Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000599

Physical Location & Seq

Genomic Coordinates Forward (+)

38418097 .. 38419761

Gene Structure 1665 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG332900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1380 bp

ATGGACATTGAGTTGTCTGCTTTTCCTTTTCTTACTCGTCCAAATGATGATGCTCTTAATGGAGGACAGCGTTGCTTGGAGATCCTTGAAGCGCTTACTGAGGATGGAGAAGTGACACCTCTAGGGAAGGCCATGGCTTATTATCCCATAAGTCCTCGCCACTCTAAGATGCTCCTAACAGTCATCAAAATGTTGAATAAGGAGAAAAGTTATAAACGACCTAATTTAGTACTAGCATATGCAGTTGCTTCAGCTGCAGCTTTGAGTTTGTCAAATATTTTTGTTAGTCAGTTTGAAGACAGTTGCACAGAAAACCATGACTTAATTGATGGAAATTCCAGTGCTCCAGTTCACGGTGAAGTTATAGACAAGCAAGAGAGAGTGATCAAAGAGAAGAAAGTGAGAGCGTCTTGTGAAAATTTTAGTAGTCATAGCAGTGATGCCCTTTCCAGAGCTTATGTTTTGCGGCTCTATGAACTTTCCAAGAGCCGATTGCATTTCTGCAAGGACAATGCTCTACACCCAGAAACCATGCATGAAATATCCGAGCTGAGAGAGCAGCTACTCAAACTTGTCTTTTATCATAGTGGTGTGTCTGGCGGTGAATTTTCATGGATCCATGGTAGTCAGGAAGATGTTGAGCATGATTGGAGGGCTGATGTTATCCCTCTTTCTTTGGATGAGGAAGGCCTCTTGTGCCGGGCCATCTGTGCTGGTTGGGCAGATAGAGTTGCCAAGCGCATTAAAGGAAGTAAAAATCAATATCAAACCTGCTTGAGTAATGAGAATGTCTTCCTCGACCGCCAGTCATCTGTTTCTAAAATTGCTCCTGAATATTTGGTGTACAGTGAGTTGATACAGAAAAAGAAACCATACATGCACGGTGTTACTTGTATTGAACCAGAATGGCTTGTTGACTGTGGTCGGGTCTTATGCAAGCTTCCAAAGGGCAGTGCACCTTACTATGACTGTGTAAGTGACAAGGTACTATACAATGTCACTCCAACCTTTGGTCCTCATTTGTGGAAGCTTCCGGAACATTGTTTGCCTATTGATAAGACTGAGTTTAAAGGTGCAGTGCAAGCTTTTGCTTTTGCTTTGTTGGACGGCAAGGTTCTGCGTTGCCTGAGACCTGTGCGTGCATTCATGGCAGAACATCCTCGTACTGTTTTAAAGCCGGTGGCAGCAAATCGAGAACGGGTTCAGAATCTCTTGTTGAAGTTGGGGGAGAAGAAGATACACAGCCGTGCTATGTTGAGAGAAGTGTGGAGTAAAAATCCCAACGAATTGTATCTGGAAATCCGGAACTGGTTTAGAAAGAATTTCCACTATAAGTTTAAGGATATTTGGGTCGAAATGCTTCGCGAAGCCGTTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

459

Amino Acids

52.5

Weight (kDa)

8.12

Isoelectric Point (pI)

