Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000599

Physical Location & Seq

Genomic Coordinates Reverse (-)

30720505 .. 30729845

Gene Structure 9341 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002253

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3843 bp

ATGATCCGGAGTTCGACGCCCCACCGGAGAGAAAGCGCTAATCCTAAGTTCGACGCCGCACCGGAGGTGCGGATAGAGAGAGACGGAGTTCGACGCCCCACCGGAGAGAAAGCGCTAATCCTAAGTTCGACGCCGCACCGGAGGGAGGGGAGCTGGCTGATGAACATGTTGCCAGAAAACAGAAGGAATAATAAAAGAAAGCGAACCAATGAGAATGAGGAATGTCAGAAACTTCGAGAAACCCAGAGGATGAGCACATCTCACAACAAAAGGAAGCTCAAGAAGTTGAAGGAGGAGAAGGAAAACGACCTTGTGCTATCAAAAAGCGTTGAGGCGTTAGAGAAATATAAGATTCCAGAAGGTGCACGGGCTCTTCTCCAGTCATCACGAAATATTGGCCAGGTTGAGTCCAGAAAGGTTAAACGCAGCAAAGGTTTACTGCACTTGAAAATTACATCCCATGCTTCCAGTGAAAGTGAACCTGAGTCGGAGATAACTCAATCAACACAGGATCAATCGTTAATGGTACAAAAGAACACATCTACTTGTTCGGACTCCTCTACAATGCTACTTTGTGGCACAAGGCCTCCTGATATTCGTAACAAGTCTTTACCAGAAGATGGAACTTCTAGCATGGATCGTAACTGGAGTGAAAGCATAAACTTCATGGATAAAGTAGAAGAGAGTCCTCAGTCAAGTTACAGCTCAAAGCTTCCTGCACCAAGTATTCTGAAAGATCCAAAAAATAGGCGGCATGTATCAAGACCTCCTGAAGTGGTAAAGGCAAGGAGTGATATTCCTATTATAATGATGGAGCAAGAGATAATGGAGGCCATAAATGAAAATTCCACAGTTATTATACACGGAGAGACTGGATGTGGTAAAACAACCCAAGTTCCACAGTTTCTTTATGAAGTTGGCATTGGTTCAAGTGTGTCTCCTCTTGGAAGTGGTATCCTTGGTGTTACTCAACCCCGTCGCATTGCAGTCTGTGCTACTGCTAGTCGTGTGGCATATGAGCTTGGTGTACGCGTGGGTGAGGAGGTTGGATATCAAGTTAGATATGACAAAAAGATAGGCAAAAGTTGCTCCGTCAACTTCATGACAGATGGAATATTGCTACGAGAACTCCAGGGTGATTTTTGGTTGAAGAGATACTCTGTGATAATTCTTGATGAGGTGCATGAGCGGAACTTGAGCACAGATACACTCATTGGAATGCTTTCACGTGTTATCATTTGTCGTCAGAAAGAGTATGAACGTCAGCAGGAGTTTTTGCAGCAGTACTCGCATTTAGGAATATCTACAGATCGGGAGAAACTTGTTTTTCCACTGAAGCTTGTGCTTATGAGTGCTACCATGCCAGTGGAAGACTTCATTTCTTATAGGAAGCTGTTTCCTGACCCCCCACAAGAGATAAATGTTTTGTCTAGACAATTTAAAGTAGACATTCAGTTCTCAGCGACAACTAAAGCTGATTATACTAAGGAAGCATGTAAAAAGGTCTTGGAAATTCACAAGAATATGCCACAAGGAGGCATACTTGTGTTTGTCACTGGGTACTGGGAAGTGGAGGTATTGTGTAAAAAGCTACGTAGAGCTTCAAGGGAACTGACTATGAAAATAAAAAAAGGGTGTTGTGTGATGGAAGGTTCTGTAATAAACTCTGTTGGAAAGATAAATATGAAGGAGAACAGCGAAGCATTTCATTCAGCCAACCATCAGAATGATGTATTTAGTTACACTGATGAAGATCAGTGCGAGGTAGATGACGATGAGTTTGGTTCTTCGTATGATACAGAAACAGAGAGTGAGCTGGAAATTATTGGTGACGATGGGGATTCATTGTGTCAAGATACCCCAGAAGTCGATGGTGAGGTTGCACAGATTTTAGGAGAGAACGTGAGCATTGCATCACTGAAAGCCTCTTTTGAATCATTGGCTGGAAAATCTTCTTCACATTCTACTTCTTGCAAAGAACCTATTTCACGAACTCTAGACTCTTGCTCTAGCCAATCCAATCATAGTCGCAGCTTGGGGAAAAAAGATGCGGTTGTAGACGATAGTTTTCCAGGCTCTCTGCGTGTTCTTCCTCTTTATTCCATGCTGCCTGCAGCAGCTCAGCATCGTGTATTTGATAAAGTAAAGGAGGGAGAACGGCTTGTTGTTGTGGCCACCAATGTTGCTGAAACCTCTGTCACTATTCCTGGGATAAAGTATGTTGTCGATAGTGGAAAAGTGAAATCGAAGGAATACAACTTTAAAAATGGAAGTGAAATGTATAAAGTGCAGTGGATTAGTAAGGCGTCGGCTGTTCAACGTGCAGGAAGAGCTGGAAGAACAGGGCCTGGTCACTGTTTCCGCCTTTATTCTTCGGCAGCATTTAATAATATCTTCAATGACAGTTCCCCATCTGAAATATCCAAAGTCCCTCTTGAAGGTCTTATCCTTCTTTTGAAGTCCATGGACATTGAGTTGTCTGCTTTTCCTTTTCTTACTCGTCCAAACGATGATGCTCTTAATGGAGGACAGCGTTGCTTGGAGATCATTGAAGCGCTTACTGAGGATGGAGAAGTGACACCTCTAGGGAAGGCCATGGCTTATTATCCCATAAGTCCTCGCCACTCTAAGATGCTCCTAACAGTCATCAAAATGTTGAATAAGGAGAAAAGTTATAAACGACCTAATTTAGTACTAGCATATGCAGTTGCTTCAGCTGCAGCTTTGAGTTTGTCAAATATTTTTGTTAGTCAGTTTGAAGACAGTTGCACAGAAAACCATGACTTAATTGATGGAAATTCCAGTGCTCCAGTTCACGGTGAAGTTATAGACAAGCAAGAGAGAGTGATCAAAGAGAAGAAAGTGAGAGCGTCTTGTGAAAATTTTAGTAGTCATAGCAGTGATGCCCTTTCCAGAGCTTATGTTTTACGGCTCTATGAACTTTCCAAGAGCCGATTGCATTTCTGCAAGGACAATGCTCTACACCCAGAAACCATGCATGAAATATCCGGGCTGAGAGAGCAGCTACTCAAACTTGTCTTTTATCATAGTTGTGTGTCTGGCGGTGAATTTTCATGGATCCATGGTAGTCGGGAAGATGTTGAGCATGATTGGAGGGCTGATGTTATCCCTCTTTCTTTGGATGAGGAAGGCCTCTTGTGCCGGGCCATCTGTGCTGGTTGGGCAGATAGAGTTGCCAAGCGCATTAAAGGAAGTAAAAATCAATATCAAACCTGCTTGAGTAATGAGAATGTCTTCCTCGACCGCCAGTCATCTGTTTCTAAAATTGCTCCTGAATATTTGGTGTACAGTGAGTTGATACAGAAAAAGAAACCATACATGCACGGTGTTACTTGTATCGAACCAGAATGGCTTGTTGACTGTGGTCAGGTCTTATGCAAGCTTCCAAAGGGCAGTGCACCTTACTATGACCGTGTAAGTGACAAGGTACTATACAATGTCACTCCAACCTTTGGTCCTCATTTGTGGAAGCTTCCTGAACATTGTTTGCCTATTGATAAGACTGAGTTTAAAGGTGCAGTGCAAGCTTTTGCTTTTGCTTTGTTGGACGGCAAGGTTTTGCGTTGCCTGAGACCTGTGCGTGCATTCATGGCAGAACATCCTCGTACTGTTTTAAAGCCGGTGGCAGCAAATCGAGAACGGGTTCAGAATCTCTTGTTGAAGTTGGGGGAGAAGAAGATACACAGCCGTGCTATGTTGAGAGAGGTGTGGAGTAAAAATCCCAACGAATTGTATCTGGAAATCCGGAACTGGTTTAGAAAGAATTTCCACTGTAAGTTTAAGGATATTTGGGTCGAAATGCTTCGCGAAGCCATTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

1281

Amino Acids

144.34

Weight (kDa)

8.39

Isoelectric Point (pI)

46.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	693 - 782	1e-10	Helicase conserved C-terminal domain
WHD_HA2	PF04408	845 - 871	3.8e-06	Helicase associated domain (HA2), winged-helix
OB_NTP_bind	PF07717	1053 - 1128	1.2e-17	Oligonucleotide/oligosaccharide-binding (OB)-fold
DHX37_C	PF23362	1197 - 1274	1.6e-15	DEAH helicase DHX37 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33390 AT1G33390
fragaria_vesca	FvH4_3g40090 FvH4_3g40090 FvH4_3g40090 FvH4_6g48600
malus_domestica	MD04G1241500.v1.1 MD05G1017800.v1.1
prunus_persica	Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1
pyrus_communis	pycom04g21310 pycom05g01000 pycom05g01050 pycom11g20470
rosa_chinensis	RchiOBHm_Chr2g0168421 RchiOBHm_Chr2g0168431 RchiOBHm_Chr2g0168441 RchiOBHm_Chr2g0168451 RchiOBHm_Chr2g0168461 RchiOBHm_Chr4g0407811 RchiOBHm_Chr7g0220161 RchiOBHm_Chr7g0220171 RchiOBHm_Chr7g0220481
