Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000599

Physical Location & Seq

Genomic Coordinates Reverse (-)

76200269 .. 76201300

Gene Structure 1032 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG584500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGATCAGCAAGAGATACTGATTAGCAGGAAGAAACTGAAAGTGTCTTCTGAAAATTTTCATAGTAGCAGCAGTGATGCTCTGTCAAGAGCTTATGCTTTGCGAGGCTATGAACTTTCCAAGAGCCAAATGGGTTTCTGCAAGGAAAATGCTCTACACCCGGAAACCATGGAGGAAATATCCAAGCTGAGAAAGCAGCTCCTCAAACTTGTCTTTAATCCAAATGGTGTTTCTGGAGGTGTGAAGGAATTTTTGTGGATCTATGGTAGTCAGAAAGATGTTGAAACTGTTTGGAGGGATGATGAGAAGCTTCTCTCAGTCAATGAGGAACAGCACTTACACCAAGCTATCTGTGCTGGTTGGATAGATAGGGTTGCTAAACGCATTGAAGGAAGTGCATATCAGGCCTGCATGGTCAAAGAGACTGTGTTCCTCCACTGGCGGTCACCTGTTTCTAAAATTGCTCCTGAGTTTTTGGTGTACAGTGAGTTGATCCAGACAAAGAAACCTTTCATGTACGGCATTACTTGTGTCAGTCCAGATTGGCTCGTCAAGTATGGTCTGCTTGCTATGTATGATCAGCGCTTGTGCACTTTTTCAAAAGAAACTCCGCCTTACTATGACCGTCAAACTGACAAACTATTATACAGTGTCACTCCAACCTTTGGTCGTGTTCAACGGTGGGAGCTTCCACAACATTCTTTGCCAATTAGTAATTTTGATCATTCAGGCGCAGTTCAAGCTTTTGCTTTGCTCGATGGCAAGGTTTTGCATTGCCTTAGACCTCTGCGTGAGTCCATGGCAGAACGTCCTCACACTGTTTTAAGGCCAGAGACAGCAGGTCGAGAACGGGTTCATAATCTCTTGGCGAAGCTGGGGAAGAAAAAGATAGTCAGCCATGCTATGTTGATAGAGGTGTGGAAGGAAAATCCCACTGAATTGTATCCGGAAATCCGGAGCTGGTTTAAGGAGAGTTTCCACCAGAAGTTTAGGGAAATTTGGGTCAAGATGCTTTATGAAGCCCTTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

343

Amino Acids

39.9

Weight (kDa)

8.93

Isoelectric Point (pI)