42.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_HA2	PF04408	24 - 50	5.5e-07	Helicase associated domain (HA2), winged-helix
HA2_C	PF21010	51 - 149	3.5e-06	Helicase associated domain (HA2), ratchet-like
OB_NTP_bind	PF07717	232 - 307	3.1e-18	Oligonucleotide/oligosaccharide-binding (OB)-fold
DHX37_C	PF23362	376 - 453	2.6e-16	DEAH helicase DHX37 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33390 AT1G33390
fragaria_vesca	FvH4_3g40090 FvH4_3g40090 FvH4_3g40090 FvH4_6g48600
malus_domestica	MD04G1241500.v1.1 MD05G1017800.v1.1
prunus_persica	Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1
pyrus_communis	pycom04g21310 pycom05g01000 pycom05g01050 pycom11g20470
rosa_chinensis	RchiOBHm_Chr2g0168421 RchiOBHm_Chr2g0168431 RchiOBHm_Chr2g0168441 RchiOBHm_Chr2g0168451 RchiOBHm_Chr2g0168461 RchiOBHm_Chr4g0407811 RchiOBHm_Chr7g0220161 RchiOBHm_Chr7g0220171 RchiOBHm_Chr7g0220481
rosa_laevigata	RLG00000002253 RLG00000008696 RLG00000021781
rosa_multiflora	Rmu_co8232135.1_g000001 Rmu_sc0000966.1_g000007 Rmu_sc0003573.1_g000032 Rmu_sc0006361.1_g000012 Rmu_sc0006361.1_g000013 Rmu_sc0012607.1_g000001 Rmu_sc0016657.1_g000009
rosa_roxburghii	Rroxscaffold_2G00083000 Rroxscaffold_2G00083010 Rroxscaffold_3G00239750 Rroxscaffold_5G00352370
rosa_rugosa	Rorug02G0533800 Rorug02G0533800 Rorug04G0081400 Rorug07G0189900 Rorug07G0190000
rosa_samantha	Rh2AG603500 Rh2AG603700 Rh2BG616600 Rh2BG616700 Rh2BG616800 Rh2CG584500 Rh2CG584600 Rh2CG584700 Rh2DG627100 Rh2DG627200 Rh4AG146500 Rh4BG144000 Rh4CG153000 Rh4DG140500 Rh7AG332900 Rh7BG324300 Rh7BG324400 Rh7BG324500 Rh7CG350400 Rh7DG329000
rosa_wichuraiana	Rw0G022710 Rw2G050050 Rw4G011990 Rw7G028060 Rw7G028070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	213
Acc36I	ACCTGC	1 cut(s)	779
AccB7I	CCANNNNNTGG	1 cut(s)	1010
AccII	CGCG	1 cut(s)	1365
AccIII	TCCGGA	2 cut(s)	1033, 1302
AciI	CCGC	3 cut(s)	466, 600, 802
AclWI	GGATC	3 cut(s)	76, 610, 623
AcsI	RAATTY	4 cut(s)	334, 418, 605, 1321
AcuI	CTGAAG	1 cut(s)	234
AfaI	GTAC	4 cut(s)	231, 845, 987, 1165
AfeI	AGCGCT	1 cut(s)	93
AfiI	CCNNNNNNNGG	2 cut(s)	353, 1010
AgsI	TTSAA	5 cut(s)	89, 196, 296, 899, 1219
AhdI	GACNNNNNGTC	1 cut(s)	805
AleI	CACNNNNGTG	1 cut(s)	1245
AluBI	AGCT	8 cut(s)	254, 260, 455, 550, 562, 940, 1030, 1085
AluI	AGCT	8 cut(s)	254, 260, 455, 550, 562, 940, 1030, 1085
Alw21I	GWGCWC	2 cut(s)	346, 958
Alw26I	GTCTC	1 cut(s)	1123
Alw44I	GTGCAC	1 cut(s)	954