rosa_laevigata	RLG00000002253 RLG00000008696 RLG00000021781
rosa_multiflora	Rmu_co8232135.1_g000001 Rmu_sc0000966.1_g000007 Rmu_sc0003573.1_g000032 Rmu_sc0006361.1_g000012 Rmu_sc0006361.1_g000013 Rmu_sc0012607.1_g000001 Rmu_sc0016657.1_g000009
rosa_roxburghii	Rroxscaffold_2G00083000 Rroxscaffold_2G00083010 Rroxscaffold_3G00239750 Rroxscaffold_5G00352370
rosa_rugosa	Rorug02G0533800 Rorug02G0533800 Rorug04G0081400 Rorug07G0189900 Rorug07G0190000
rosa_samantha	Rh2AG603500 Rh2AG603700 Rh2BG616600 Rh2BG616700 Rh2BG616800 Rh2CG584500 Rh2CG584600 Rh2CG584700 Rh2DG627100 Rh2DG627200 Rh4AG146500 Rh4BG144000 Rh4CG153000 Rh4DG140500 Rh7AG332900 Rh7BG324300 Rh7BG324400 Rh7BG324500 Rh7CG350400 Rh7DG329000
rosa_wichuraiana	Rw0G022710 Rw2G050050 Rw4G011990 Rw7G028060 Rw7G028070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	806, 2676
Acc36I	ACCTGC	1 cut(s)	3242
AccB7I	CCANNNNNTGG	2 cut(s)	620, 3473
AccBSI	CCGCTC	1 cut(s)	1189
AccI	GTMKAC	2 cut(s)	1446, 2058
AccII	CGCG	2 cut(s)	1032, 3828
AccIII	TCCGGA	2 cut(s)	6, 3765
AciI	CCGC	9 cut(s)	57, 70, 134, 751, 1189, 2051, 2362, 3063, 3265
AclWI	GGATC	5 cut(s)	519, 645, 731, 3073, 3086
AcoI	YGGCCR	2 cut(s)	397, 2172
AcsI	RAATTY	6 cut(s)	844, 1512, 2797, 2881, 3068, 3784
AcuI	CTGAAG	3 cut(s)	792, 1355, 2697
AcvI	CACGTG	1 cut(s)	1229
AcyI	GRCGYC	5 cut(s)	17, 54, 94, 131, 2306
AfaI	GTAC	8 cut(s)	528, 1029, 1286, 1562, 2694, 3308, 3450, 3628
AfeI	AGCGCT	3 cut(s)	37, 114, 2556
AfiI	CCNNNNNNNGG	6 cut(s)	145, 620, 1535, 2438, 2816, 3473
AflIII	ACRYGT	3 cut(s)	165, 1030, 1228
AhdI	GACNNNNNGTC	1 cut(s)	3268
AjnI	CCWGG	5 cut(s)	399, 1131, 2071, 2206, 2347
AjuI	GAANNNNNNNTTGG	2 cut(s)	906, 938
AleI	CACNNNNGTG	1 cut(s)	3708
Alw21I	GWGCWC	5 cut(s)	257, 367, 1202, 2809, 3421
Alw26I	GTCTC	4 cut(s)	75, 863, 942, 3586
Alw44I	GTGCAC	2 cut(s)	363, 3417
AlwI	GGATC	5 cut(s)	519, 645, 731, 3073, 3086
AlwNI	CAGNNNCTG	1 cut(s)	2348
Aor13HI	TCCGGA	2 cut(s)	6, 3765
Aor51HI	AGCGCT	3 cut(s)	37, 114, 2556
AoxI	GGCC	8 cut(s)	397, 584, 831, 2172, 2345, 2592, 3151, 3165
ApaLI	GTGCAC	2 cut(s)	363, 3417
ApoI	RAATTY	6 cut(s)	844, 1512, 2797, 2881, 3068, 3784
ArsI	GACNNNNNNTTYG	2 cut(s)	1763, 1795
Asp700I	GAANNNNTTC	6 cut(s)	1222, 1704, 1951, 3254, 3663, 3822
AspLEI	GCGC	4 cut(s)	38, 115, 2557, 3204
AspS9I	GGNCC	3 cut(s)	2345, 3165, 3476
AsuC2I	CCSGG	2 cut(s)	3010, 3164
AsuHPI	GGTGA	6 cut(s)	1049, 1148, 1841, 1886, 2831, 3077
AvaII	GGWCC	1 cut(s)	3476
BaeGI	GKGCMC	2 cut(s)	367, 3421
BalI	TGGCCA	2 cut(s)	399, 2174
BamHI	GGATCC	1 cut(s)	3078
BanII	GRGCYC	1 cut(s)	373
BbrPI	CACGTG	1 cut(s)	1229