47.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OB_NTP_bind	PF07717	113 - 186	6.5e-18	Oligonucleotide/oligosaccharide-binding (OB)-fold
DHX37_C	PF23362	260 - 337	1.9e-15	DEAH helicase DHX37 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33390 AT1G33390
fragaria_vesca	FvH4_3g40090 FvH4_3g40090 FvH4_3g40090 FvH4_6g48600
malus_domestica	MD04G1241500.v1.1 MD05G1017800.v1.1
prunus_persica	Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1
pyrus_communis	pycom04g21310 pycom05g01000 pycom05g01050 pycom11g20470
rosa_chinensis	RchiOBHm_Chr2g0168421 RchiOBHm_Chr2g0168431 RchiOBHm_Chr2g0168441 RchiOBHm_Chr2g0168451 RchiOBHm_Chr2g0168461 RchiOBHm_Chr4g0407811 RchiOBHm_Chr7g0220161 RchiOBHm_Chr7g0220171 RchiOBHm_Chr7g0220481
rosa_laevigata	RLG00000002253 RLG00000008696 RLG00000021781
rosa_multiflora	Rmu_co8232135.1_g000001 Rmu_sc0000966.1_g000007 Rmu_sc0003573.1_g000032 Rmu_sc0006361.1_g000012 Rmu_sc0006361.1_g000013 Rmu_sc0012607.1_g000001 Rmu_sc0016657.1_g000009
rosa_roxburghii	Rroxscaffold_2G00083000 Rroxscaffold_2G00083010 Rroxscaffold_3G00239750 Rroxscaffold_5G00352370
rosa_rugosa	Rorug02G0533800 Rorug02G0533800 Rorug04G0081400 Rorug07G0189900 Rorug07G0190000
rosa_samantha	Rh2AG603500 Rh2AG603700 Rh2BG616600 Rh2BG616700 Rh2BG616800 Rh2CG584500 Rh2CG584600 Rh2CG584700 Rh2DG627100 Rh2DG627200 Rh4AG146500 Rh4BG144000 Rh4CG153000 Rh4DG140500 Rh7AG332900 Rh7BG324300 Rh7BG324400 Rh7BG324500 Rh7CG350400 Rh7DG329000
rosa_wichuraiana	Rw0G022710 Rw2G050050 Rw4G011990 Rw7G028060 Rw7G028070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	830
AccB7I	CCANNNNNTGG	1 cut(s)	665
AccIII	TCCGGA	2 cut(s)	946, 954
AciI	CCGC	2 cut(s)	442, 611
AclWI	GGATC	3 cut(s)	12, 266, 487
AcsI	RAATTY	3 cut(s)	55, 248, 996
AfaI	GTAC	2 cut(s)	482, 518
AfeI	AGCGCT	1 cut(s)	584
AfiI	CCNNNNNNNGG	1 cut(s)	665
AgsI	TTSAA	5 cut(s)	284, 389, 600, 677, 740
AhdI	GACNNNNNGTC	1 cut(s)	840
AjuI	GAANNNNNNNTTGG	2 cut(s)	214, 246
AluBI	AGCT	9 cut(s)	92, 187, 199, 310, 347, 688, 743, 874, 960
AluI	AGCT	9 cut(s)	92, 187, 199, 310, 347, 688, 743, 874, 960
Alw21I	GWGCWC	1 cut(s)	593
Alw26I	GTCTC	2 cut(s)	416, 827
Alw44I	GTGCAC	1 cut(s)	589
AlwI	GGATC	3 cut(s)	12, 266, 487
Aor13HI	TCCGGA	2 cut(s)	946, 954
Aor51HI	AGCGCT	1 cut(s)	584
AoxI	GGCC	2 cut(s)	405, 827
ApaLI	GTGCAC	1 cut(s)	589
ApeKI	GCWGC	2 cut(s)	69, 196
ApoI	RAATTY	3 cut(s)	55, 248, 996
Asp700I	GAANNNNTTC	3 cut(s)	57, 509, 852
AspLEI	GCGC	2 cut(s)	585, 734
AsuC2I	CCSGG	1 cut(s)	161
AsuHPI	GGTGA	1 cut(s)	438
BaeGI	GKGCMC	1 cut(s)	593
BbsI	GAAGAC	1 cut(s)	39
Bbv12I	GWGCWC	1 cut(s)	593
BbvI	GCAGC	2 cut(s)	81, 208
BccI	CCATC	1 cut(s)	752
BceAI	ACGGC	1 cut(s)	535
BciVI	GTATCC	1 cut(s)	954
BclI	TGATCA	2 cut(s)	577, 721
BcnI	CCSGG	1 cut(s)	161
BcoDI	GTCTC	2 cut(s)	416, 827
BfoI	RGCGCY	1 cut(s)	586
BfuAI	ACCTGC	1 cut(s)	830
BfuI	GTATCC	1 cut(s)	954
BisI	GCNGC	2 cut(s)	70, 197
BlsI	GCNGC	2 cut(s)	71, 198
Bme1390I	CCNGG	1 cut(s)	161
BmeRI	GACNNNNNGTC	1 cut(s)	840
BmrFI	CCNGG	1 cut(s)	161
BmsI	GCATC	2 cut(s)	67, 999
BpiI	GAAGAC	1 cut(s)	39
BpmI	CTGGAG	1 cut(s)	255
BpuMI	CCSGG	1 cut(s)	161
BsaJI	CCNNGG	2 cut(s)	168, 798
BsaWI	WCCGGW	2 cut(s)	946, 954
Bsc4I	CCNNNNNNNGG	1 cut(s)	665
Bse1I	ACTGG	1 cut(s)	443
Bse3DI	GCAATG	1 cut(s)	772
BseAI	TCCGGA	2 cut(s)	946, 954
BseDI	CCNNGG	2 cut(s)	168, 798
BseGI	GGATG	1 cut(s)	304
BseLI	CCNNNNNNNGG	1 cut(s)	665
BseMI	GCAATG	1 cut(s)	772
BseMII	CTCAG	3 cut(s)	179, 330, 459
BseNI	ACTGG	1 cut(s)	443
BseRI	GAGGAG	1 cut(s)	191
BseSI	GKGCMC	1 cut(s)	593
BseXI	GCAGC	2 cut(s)	81, 208
BseYI	CCCAGC	1 cut(s)	874
BshFI	GGCC	2 cut(s)	407, 829
BsiHKAI	GWGCWC	1 cut(s)	593
BsiSI	CCGG	3 cut(s)	161, 947, 955
BslI	CCNNNNNNNGG	1 cut(s)	665
BsmAI	GTCTC	2 cut(s)	416, 827
BsnI	GGCC	2 cut(s)	407, 829
Bsp1286I	GDGCHC	1 cut(s)	593
Bsp13I	TCCGGA	2 cut(s)	946, 954
Bsp1407I	TGTACA	1 cut(s)	480
Bsp143I	GATC	5 cut(s)	4, 258, 492, 577, 721
Bsp19I	CCATGG	2 cut(s)	168, 798
BspACI	CCGC	2 cut(s)	442, 611
BspANI	GGCC	2 cut(s)	407, 829
BspCNI	CTCAG	3 cut(s)	180, 329, 460
BspEI	TCCGGA	2 cut(s)	946, 954
BspMI	ACCTGC	1 cut(s)	830
BspPI	GGATC	3 cut(s)	12, 266, 487
BsrDI	GCAATG	1 cut(s)	772
BsrGI	TGTACA	1 cut(s)	480
BsrI	ACTGG	1 cut(s)	443
BssECI	CCNNGG	2 cut(s)	168, 798
BssMI	GATC	5 cut(s)	4, 258, 492, 577, 721
BssT1I	CCWWGG	2 cut(s)	168, 798
Bst4CI	ACNGT	7 cut(s)	289, 427, 485, 626, 650, 681, 820
BstAUI	TGTACA	1 cut(s)	480
BstC8I	GCNNGC	2 cut(s)	409, 567
BstDEI	CTNAG	4 cut(s)	188, 316, 468, 779
BstDSI	CCRYGG	2 cut(s)	168, 798
BstEII	GGTNACC	1 cut(s)	444
BstF5I	GGATG	1 cut(s)	304
BstH2I	RGCGCY	1 cut(s)	586
BstHHI	GCGC	2 cut(s)	585, 734
BstKTI	GATC	5 cut(s)	7, 261, 495, 580, 724
BstMAI	GTCTC	2 cut(s)	416, 827