AlwI	GGATC	3 cut(s)	76, 610, 623
Aor13HI	TCCGGA	2 cut(s)	1033, 1302
Aor51HI	AGCGCT	1 cut(s)	93
AoxI	GGCC	3 cut(s)	129, 688, 702
ApaLI	GTGCAC	1 cut(s)	954
ApeKI	GCWGC	4 cut(s)	254, 257, 559, 1184
ApoI	RAATTY	4 cut(s)	334, 418, 605, 1321
Asp700I	GAANNNNTTC	3 cut(s)	791, 1200, 1359
AspLEI	GCGC	2 cut(s)	94, 741
AspS9I	GGNCC	2 cut(s)	702, 1013
AsuC2I	CCSGG	1 cut(s)	701
AsuHPI	GGTGA	2 cut(s)	368, 614
AvaII	GGWCC	1 cut(s)	1013
BaeGI	GKGCMC	1 cut(s)	958
BamHI	GGATCC	1 cut(s)	615
BbsI	GAAGAC	2 cut(s)	303, 784
Bbv12I	GWGCWC	2 cut(s)	346, 958
BbvI	GCAGC	4 cut(s)	241, 269, 571, 1196
BccI	CCATC	3 cut(s)	98, 323, 713
BceAI	ACGGC	3 cut(s)	1123, 1230, 1355
BclI	TGATCA	1 cut(s)	384
BcnI	CCSGG	1 cut(s)	701
BcoDI	GTCTC	1 cut(s)	1123
BfaI	CTAG	2 cut(s)	122, 233
BfmI	CTRYAG	1 cut(s)	255
BfoI	RGCGCY	1 cut(s)	95
BfuAI	ACCTGC	1 cut(s)	779
BisI	GCNGC	5 cut(s)	255, 258, 467, 560, 1185
BlsI	GCNGC	5 cut(s)	256, 259, 468, 561, 1186
BmcAI	AGTACT	1 cut(s)	231
Bme1390I	CCNGG	1 cut(s)	701
Bme18I	GGWCC	1 cut(s)	1013
BmeRI	GACNNNNNGTC	1 cut(s)	805
BmgT120I	GGNCC	2 cut(s)	702, 1013
BmiI	GGNNCC	1 cut(s)	617
BmrFI	CCNGG	1 cut(s)	701
BmsI	GCATC	3 cut(s)	40, 159, 430
BoxI	GACNNNNGTC	1 cut(s)	921
BpiI	GAAGAC	2 cut(s)	303, 784
BpmI	CTGGAG	1 cut(s)	330
BpuEI	CTTGAG	1 cut(s)	796
BpuMI	CCSGG	1 cut(s)	701
BsaI	GGTCTC	1 cut(s)	1123
BsaJI	CCNNGG	2 cut(s)	132, 619
BsaWI	WCCGGW	2 cut(s)	1033, 1302
Bsc4I	CCNNNNNNNGG	2 cut(s)	353, 1010
Bse118I	RCCGGY	1 cut(s)	1177
Bse1I	ACTGG	4 cut(s)	339, 347, 805, 1313
BseAI	TCCGGA	2 cut(s)	1033, 1302
BseDI	CCNNGG	2 cut(s)	132, 619
BseGI	GGATG	3 cut(s)	109, 685, 1156
BseLI	CCNNNNNNNGG	2 cut(s)	353, 1010
BseMII	CTCAG	4 cut(s)	90, 542, 1053, 1118
BseNI	ACTGG	4 cut(s)	339, 347, 805, 1313
BseSI	GKGCMC	1 cut(s)	958
BseXI	GCAGC	4 cut(s)	241, 269, 571, 1196
BsgI	GTGCAG	1 cut(s)	1095
Bsh1236I	CGCG	1 cut(s)	1365
Bsh1285I	CGRYCG	1 cut(s)	802
BshFI	GGCC	3 cut(s)	131, 690, 704
BsiEI	CGRYCG	1 cut(s)	802
BsiHKAI	GWGCWC	2 cut(s)	346, 958
BsiSI	CCGG	4 cut(s)	700, 1034, 1178, 1303
BslI	CCNNNNNNNGG	2 cut(s)	353, 1010
BsmAI	GTCTC	1 cut(s)	1123
BsmI	GAATGC	1 cut(s)	1142
BsnI	GGCC	3 cut(s)	131, 690, 704
Bso31I	GGTCTC	1 cut(s)	1123
Bsp1286I	GDGCHC	2 cut(s)	346, 958
Bsp13I	TCCGGA	2 cut(s)	1033, 1302
Bsp1407I	TGTACA	1 cut(s)	843
Bsp143I	GATC	3 cut(s)	81, 384, 615
Bsp19I	CCATGG	2 cut(s)	132, 619
Bsp68I	TCGCGA	1 cut(s)	1365
BspACI	CCGC	3 cut(s)	466, 600, 802