BbsI	GAAGAC	3 cut(s)	1377, 2766, 3247
Bbv12I	GWGCWC	5 cut(s)	257, 367, 1202, 2809, 3421
BceAI	ACGGC	4 cut(s)	2174, 2945, 3586, 3693
BciT130I	CCWGG	5 cut(s)	401, 1133, 2073, 2208, 2349
BciVI	GTATCC	1 cut(s)	965
BclI	TGATCA	1 cut(s)	2847
BcnI	CCSGG	2 cut(s)	3010, 3164
BcoDI	GTCTC	4 cut(s)	75, 863, 942, 3586
BfaI	CTAG	7 cut(s)	630, 1002, 1431, 1997, 2010, 2585, 2696
BfmI	CTRYAG	3 cut(s)	1305, 2112, 2718
BfoI	RGCGCY	3 cut(s)	39, 116, 2558
BfuAI	ACCTGC	1 cut(s)	3242
BfuI	GTATCC	1 cut(s)	965
BlpI	GCTNAGC	1 cut(s)	2121
BmcAI	AGTACT	2 cut(s)	1286, 2694
Bme1390I	CCNGG	7 cut(s)	401, 1133, 2073, 2208, 2349, 3010, 3164
Bme18I	GGWCC	1 cut(s)	3476
BmeRI	GACNNNNNGTC	1 cut(s)	3268
BmgT120I	GGNCC	3 cut(s)	2345, 3165, 3476
BmiI	GGNNCC	1 cut(s)	3080
BmrFI	CCNGG	7 cut(s)	401, 1133, 2073, 2208, 2349, 3010, 3164
BmrI	ACTGGG	2 cut(s)	1566, 1573
BmsI	GCATC	6 cut(s)	1922, 2038, 2134, 2503, 2622, 2893
BmuI	ACTGGG	2 cut(s)	1566, 1573
BoxI	GACNNNNGTC	1 cut(s)	3384
BpiI	GAAGAC	3 cut(s)	1377, 2766, 3247
BplI	GAGNNNNNCTC	2 cut(s)	244, 276
BpmI	CTGGAG	4 cut(s)	362, 667, 1115, 2793
Bpu1102I	GCTNAGC	1 cut(s)	2121
BpuEI	CTTGAG	3 cut(s)	263, 1216, 3259
BpuMI	CCSGG	2 cut(s)	3010, 3164
BsaAI	YACGTR	2 cut(s)	1229, 1595
BsaBI	GATNNNNATC	1 cut(s)	1752
BsaHI	GRCGYC	5 cut(s)	17, 54, 94, 131, 2306
BsaI	GGTCTC	1 cut(s)	3586
BsaJI	CCNNGG	6 cut(s)	958, 1132, 2207, 2463, 2595, 3082
BsaWI	WCCGGW	6 cut(s)	6, 24, 61, 101, 138, 3765
BsaXI	ACNNNNNCTCC	8 cut(s)	571, 601, 1113, 1143, 1565, 1595, 1887, 1917
Bsc4I	CCNNNNNNNGG	6 cut(s)	145, 620, 1535, 2438, 2816, 3473
Bse118I	RCCGGY	1 cut(s)	3640
Bse3DI	GCAATG	2 cut(s)	981, 1908
Bse8I	GATNNNNATC	1 cut(s)	1752
BseAI	TCCGGA	2 cut(s)	6, 3765
BseBI	CCWGG	5 cut(s)	401, 1133, 2073, 2208, 2349
BseDI	CCNNGG	6 cut(s)	958, 1132, 2207, 2463, 2595, 3082
BseGI	GGATG	6 cut(s)	255, 455, 881, 2572, 3148, 3619
BseJI	GATNNNNATC	1 cut(s)	1752
BseLI	CCNNNNNNNGG	6 cut(s)	145, 620, 1535, 2438, 2816, 3473
BseMI	GCAATG	2 cut(s)	981, 1908
BseMII	CTCAG	8 cut(s)	474, 704, 1473, 2135, 2553, 3005, 3516, 3581
BseRI	GAGGAG	4 cut(s)	308, 547, 930, 1055
BseSI	GKGCMC	2 cut(s)	367, 3421
BsgI	GTGCAG	5 cut(s)	425, 702, 2309, 2343, 3558
Bsh1236I	CGCG	2 cut(s)	1032, 3828
Bsh1285I	CGRYCG	1 cut(s)	3265
BshFI	GGCC	8 cut(s)	399, 586, 833, 2174, 2347, 2594, 3153, 3167
BsiEI	CGRYCG	1 cut(s)	3265
BsiHKAI	GWGCWC	5 cut(s)	257, 367, 1202, 2809, 3421
BsiSI	CCGG	9 cut(s)	7, 25, 62, 102, 139, 3009, 3163, 3641, 3766
BslFI	GGGAC	1 cut(s)	2414
BslI	CCNNNNNNNGG	6 cut(s)	145, 620, 1535, 2438, 2816, 3473
BsmAI	GTCTC	4 cut(s)	75, 863, 942, 3586