BstMBI	GATC	5 cut(s)	4, 258, 492, 577, 721
BstMWI	GCNNNNNNNGC	4 cut(s)	193, 353, 404, 740
BstPI	GGTNACC	1 cut(s)	444
BstSCI	CCNGG	1 cut(s)	159
BstSLI	GKGCMC	1 cut(s)	593
BstV1I	GCAGC	2 cut(s)	81, 208
BstV2I	GAAGAC	1 cut(s)	39
BstX2I	RGATCY	1 cut(s)	258
BstYI	RGATCY	1 cut(s)	258
BsuI	GTATCC	1 cut(s)	954
BsuRI	GGCC	2 cut(s)	407, 829
BtgI	CCRYGG	2 cut(s)	168, 798
BtsCI	GGATG	1 cut(s)	304
BtsI	GCAGTG	1 cut(s)	79
BtsIMutI	CAGTG	6 cut(s)	79, 436, 490, 655, 816, 933
BveI	ACCTGC	1 cut(s)	830
Cac8I	GCNNGC	2 cut(s)	409, 567
CfoI	GCGC	2 cut(s)	585, 734
Csp6I	GTAC	2 cut(s)	481, 517
CviAII	CATG	5 cut(s)	169, 412, 514, 799, 899
CviQI	GTAC	2 cut(s)	481, 517
DdeI	CTNAG	4 cut(s)	188, 316, 468, 779
DpnI	GATC	5 cut(s)	6, 260, 494, 579, 723
DpnII	GATC	5 cut(s)	4, 258, 492, 577, 721
DriI	GACNNNNNGTC	1 cut(s)	840
Eam1105I	GACNNNNNGTC	1 cut(s)	840
EciI	GGCGGA	1 cut(s)	600
Eco130I	CCWWGG	2 cut(s)	168, 798
Eco147I	AGGCCT	1 cut(s)	407
Eco47III	AGCGCT	1 cut(s)	584
Eco91I	GGTNACC	1 cut(s)	444
EcoO65I	GGTNACC	1 cut(s)	444
EcoT14I	CCWWGG	2 cut(s)	168, 798
ErhI	CCWWGG	2 cut(s)	168, 798
FaeI	CATG	5 cut(s)	172, 415, 517, 802, 902
FatI	CATG	5 cut(s)	168, 411, 513, 798, 898
FbaI	TGATCA	2 cut(s)	577, 721
Fnu4HI	GCNGC	2 cut(s)	70, 197
FokI	GGATG	1 cut(s)	311
Fsp4HI	GCNGC	2 cut(s)	70, 197
GlaI	GCGC	2 cut(s)	584, 733
GluI	GCNGC	2 cut(s)	70, 197
GsaI	CCCAGC	1 cut(s)	878
GsuI	CTGGAG	1 cut(s)	255
HaeII	RGCGCY	1 cut(s)	586
HaeIII	GGCC	2 cut(s)	407, 829
HapII	CCGG	3 cut(s)	161, 947, 955
HhaI	GCGC	2 cut(s)	585, 734
Hin1II	CATG	5 cut(s)	172, 415, 517, 802, 902
Hin6I	GCGC	2 cut(s)	583, 732
HinP1I	GCGC	2 cut(s)	583, 732
HindIII	AAGCTT	2 cut(s)	308, 741
HinfI	GANTC	1 cut(s)	794
HpaII	CCGG	3 cut(s)	161, 947, 955
HphI	GGTGA	1 cut(s)	438
Hpy166II	GTNNAC	2 cut(s)	481, 591
Hpy188I	TCNGA	2 cut(s)	52, 273
Hpy188III	TCNNGA	9 cut(s)	87, 234, 467, 496, 539, 845, 947, 955, 1006
Hpy8I	GTNNAC	2 cut(s)	481, 591
HpyAV	CCTTC	3 cut(s)	238, 383, 916
HpyCH4III	ACNGT	7 cut(s)	289, 427, 485, 626, 650, 681, 820
HpyCH4IV	ACGT	1 cut(s)	808
HpyCH4V	TGCA	5 cut(s)	141, 398, 411, 591, 772
HpyF10VI	GCNNNNNNNGC	4 cut(s)	193, 353, 404, 740
HpyF3I	CTNAG	4 cut(s)	188, 316, 468, 779
HpySE526I	ACGT	1 cut(s)	808
Hsp92II	CATG	5 cut(s)	172, 415, 517, 802, 902
HspAI	GCGC	2 cut(s)	583, 732
Kpn2I	TCCGGA	2 cut(s)	946, 954
Ksp22I	TGATCA	2 cut(s)	577, 721
