BseBI CCWGG 1 cut(s) 314
BseDI CCNNGG 1 cut(s) 321
BseLI CCNNNNNNNGG 1 cut(s) 143
BseMII CTCAG 1 cut(s) 332
BseRI GAGGAG 3 cut(s) 126, 170, 344
BseXI GCAGC 2 cut(s) 278, 361
BsiHKAI GWGCWC 1 cut(s) 24
BslI CCNNNNNNNGG 1 cut(s) 143
Bsp1286I GDGCHC 1 cut(s) 24
Bsp143I GATC 2 cut(s) 70, 411
Bsp19I CCATGG 1 cut(s) 321
BspACI CCGC 1 cut(s) 279
BspCNI CTCAG 1 cut(s) 333
BspHI TCATGA 1 cut(s) 24
BspPI GGATC 2 cut(s) 65, 419
BspQI GCTCTTC 1 cut(s) 312
BsrBI CCGCTC 1 cut(s) 279
BssECI CCNNGG 1 cut(s) 321
BssMI GATC 2 cut(s) 70, 411
BssT1I CCWWGG 1 cut(s) 321
Bst2UI CCWGG 1 cut(s) 314
Bst6I CTCTTC 1 cut(s) 312
BstDEI CTNAG 1 cut(s) 341
BstDSI CCRYGG 1 cut(s) 321
BstKTI GATC 2 cut(s) 73, 414
BstMBI GATC 2 cut(s) 70, 411
BstMWI GCNNNNNNNGC 1 cut(s) 346
BstNI CCWGG 1 cut(s) 314
BstSCI CCNGG 1 cut(s) 312
BstV1I GCAGC 2 cut(s) 278, 361
BstV2I GAAGAC 1 cut(s) 54
BstX2I RGATCY 1 cut(s) 411
BstYI RGATCY 1 cut(s) 411
BtgI CCRYGG 1 cut(s) 321
BtsI GCAGTG 1 cut(s) 231
BtsIMutI CAGTG 1 cut(s) 231
CciI TCATGA 1 cut(s) 24
CviAII CATG 4 cut(s) 25, 37, 322, 408
CviJI RGCY 6 cut(s) 16, 178, 244, 261, 340, 352
CviKI_1 RGCY 6 cut(s) 16, 178, 244, 261, 340, 352
DdeI CTNAG 1 cut(s) 341
DpnI GATC 2 cut(s) 72, 413
DpnII GATC 2 cut(s) 70, 411
DraI TTTAAA 1 cut(s) 109
Eam1104I CTCTTC 1 cut(s) 312
EarI CTCTTC 1 cut(s) 312
Eco130I CCWWGG 1 cut(s) 321
Eco57I CTGAAG 1 cut(s) 37
EcoRII CCWGG 1 cut(s) 312
EcoT14I CCWWGG 1 cut(s) 321
ErhI CCWWGG 1 cut(s) 321
FaeI CATG 4 cut(s) 28, 40, 325, 411
FaiI YATR 9 cut(s) 26, 38, 86, 248, 264, 323, 387, 409, 417
FatI CATG 4 cut(s) 24, 36, 321, 407
Fnu4HI GCNGC 2 cut(s) 292, 350
Fsp4HI GCNGC 2 cut(s) 292, 350
FspBI CTAG 1 cut(s) 251
GluI GCNGC 2 cut(s) 292, 350
Hin1II CATG 4 cut(s) 28, 40, 325, 411
HindIII AAGCTT 1 cut(s) 14
HphI GGTGA 2 cut(s) 158, 302
Hpy188I TCNGA 2 cut(s) 56, 426
Hpy188III TCNNGA 4 cut(s) 25, 68, 99, 239
HpyAV CCTTC 1 cut(s) 391
HpyCH4V TGCA 1 cut(s) 294
HpyF10VI GCNNNNNNNGC 1 cut(s) 346
HpyF3I CTNAG 1 cut(s) 341
Hsp92II CATG 4 cut(s) 28, 40, 325, 411
Kzo9I GATC 2 cut(s) 70, 411
LguI GCTCTTC 1 cut(s) 312
LmnI GCTCC 2 cut(s) 183, 357
LpnPI CCDG 5 cut(s) 54, 81, 112, 299, 326
Lsp1109I GCAGC 2 cut(s) 278, 361
LweI GCATC 1 cut(s) 219
MaeI CTAG 1 cut(s) 251
MaeIII GTNAC 1 cut(s) 208
MalI GATC 2 cut(s) 72, 413
MbiI CCGCTC 1 cut(s) 279
MboI GATC 2 cut(s) 70, 411
MboII GAAGA 2 cut(s) 59, 299
MflI RGATCY 1 cut(s) 411
MhlI GDGCHC 1 cut(s) 24
MluCI AATT 3 cut(s) 104, 119, 401
MnlI CCTC 8 cut(s) 37, 144, 147, 157, 191, 319, 365, 383
MseI TTAA 3 cut(s) 108, 173, 369
MspR9I CCNGG 1 cut(s) 314
MvaI CCWGG 1 cut(s) 314
MwoI GCNNNNNNNGC 1 cut(s) 346
NcoI CCATGG 1 cut(s) 321
NdeII GATC 2 cut(s) 70, 411
NlaIII CATG 4 cut(s) 28, 40, 325, 411
PagI TCATGA 1 cut(s) 24
PciSI GCTCTTC 1 cut(s) 312
PkrI GCNGC 2 cut(s) 293, 351
PsiI TTATAA 1 cut(s) 86
Psp6I CCWGG 1 cut(s) 312
PspGI CCWGG 1 cut(s) 312
PsuI RGATCY 1 cut(s) 411
SapI GCTCTTC 1 cut(s) 312
SaqAI TTAA 3 cut(s) 108, 173, 369
SatI GCNGC 2 cut(s) 292, 350
Sau3AI GATC 2 cut(s) 70, 411
ScrFI CCNGG 1 cut(s) 314
SduI GDGCHC 1 cut(s) 24
SfaNI GCATC 1 cut(s) 219
Sse9I AATT 3 cut(s) 104, 119, 401
SsiI CCGC 1 cut(s) 279
SspMI CTAG 1 cut(s) 251
StyD4I CCNGG 1 cut(s) 312
StyI CCWWGG 1 cut(s) 321
TaqI TCGA 1 cut(s) 183
TasI AATT 3 cut(s) 104, 119, 401
Tru1I TTAA 3 cut(s) 108, 173, 369
Tru9I TTAA 3 cut(s) 108, 173, 369
TscAI CASTG 1 cut(s) 231
TseI GCWGC 2 cut(s) 291, 349
TspDTI ATGAA 4 cut(s) 113, 171, 279, 396
TspRI CASTG 1 cut(s) 231
XapI RAATTY 2 cut(s) 119, 401
XcmI CCANNNNNNNNNTGG 1 cut(s) 280
XspI CTAG 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.