BsmBI	CGTCTC	1 cut(s)	75
BsmFI	GGGAC	1 cut(s)	2414
BsmI	GAATGC	2 cut(s)	1224, 3605
BsnI	GGCC	8 cut(s)	399, 586, 833, 2174, 2347, 2594, 3153, 3167
Bso31I	GGTCTC	1 cut(s)	3586
Bsp1286I	GDGCHC	6 cut(s)	257, 367, 373, 1202, 2809, 3421
Bsp13I	TCCGGA	2 cut(s)	6, 3765
Bsp1407I	TGTACA	1 cut(s)	3306
Bsp143I	GATC	9 cut(s)	3, 511, 637, 736, 1309, 1753, 2544, 2847, 3078
Bsp1720I	GCTNAGC	1 cut(s)	2121
Bsp19I	CCATGG	3 cut(s)	2463, 2595, 3082
Bsp68I	TCGCGA	1 cut(s)	3828
BspACI	CCGC	9 cut(s)	57, 70, 134, 751, 1189, 2051, 2362, 3063, 3265
BspANI	GGCC	8 cut(s)	399, 586, 833, 2174, 2347, 2594, 3153, 3167
BspCNI	CTCAG	8 cut(s)	475, 703, 1472, 2134, 2554, 3006, 3517, 3582
BspEI	TCCGGA	2 cut(s)	6, 3765
BspFNI	CGCG	2 cut(s)	1032, 3828
BspHI	TCATGA	1 cut(s)	1101
BspLI	GGNNCC	1 cut(s)	3080
BspMAI	CTGCAG	2 cut(s)	2116, 2722
BspMI	ACCTGC	1 cut(s)	3242
BspPI	GGATC	5 cut(s)	519, 645, 731, 3073, 3086
BspQI	GCTCTTC	2 cut(s)	378, 2323
BspTNI	GGTCTC	1 cut(s)	3586
BsrBI	CCGCTC	1 cut(s)	1189
BsrDI	GCAATG	2 cut(s)	981, 1908
BsrFI	RCCGGY	1 cut(s)	3640
BsrGI	TGTACA	1 cut(s)	3306
BssAI	RCCGGY	1 cut(s)	3640
BssECI	CCNNGG	6 cut(s)	958, 1132, 2207, 2463, 2595, 3082
BssMI	GATC	9 cut(s)	3, 511, 637, 736, 1309, 1753, 2544, 2847, 3078
BssNI	GRCGYC	5 cut(s)	17, 54, 94, 131, 2306
BssT1I	CCWWGG	4 cut(s)	958, 2463, 2595, 3082
Bst2UI	CCWGG	5 cut(s)	401, 1133, 2073, 2208, 2349
Bst6I	CTCTTC	4 cut(s)	378, 675, 1145, 2323
BstACI	GRCGYC	5 cut(s)	17, 54, 94, 131, 2306
BstAPI	GCANNNNNTGC	2 cut(s)	992, 1086
BstAUI	TGTACA	1 cut(s)	3306
BstBAI	YACGTR	2 cut(s)	1229, 1595
BstC8I	GCNNGC	5 cut(s)	155, 2112, 3401, 3546, 3603
BstDSI	CCRYGG	3 cut(s)	2463, 2595, 3082
BstENI	CCTNNNNNAGG	1 cut(s)	2436
BstF5I	GGATG	6 cut(s)	255, 455, 881, 2572, 3148, 3619
BstFNI	CGCG	2 cut(s)	1032, 3828
BstH2I	RGCGCY	3 cut(s)	39, 116, 2558
BstHHI	GCGC	4 cut(s)	38, 115, 2557, 3204
BstKTI	GATC	9 cut(s)	6, 514, 640, 739, 1312, 1756, 2547, 2850, 3081
BstMAI	GTCTC	4 cut(s)	75, 863, 942, 3586
BstMBI	GATC	9 cut(s)	3, 511, 637, 736, 1309, 1753, 2544, 2847, 3078
BstMCI	CGRYCG	1 cut(s)	3265
BstNI	CCWGG	5 cut(s)	401, 1133, 2073, 2208, 2349
BstNSI	RCATGY	4 cut(s)	169, 758, 1497, 3343
BstPAI	GACNNNNGTC	1 cut(s)	3384
BstSCI	CCNGG	7 cut(s)	399, 1131, 2071, 2206, 2347, 3008, 3162
BstSFI	CTRYAG	3 cut(s)	1305, 2112, 2718
BstSLI	GKGCMC	2 cut(s)	367, 3421
BstSNI	TACGTA	1 cut(s)	1595
BstUI	CGCG	2 cut(s)	1032, 3828
BstV2I	GAAGAC	3 cut(s)	1377, 2766, 3247
BstX2I	RGATCY	2 cut(s)	736, 3078
BstXI	CCANNNNNNTGG	1 cut(s)	1366
BstYI	RGATCY	2 cut(s)	736, 3078
BsuI	GTATCC	1 cut(s)	965
BsuRI	GGCC	8 cut(s)	399, 586, 833, 2174, 2347, 2594, 3153, 3167