BspANI	GGCC	3 cut(s)	131, 690, 704
BspCNI	CTCAG	4 cut(s)	91, 543, 1054, 1119
BspEI	TCCGGA	2 cut(s)	1033, 1302
BspFNI	CGCG	1 cut(s)	1365
BspLI	GGNNCC	1 cut(s)	617
BspMAI	CTGCAG	1 cut(s)	259
BspMI	ACCTGC	1 cut(s)	779
BspPI	GGATC	3 cut(s)	76, 610, 623
BspTNI	GGTCTC	1 cut(s)	1123
BsrFI	RCCGGY	1 cut(s)	1177
BsrGI	TGTACA	1 cut(s)	843
BsrI	ACTGG	4 cut(s)	339, 347, 805, 1313
BssAI	RCCGGY	1 cut(s)	1177
BssECI	CCNNGG	2 cut(s)	132, 619
BssMI	GATC	3 cut(s)	81, 384, 615
BssT1I	CCWWGG	2 cut(s)	132, 619
Bst4CI	ACNGT	8 cut(s)	181, 302, 356, 848, 884, 920, 971, 1168
BstAUI	TGTACA	1 cut(s)	843
BstC8I	GCNNGC	3 cut(s)	938, 1083, 1140
BstDEI	CTNAG	5 cut(s)	99, 165, 551, 1062, 1127
BstDSI	CCRYGG	2 cut(s)	132, 619
BstF5I	GGATG	3 cut(s)	109, 685, 1156
BstFNI	CGCG	1 cut(s)	1365
BstH2I	RGCGCY	1 cut(s)	95
BstHHI	GCGC	2 cut(s)	94, 741
BstKTI	GATC	3 cut(s)	84, 387, 618
BstMAI	GTCTC	1 cut(s)	1123
BstMBI	GATC	3 cut(s)	81, 384, 615
BstMCI	CGRYCG	1 cut(s)	802
BstMWI	GCNNNNNNNGC	7 cut(s)	254, 556, 696, 710, 719, 1082, 1148
BstNSI	RCATGY	1 cut(s)	880
BstPAI	GACNNNNGTC	1 cut(s)	921
BstSCI	CCNGG	1 cut(s)	699
BstSFI	CTRYAG	1 cut(s)	255
BstSLI	GKGCMC	1 cut(s)	958
BstUI	CGCG	1 cut(s)	1365
BstV1I	GCAGC	4 cut(s)	241, 269, 571, 1196
BstV2I	GAAGAC	2 cut(s)	303, 784
BstX2I	RGATCY	2 cut(s)	81, 615
BstYI	RGATCY	2 cut(s)	81, 615
BsuRI	GGCC	3 cut(s)	131, 690, 704
BtgI	CCRYGG	2 cut(s)	132, 619
BtsCI	GGATG	3 cut(s)	109, 685, 1156
BtsI	GCAGTG	3 cut(s)	442, 958, 1083
BtsIMutI	CAGTG	5 cut(s)	346, 442, 853, 958, 1083
BtuMI	TCGCGA	1 cut(s)	1365
BveI	ACCTGC	1 cut(s)	779
Cac8I	GCNNGC	3 cut(s)	938, 1083, 1140
CfoI	GCGC	2 cut(s)	94, 741
Cfr10I	RCCGGY	1 cut(s)	1177
Cfr13I	GGNCC	2 cut(s)	702, 1013
CseI	GACGC	1 cut(s)	396
Csp6I	GTAC	4 cut(s)	230, 844, 986, 1164
CviAII	CATG	9 cut(s)	133, 317, 532, 536, 612, 620, 644, 877, 1147
CviQI	GTAC	4 cut(s)	230, 844, 986, 1164
DdeI	CTNAG	5 cut(s)	99, 165, 551, 1062, 1127
DpnI	GATC	3 cut(s)	83, 386, 617
DpnII	GATC	3 cut(s)	81, 384, 615
DraI	TTTAAA	2 cut(s)	1069, 1173
DriI	GACNNNNNGTC	1 cut(s)	805
Eam1105I	GACNNNNNGTC	1 cut(s)	805
Eco130I	CCWWGG	2 cut(s)	132, 619
Eco147I	AGGCCT	1 cut(s)	690
Eco31I	GGTCTC	1 cut(s)	1123
Eco47I	GGWCC	1 cut(s)	1013
Eco47III	AGCGCT	1 cut(s)	93
Eco57I	CTGAAG	1 cut(s)	234
EcoT14I	CCWWGG	2 cut(s)	132, 619
EcoT22I	ATGCAT	1 cut(s)	537
ErhI	CCWWGG	2 cut(s)	132, 619
FaeI	CATG	9 cut(s)	136, 320, 535, 539, 615, 623, 647, 880, 1150