Kzo9I	GATC	5 cut(s)	4, 258, 492, 577, 721
LmnI	GCTCC	4 cut(s)	204, 469, 685, 957
Lsp1109I	GCAGC	2 cut(s)	81, 208
LweI	GCATC	2 cut(s)	67, 999
MaeII	ACGT	1 cut(s)	808
MaeIII	GTNAC	2 cut(s)	444, 652
MalI	GATC	5 cut(s)	6, 260, 494, 579, 723
MboI	GATC	5 cut(s)	4, 258, 492, 577, 721
MboII	GAAGA	3 cut(s)	39, 43, 892
MflI	RGATCY	1 cut(s)	258
MhlI	GDGCHC	1 cut(s)	593
MluCI	AATT	7 cut(s)	55, 248, 459, 708, 715, 938, 996
MlyI	GAGTC	1 cut(s)	803
MmeI	TCCRAC	2 cut(s)	341, 683
MroI	TCCGGA	2 cut(s)	946, 954
MroXI	GAANNNNTTC	3 cut(s)	57, 509, 852
MseI	TTAA	3 cut(s)	216, 824, 966
MspI	CCGG	3 cut(s)	161, 947, 955
MspR9I	CCNGG	1 cut(s)	161
MwoI	GCNNNNNNNGC	4 cut(s)	193, 353, 404, 740
NciI	CCSGG	1 cut(s)	161
NcoI	CCATGG	2 cut(s)	168, 798
NdeII	GATC	5 cut(s)	4, 258, 492, 577, 721
NlaIII	CATG	5 cut(s)	172, 415, 517, 802, 902
NmuCI	GTSAC	2 cut(s)	444, 652
PceI	AGGCCT	1 cut(s)	407
PdmI	GAANNNNTTC	3 cut(s)	57, 509, 852
PflMI	CCANNNNNTGG	1 cut(s)	665
PkrI	GCNGC	2 cut(s)	71, 198
PleI	GAGTC	1 cut(s)	802
PpsI	GAGTC	1 cut(s)	802
PspEI	GGTNACC	1 cut(s)	444
PspFI	CCCAGC	1 cut(s)	874
PsrI	GAACNNNNNNTAC	2 cut(s)	321, 353
PsuI	RGATCY	1 cut(s)	258
RsaI	GTAC	2 cut(s)	482, 518
RsaNI	GTAC	2 cut(s)	481, 517
SaqAI	TTAA	3 cut(s)	216, 824, 966
SatI	GCNGC	2 cut(s)	70, 197
Sau3AI	GATC	5 cut(s)	4, 258, 492, 577, 721
SchI	GAGTC	1 cut(s)	803
ScrFI	CCNGG	1 cut(s)	161
SduI	GDGCHC	1 cut(s)	593
SfaNI	GCATC	2 cut(s)	67, 999
Sse9I	AATT	7 cut(s)	55, 248, 459, 708, 715, 938, 996
SseBI	AGGCCT	1 cut(s)	407
SsiI	CCGC	2 cut(s)	442, 611
StuI	AGGCCT	1 cut(s)	407
StyD4I	CCNGG	1 cut(s)	159
StyI	CCWWGG	2 cut(s)	168, 798
TaaI	ACNGT	7 cut(s)	289, 427, 485, 626, 650, 681, 820
TaiI	ACGT	1 cut(s)	811
TaqI	TCGA	2 cut(s)	756, 844
TasI	AATT	7 cut(s)	55, 248, 459, 708, 715, 938, 996
TatI	WGTACW	1 cut(s)	480
Tru1I	TTAA	3 cut(s)	216, 824, 966
Tru9I	TTAA	3 cut(s)	216, 824, 966
TscAI	CASTG	6 cut(s)	79, 443, 490, 655, 823, 940
TseFI	GTSAC	2 cut(s)	444, 652
TseI	GCWGC	2 cut(s)	69, 196
Tsp45I	GTSAC	2 cut(s)	444, 652
TspDTI	ATGAA	5 cut(s)	50, 126, 502, 845, 1032
TspRI	CASTG	6 cut(s)	79, 443, 490, 655, 823, 940
Van91I	CCANNNNNTGG	1 cut(s)	665
VneI	GTGCAC	1 cut(s)	589
XapI	RAATTY	3 cut(s)	55, 248, 996
XcmI	CCANNNNNNNNNTGG	1 cut(s)	127
XmnI	GAANNNNTTC	3 cut(s)	57, 509, 852

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.