BtgI	CCRYGG	3 cut(s)	2463, 2595, 3082
BtsCI	GGATG	6 cut(s)	255, 455, 881, 2572, 3148, 3619
BtsI	GCAGTG	4 cut(s)	2297, 2905, 3421, 3546
BtuMI	TCGCGA	1 cut(s)	3828
BveI	ACCTGC	1 cut(s)	3242
Cac8I	GCNNGC	5 cut(s)	155, 2112, 3401, 3546, 3603
CaiI	CAGNNNCTG	1 cut(s)	2348
CciI	TCATGA	1 cut(s)	1101
CfoI	GCGC	4 cut(s)	38, 115, 2557, 3204
Cfr10I	RCCGGY	1 cut(s)	3640
Cfr13I	GGNCC	3 cut(s)	2345, 3165, 3476
CseI	GACGC	6 cut(s)	25, 62, 102, 139, 2295, 2859
Csp6I	GTAC	8 cut(s)	527, 1028, 1285, 1561, 2693, 3307, 3449, 3627
CspCI	CAANNNNNGTGG	2 cut(s)	2164, 2199
CviQI	GTAC	8 cut(s)	527, 1028, 1285, 1561, 2693, 3307, 3449, 3627
DpnI	GATC	9 cut(s)	5, 513, 639, 738, 1311, 1755, 2546, 2849, 3080
DpnII	GATC	9 cut(s)	3, 511, 637, 736, 1309, 1753, 2544, 2847, 3078
DraI	TTTAAA	4 cut(s)	1441, 2263, 3532, 3636
DriI	GACNNNNNGTC	1 cut(s)	3268
EaeI	YGGCCR	2 cut(s)	397, 2172
Eam1104I	CTCTTC	4 cut(s)	378, 675, 1145, 2323
Eam1105I	GACNNNNNGTC	1 cut(s)	3268
EarI	CTCTTC	4 cut(s)	378, 675, 1145, 2323
EciI	GGCGGA	1 cut(s)	2351
Eco105I	TACGTA	1 cut(s)	1595
Eco130I	CCWWGG	4 cut(s)	958, 2463, 2595, 3082
Eco147I	AGGCCT	2 cut(s)	586, 3153
Eco24I	GRGCYC	1 cut(s)	373
Eco31I	GGTCTC	1 cut(s)	3586
Eco32I	GATATC	1 cut(s)	1052
Eco47I	GGWCC	1 cut(s)	3476
Eco47III	AGCGCT	3 cut(s)	37, 114, 2556
Eco57I	CTGAAG	3 cut(s)	792, 1355, 2697
Eco72I	CACGTG	1 cut(s)	1229
EcoNI	CCTNNNNNAGG	1 cut(s)	2436
EcoO109I	RGGNCCY	1 cut(s)	2345
EcoRII	CCWGG	5 cut(s)	399, 1131, 2071, 2206, 2347
EcoRV	GATATC	1 cut(s)	1052
EcoT14I	CCWWGG	4 cut(s)	958, 2463, 2595, 3082
EcoT22I	ATGCAT	1 cut(s)	3000
EcoT38I	GRGCYC	1 cut(s)	373
ErhI	CCWWGG	4 cut(s)	958, 2463, 2595, 3082
Esp3I	CGTCTC	1 cut(s)	75
FalI	AAGNNNNNCTT	2 cut(s)	2418, 2450
FaqI	GGGAC	1 cut(s)	2414
FauNDI	CATATG	2 cut(s)	1015, 2701
FbaI	TGATCA	1 cut(s)	2847
FblI	GTMKAC	2 cut(s)	1446, 2058
FokI	GGATG	6 cut(s)	262, 442, 888, 2579, 3155, 3606
FriOI	GRGCYC	1 cut(s)	373
FspBI	CTAG	7 cut(s)	630, 1002, 1431, 1997, 2010, 2585, 2696
GlaI	GCGC	4 cut(s)	37, 114, 2556, 3203
GsuI	CTGGAG	4 cut(s)	362, 667, 1115, 2793
HaeII	RGCGCY	3 cut(s)	39, 116, 2558
HaeIII	GGCC	8 cut(s)	399, 586, 833, 2174, 2347, 2594, 3153, 3167
HapII	CCGG	9 cut(s)	7, 25, 62, 102, 139, 3009, 3163, 3641, 3766
HgaI	GACGC	6 cut(s)	25, 62, 102, 139, 2295, 2859
HhaI	GCGC	4 cut(s)	38, 115, 2557, 3204
Hin1I	GRCGYC	5 cut(s)	17, 54, 94, 131, 2306
Hin6I	GCGC	4 cut(s)	36, 113, 2555, 3202
HinP1I	GCGC	4 cut(s)	36, 113, 2555, 3202
HincII	GTYRAC	2 cut(s)	1096, 3379
HindII	GTYRAC	2 cut(s)	1096, 3379
HindIII	AAGCTT	5 cut(s)	710, 1337, 3401, 3491, 3546