FatI	CATG	9 cut(s)	132, 316, 531, 535, 611, 619, 643, 876, 1146
FauNDI	CATATG	1 cut(s)	238
FbaI	TGATCA	1 cut(s)	384
Fnu4HI	GCNGC	5 cut(s)	255, 258, 467, 560, 1185
FokI	GGATG	3 cut(s)	116, 692, 1143
Fsp4HI	GCNGC	5 cut(s)	255, 258, 467, 560, 1185
FspBI	CTAG	2 cut(s)	122, 233
GlaI	GCGC	2 cut(s)	93, 740
GluI	GCNGC	5 cut(s)	255, 258, 467, 560, 1185
GsuI	CTGGAG	1 cut(s)	330
HaeII	RGCGCY	1 cut(s)	95
HaeIII	GGCC	3 cut(s)	131, 690, 704
HapII	CCGG	4 cut(s)	700, 1034, 1178, 1303
HgaI	GACGC	1 cut(s)	396
HhaI	GCGC	2 cut(s)	94, 741
Hin1II	CATG	9 cut(s)	136, 320, 535, 539, 615, 623, 647, 880, 1150
Hin6I	GCGC	2 cut(s)	92, 739
HinP1I	GCGC	2 cut(s)	92, 739
HincII	GTYRAC	1 cut(s)	916
HindII	GTYRAC	1 cut(s)	916
HindIII	AAGCTT	3 cut(s)	938, 1028, 1083
HinfI	GANTC	1 cut(s)	1207
HpaII	CCGG	4 cut(s)	700, 1034, 1178, 1303
HphI	GGTGA	2 cut(s)	368, 614
Hpy166II	GTNNAC	5 cut(s)	352, 844, 916, 956, 1375
Hpy188I	TCNGA	2 cut(s)	547, 1206
Hpy188III	TCNNGA	8 cut(s)	450, 629, 830, 1034, 1193, 1295, 1303, 1364
Hpy8I	GTNNAC	5 cut(s)	352, 844, 916, 956, 1375
HpyAV	CCTTC	2 cut(s)	121, 680
HpyCH4III	ACNGT	8 cut(s)	181, 302, 356, 848, 884, 920, 971, 1168
HpyF10VI	GCNNNNNNNGC	7 cut(s)	254, 556, 696, 710, 719, 1082, 1148
HpyF3I	CTNAG	5 cut(s)	99, 165, 551, 1062, 1127
Hsp92II	CATG	9 cut(s)	136, 320, 535, 539, 615, 623, 647, 880, 1150
HspAI	GCGC	2 cut(s)	92, 739
Kpn2I	TCCGGA	2 cut(s)	1033, 1302
Ksp22I	TGATCA	1 cut(s)	384
Kzo9I	GATC	3 cut(s)	81, 384, 615
LmnI	GCTCC	3 cut(s)	177, 349, 832
Lsp1109I	GCAGC	4 cut(s)	241, 269, 571, 1196
LweI	GCATC	3 cut(s)	40, 159, 430
MaeI	CTAG	2 cut(s)	122, 233
MaeIII	GTNAC	4 cut(s)	112, 886, 977, 997
MalI	GATC	3 cut(s)	83, 386, 617
MboI	GATC	3 cut(s)	81, 384, 615
MboII	GAAGA	6 cut(s)	308, 406, 644, 784, 1243, 1246
MflI	RGATCY	2 cut(s)	81, 615
MhlI	GDGCHC	2 cut(s)	346, 958
MluCI	AATT	8 cut(s)	223, 324, 334, 418, 605, 822, 1286, 1321
MmeI	TCCRAC	2 cut(s)	1028, 1083
Mph1103I	ATGCAT	1 cut(s)	537
MroI	TCCGGA	2 cut(s)	1033, 1302
MroXI	GAANNNNTTC	3 cut(s)	791, 1200, 1359
MseI	TTAA	6 cut(s)	57, 323, 744, 1068, 1172, 1338
MslI	CAYNNNNRTG	4 cut(s)	188, 435, 588, 1245
MspA1I	CMGCKG	1 cut(s)	254
MspI	CCGG	4 cut(s)	700, 1034, 1178, 1303
MspR9I	CCNGG	1 cut(s)	701
Mva1269I	GAATGC	1 cut(s)	1142
MvnI	CGCG	1 cut(s)	1365
MwoI	GCNNNNNNNGC	7 cut(s)	254, 556, 696, 710, 719, 1082, 1148
NciI	CCSGG	1 cut(s)	701
NcoI	CCATGG	2 cut(s)	132, 619
NdeI	CATATG	1 cut(s)	238
NdeII	GATC	3 cut(s)	81, 384, 615