HinfI	GANTC	9 cut(s)	352, 407, 485, 554, 685, 1841, 1934, 2000, 3670
HpaII	CCGG	9 cut(s)	7, 25, 62, 102, 139, 3009, 3163, 3641, 3766
HphI	GGTGA	6 cut(s)	1049, 1148, 1841, 1886, 2831, 3077
Hpy188I	TCNGA	8 cut(s)	228, 490, 553, 732, 1248, 1725, 2416, 3669
Hpy99I	CGWCG	6 cut(s)	19, 56, 96, 133, 981, 2311
HpyCH4IV	ACGT	5 cut(s)	1228, 1261, 1594, 1902, 2320
HpySE526I	ACGT	5 cut(s)	1228, 1261, 1594, 1902, 2320
Hsp92I	GRCGYC	5 cut(s)	17, 54, 94, 131, 2306
HspAI	GCGC	4 cut(s)	36, 113, 2555, 3202
Kpn2I	TCCGGA	2 cut(s)	6, 3765
Ksp22I	TGATCA	1 cut(s)	2847
Kzo9I	GATC	9 cut(s)	3, 511, 637, 736, 1309, 1753, 2544, 2847, 3078
LguI	GCTCTTC	2 cut(s)	378, 2323
LmnI	GCTCC	6 cut(s)	150, 814, 1094, 2640, 2812, 3295
LweI	GCATC	6 cut(s)	1922, 2038, 2134, 2503, 2622, 2893
MaeI	CTAG	7 cut(s)	630, 1002, 1431, 1997, 2010, 2585, 2696
MaeII	ACGT	5 cut(s)	1228, 1261, 1594, 1902, 2320
MalI	GATC	9 cut(s)	5, 513, 639, 738, 1311, 1755, 2546, 2849, 3080
MbiI	CCGCTC	1 cut(s)	1189
MboI	GATC	9 cut(s)	3, 511, 637, 736, 1309, 1753, 2544, 2847, 3078
MflI	RGATCY	2 cut(s)	736, 3078
MhlI	GDGCHC	6 cut(s)	257, 367, 373, 1202, 2809, 3421
MlsI	TGGCCA	2 cut(s)	399, 2174
MluI	ACGCGT	1 cut(s)	1030
MluNI	TGGCCA	2 cut(s)	399, 2174
MlyI	GAGTC	5 cut(s)	416, 494, 548, 694, 1994
MmeI	TCCRAC	5 cut(s)	468, 1027, 1651, 3491, 3546
Mox20I	TGGCCA	2 cut(s)	399, 2174
Mph1103I	ATGCAT	1 cut(s)	3000
MroI	TCCGGA	2 cut(s)	6, 3765
MroXI	GAANNNNTTC	6 cut(s)	1222, 1704, 1951, 3254, 3663, 3822
MscI	TGGCCA	2 cut(s)	399, 2174
MslI	CAYNNNNRTG	8 cut(s)	1217, 1364, 1544, 1725, 2651, 2898, 3051, 3708
Msp20I	TGGCCA	2 cut(s)	399, 2174
MspA1I	CMGCKG	1 cut(s)	2717
MspI	CCGG	9 cut(s)	7, 25, 62, 102, 139, 3009, 3163, 3641, 3766
MspR9I	CCNGG	7 cut(s)	401, 1133, 2073, 2208, 2349, 3010, 3164
Mva1269I	GAATGC	2 cut(s)	1224, 3605
MvaI	CCWGG	5 cut(s)	401, 1133, 2073, 2208, 2349
MvnI	CGCG	2 cut(s)	1032, 3828
NciI	CCSGG	2 cut(s)	3010, 3164
NcoI	CCATGG	3 cut(s)	2463, 2595, 3082
NdeI	CATATG	2 cut(s)	1015, 2701
NdeII	GATC	9 cut(s)	3, 511, 637, 736, 1309, 1753, 2544, 2847, 3078
NlaIV	GGNNCC	1 cut(s)	3080
NmuCI	GTSAC	7 cut(s)	1552, 1829, 2197, 2351, 2575, 3440, 3460
NruI	TCGCGA	1 cut(s)	3828
NsiI	ATGCAT	1 cut(s)	3000
NspI	RCATGY	4 cut(s)	169, 758, 1497, 3343
OliI	CACNNNNGTG	1 cut(s)	3708
PagI	TCATGA	1 cut(s)	1101
PceI	AGGCCT	2 cut(s)	586, 3153
PciI	ACATGT	1 cut(s)	165
PciSI	GCTCTTC	2 cut(s)	378, 2323
PctI	GAATGC	2 cut(s)	1224, 3605
PdmI	GAANNNNTTC	6 cut(s)	1222, 1704, 1951, 3254, 3663, 3822
PfeI	GAWTC	4 cut(s)	352, 1841, 1934, 3670
PflMI	CCANNNNNTGG	2 cut(s)	620, 3473
PleI	GAGTC	5 cut(s)	415, 493, 548, 693, 1994
PmaCI	CACGTG	1 cut(s)	1229
PmlI	CACGTG	1 cut(s)	1229
PpsI	GAGTC	5 cut(s)	415, 493, 548, 693, 1994
Ppu21I	YACGTR	2 cut(s)	1229, 1595
PscI	ACATGT	1 cut(s)	165
PshAI	GACNNNNGTC	1 cut(s)	3384
PsiI	TTATAA	2 cut(s)	806, 2676
Psp6I	CCWGG	5 cut(s)	399, 1131, 2071, 2206, 2347
PspCI	CACGTG	1 cut(s)	1229
PspGI	CCWGG	5 cut(s)	399, 1131, 2071, 2206, 2347
PspN4I	GGNNCC	1 cut(s)	3080
PspPI	GGNCC	3 cut(s)	2345, 3165, 3476
PstI	CTGCAG	2 cut(s)	2116, 2722
PstNI	CAGNNNCTG	1 cut(s)	2348
PsuI	RGATCY	2 cut(s)	736, 3078
PvuII	CAGCTG	1 cut(s)	2717
RruI	TCGCGA	1 cut(s)	3828
RsaI	GTAC	8 cut(s)	528, 1029, 1286, 1562, 2694, 3308, 3450, 3628
RsaNI	GTAC	8 cut(s)	527, 1028, 1285, 1561, 2693, 3307, 3449, 3627
RseI	CAYNNNNRTG	8 cut(s)	1217, 1364, 1544, 1725, 2651, 2898, 3051, 3708
SapI	GCTCTTC	2 cut(s)	378, 2323
Sau3AI	GATC	9 cut(s)	3, 511, 637, 736, 1309, 1753, 2544, 2847, 3078
Sau96I	GGNCC	3 cut(s)	2345, 3165, 3476
ScaI	AGTACT	2 cut(s)	1286, 2694
SchI	GAGTC	5 cut(s)	416, 494, 548, 694, 1994
ScrFI	CCNGG	7 cut(s)	401, 1133, 2073, 2208, 2349, 3010, 3164
SduI	GDGCHC	6 cut(s)	257, 367, 373, 1202, 2809, 3421
SfaNI	GCATC	6 cut(s)	1922, 2038, 2134, 2503, 2622, 2893
SfcI	CTRYAG	3 cut(s)	1305, 2112, 2718
SinI	GGWCC	1 cut(s)	3476
SmiMI	CAYNNNNRTG	8 cut(s)	1217, 1364, 1544, 1725, 2651, 2898, 3051, 3708
SmlI	CTYRAG	3 cut(s)	278, 1195, 3238
SmoI	CTYRAG	3 cut(s)	278, 1195, 3238
SnaBI	TACGTA	1 cut(s)	1595
SseBI	AGGCCT	2 cut(s)	586, 3153
SsiI	CCGC	9 cut(s)	57, 70, 134, 751, 1189, 2051, 2362, 3063, 3265
SspI	AATATT	4 cut(s)	394, 1116, 2740, 3299
SspMI	CTAG	7 cut(s)	630, 1002, 1431, 1997, 2010, 2585, 2696
StuI	AGGCCT	2 cut(s)	586, 3153
StyD4I	CCNGG	7 cut(s)	399, 1131, 2071, 2206, 2347, 3008, 3162
StyI	CCWWGG	4 cut(s)	958, 2463, 2595, 3082
TaiI	ACGT	5 cut(s)	1231, 1264, 1597, 1905, 2323
TatI	WGTACW	3 cut(s)	1284, 2692, 3306
TauI	GCSGC	3 cut(s)	59, 136, 754
TfiI	GAWTC	4 cut(s)	352, 1841, 1934, 3670
TseFI	GTSAC	7 cut(s)	1552, 1829, 2197, 2351, 2575, 3440, 3460
Tsp45I	GTSAC	7 cut(s)	1552, 1829, 2197, 2351, 2575, 3440, 3460
TspGWI	ACGGA	3 cut(s)	99, 879, 1081
Van91I	CCANNNNNTGG	2 cut(s)	620, 3473
VneI	GTGCAC	2 cut(s)	363, 3417
VpaK11BI	GGWCC	1 cut(s)	3476
XagI	CCTNNNNNAGG	1 cut(s)	2436
XapI	RAATTY	6 cut(s)	844, 1512, 2797, 2881, 3068, 3784
XbaI	TCTAGA	2 cut(s)	1430, 1996
XceI	RCATGY	4 cut(s)	169, 758, 1497, 3343
XmiI	GTMKAC	2 cut(s)	1446, 2058
XmnI	GAANNNNTTC	6 cut(s)	1222, 1704, 1951, 3254, 3663, 3822
XspI	CTAG	7 cut(s)	630, 1002, 1431, 1997, 2010, 2585, 2696
ZrmI	AGTACT	2 cut(s)	1286, 2694
Zsp2I	ATGCAT	1 cut(s)	3000

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.