NlaIII	CATG	9 cut(s)	136, 320, 535, 539, 615, 623, 647, 880, 1150
NlaIV	GGNNCC	1 cut(s)	617
NmuCI	GTSAC	3 cut(s)	112, 977, 997
NruI	TCGCGA	1 cut(s)	1365
NsiI	ATGCAT	1 cut(s)	537
NspI	RCATGY	1 cut(s)	880
OliI	CACNNNNGTG	1 cut(s)	1245
PceI	AGGCCT	1 cut(s)	690
PctI	GAATGC	1 cut(s)	1142
PdmI	GAANNNNTTC	3 cut(s)	791, 1200, 1359
PfeI	GAWTC	1 cut(s)	1207
PflMI	CCANNNNNTGG	1 cut(s)	1010
PkrI	GCNGC	5 cut(s)	256, 259, 468, 561, 1186
PshAI	GACNNNNGTC	1 cut(s)	921
PsiI	TTATAA	1 cut(s)	213
PspN4I	GGNNCC	1 cut(s)	617
PspPI	GGNCC	2 cut(s)	702, 1013
PstI	CTGCAG	1 cut(s)	259
PsuI	RGATCY	2 cut(s)	81, 615
PvuII	CAGCTG	1 cut(s)	254
RruI	TCGCGA	1 cut(s)	1365
RsaI	GTAC	4 cut(s)	231, 845, 987, 1165
RsaNI	GTAC	4 cut(s)	230, 844, 986, 1164
RseI	CAYNNNNRTG	4 cut(s)	188, 435, 588, 1245
SaqAI	TTAA	6 cut(s)	57, 323, 744, 1068, 1172, 1338
SatI	GCNGC	5 cut(s)	255, 258, 467, 560, 1185
Sau3AI	GATC	3 cut(s)	81, 384, 615
Sau96I	GGNCC	2 cut(s)	702, 1013
ScaI	AGTACT	1 cut(s)	231
ScrFI	CCNGG	1 cut(s)	701
SduI	GDGCHC	2 cut(s)	346, 958
SfaNI	GCATC	3 cut(s)	40, 159, 430
SfcI	CTRYAG	1 cut(s)	255
SinI	GGWCC	1 cut(s)	1013
SmiMI	CAYNNNNRTG	4 cut(s)	188, 435, 588, 1245
SmlI	CTYRAG	1 cut(s)	775
SmoI	CTYRAG	1 cut(s)	775
Sse9I	AATT	8 cut(s)	223, 324, 334, 418, 605, 822, 1286, 1321
SseBI	AGGCCT	1 cut(s)	690
SsiI	CCGC	3 cut(s)	466, 600, 802
SspI	AATATT	2 cut(s)	277, 836
SspMI	CTAG	2 cut(s)	122, 233
StuI	AGGCCT	1 cut(s)	690
StyD4I	CCNGG	1 cut(s)	699
StyI	CCWWGG	2 cut(s)	132, 619
TaaI	ACNGT	8 cut(s)	181, 302, 356, 848, 884, 920, 971, 1168
TaqI	TCGA	3 cut(s)	798, 1192, 1353
TasI	AATT	8 cut(s)	223, 324, 334, 418, 605, 822, 1286, 1321
TatI	WGTACW	2 cut(s)	229, 843
TauI	GCSGC	1 cut(s)	469
TfiI	GAWTC	1 cut(s)	1207
Tru1I	TTAA	6 cut(s)	57, 323, 744, 1068, 1172, 1338
Tru9I	TTAA	6 cut(s)	57, 323, 744, 1068, 1172, 1338
TscAI	CASTG	5 cut(s)	346, 442, 853, 958, 1083
TseFI	GTSAC	3 cut(s)	112, 977, 997
TseI	GCWGC	4 cut(s)	254, 257, 559, 1184
Tsp45I	GTSAC	3 cut(s)	112, 977, 997
TspDTI	ATGAA	4 cut(s)	489, 552, 600, 1135
TspRI	CASTG	5 cut(s)	346, 442, 853, 958, 1083
Van91I	CCANNNNNTGG	1 cut(s)	1010
VneI	GTGCAC	1 cut(s)	954
VpaK11BI	GGWCC	1 cut(s)	1013
XapI	RAATTY	4 cut(s)	334, 418, 605, 1321
XceI	RCATGY	1 cut(s)	880
XmnI	GAANNNNTTC	3 cut(s)	791, 1200, 1359
XspI	CTAG	2 cut(s)	122, 233
ZrmI	AGTACT	1 cut(s)	231
Zsp2I	ATGCAT	1 cut(s)	537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.