Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8232135.1

Orthogroup ID

OG0000599

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 746

Gene Structure 746 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8232135.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

gtatccaaatttcagtttcctactcctccaaatggtgatactattgatgaagcagaggatcgtttgaagctcctcaaagcacttgatagcaatggagaggtgacacctttagggaaggccatggcttattaccccataaatcctcgccaatctaagatgctccttacggtcattgaaatcctgaatatgaagcaaagttattcccgagctaatttagtgctagcatatgcagttgcagcagctgcagctttgagtgtgtctaatccttttgacagtccatttgaagatagtcacataaaaaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

101

Amino Acids

11.07

Weight (kDa)

5.73

Isoelectric Point (pI)

56.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33390 AT1G33390
fragaria_vesca	FvH4_3g40090 FvH4_3g40090 FvH4_3g40090 FvH4_6g48600
malus_domestica	MD04G1241500.v1.1 MD05G1017800.v1.1
prunus_persica	Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1
pyrus_communis	pycom04g21310 pycom05g01000 pycom05g01050 pycom11g20470
rosa_chinensis	RchiOBHm_Chr2g0168421 RchiOBHm_Chr2g0168431 RchiOBHm_Chr2g0168441 RchiOBHm_Chr2g0168451 RchiOBHm_Chr2g0168461 RchiOBHm_Chr4g0407811 RchiOBHm_Chr7g0220161 RchiOBHm_Chr7g0220171 RchiOBHm_Chr7g0220481
rosa_laevigata	RLG00000002253 RLG00000008696 RLG00000021781
rosa_multiflora	Rmu_co8232135.1_g000001 Rmu_sc0000966.1_g000007 Rmu_sc0003573.1_g000032 Rmu_sc0006361.1_g000012 Rmu_sc0006361.1_g000013 Rmu_sc0012607.1_g000001 Rmu_sc0016657.1_g000009
rosa_roxburghii	Rroxscaffold_2G00083000 Rroxscaffold_2G00083010 Rroxscaffold_3G00239750 Rroxscaffold_5G00352370
rosa_rugosa	Rorug02G0533800 Rorug02G0533800 Rorug04G0081400 Rorug07G0189900 Rorug07G0190000
rosa_samantha	Rh2AG603500 Rh2AG603700 Rh2BG616600 Rh2BG616700 Rh2BG616800 Rh2CG584500 Rh2CG584600 Rh2CG584700 Rh2DG627100 Rh2DG627200 Rh4AG146500 Rh4BG144000 Rh4CG153000 Rh4DG140500 Rh7AG332900 Rh7BG324300 Rh7BG324400 Rh7BG324500 Rh7CG350400 Rh7DG329000
rosa_wichuraiana	Rw0G022710 Rw2G050050 Rw4G011990 Rw7G028060 Rw7G028070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	66
AcsI	RAATTY	1 cut(s)	8
AfiI	CCNNNNNNNGG	1 cut(s)	32
AgsI	TTSAA	3 cut(s)	67, 176, 284
AluBI	AGCT	4 cut(s)	70, 209, 242, 248
AluI	AGCT	4 cut(s)	70, 209, 242, 248
AlwI	GGATC	1 cut(s)	66
AlwNI	CAGNNNCTG	1 cut(s)	242
Ama87I	CYCGRG	1 cut(s)	204
AoxI	GGCC	1 cut(s)	117
ApeKI	GCWGC	4 cut(s)	236, 239, 242, 245
ApoI	RAATTY	1 cut(s)	8
ArsI	GACNNNNNNTTYG	2 cut(s)	263, 295
AsuHPI	GGTGA	2 cut(s)	47, 112
AsuNHI	GCTAGC	1 cut(s)	220
AvaI	CYCGRG	1 cut(s)	204
BbvI	GCAGC	4 cut(s)	229, 248, 251, 257
BciVI	GTATCC	1 cut(s)	13
BfaI	CTAG	1 cut(s)	221
BfmI	CTRYAG	1 cut(s)	243
BfuI	GTATCC	1 cut(s)	13
BisI	GCNGC	4 cut(s)	237, 240, 243, 246
BlsI	GCNGC	4 cut(s)	238, 241, 244, 247
BmeT110I	CYCGRG	1 cut(s)	204
BmsI	GCATC	1 cut(s)	147
BmtI	GCTAGC	1 cut(s)	224
BsaJI	CCNNGG	1 cut(s)	120
Bsc4I	CCNNNNNNNGG	1 cut(s)	32
Bse3DI	GCAATG	1 cut(s)	97
BseDI	CCNNGG	1 cut(s)	120
BseLI	CCNNNNNNNGG	1 cut(s)	32
BseMI	GCAATG	1 cut(s)	97
BseRI	GAGGAG	2 cut(s)	15, 62
BseXI	GCAGC	4 cut(s)	229, 248, 251, 257
BshFI	GGCC	1 cut(s)	119
BsiHKCI	CYCGRG	1 cut(s)	204
BslI	CCNNNNNNNGG	1 cut(s)	32
BsnI	GGCC	1 cut(s)	119
BsoBI	CYCGRG	1 cut(s)	204
Bsp143I	GATC	1 cut(s)	58
Bsp19I	CCATGG	1 cut(s)	120
BspANI	GGCC	1 cut(s)	119
BspMAI	CTGCAG	1 cut(s)	247
BspOI	GCTAGC	1 cut(s)	224
BspPI	GGATC	1 cut(s)	66
BsrDI	GCAATG	1 cut(s)	97
BssECI	CCNNGG	1 cut(s)	120
BssMI	GATC	1 cut(s)	58
BssT1I	CCWWGG	1 cut(s)	120
Bst4CI	ACNGT	2 cut(s)	169, 275
BstAPI	GCANNNNNTGC	1 cut(s)	242
BstC8I	GCNNGC	1 cut(s)	222
BstDEI	CTNAG	1 cut(s)	153
BstDSI	CCRYGG	1 cut(s)	120
BstKTI	GATC	1 cut(s)	61
BstMBI	GATC	1 cut(s)	58
BstMWI	GCNNNNNNNGC	3 cut(s)	236, 242, 245
BstSFI	CTRYAG	1 cut(s)	243
BstV1I	GCAGC	4 cut(s)	229, 248, 251, 257
BsuI	GTATCC	1 cut(s)	13
BsuRI	GGCC	1 cut(s)	119
BtgI	CCRYGG	1 cut(s)	120
Cac8I	GCNNGC	1 cut(s)	222
CaiI	CAGNNNCTG	1 cut(s)	242
CviAII	CATG	1 cut(s)	121
CviJI	RGCY	6 cut(s)	70, 119, 125, 209, 242, 248
CviKI_1	RGCY	6 cut(s)	70, 119, 125, 209, 242, 248
DdeI	CTNAG	1 cut(s)	153
DpnI	GATC	1 cut(s)	60
DpnII	GATC	1 cut(s)	58
Eco130I	CCWWGG	1 cut(s)	120
Eco88I	CYCGRG	1 cut(s)	204
EcoT14I	CCWWGG	1 cut(s)	120
ErhI	CCWWGG	1 cut(s)	120
FaeI	CATG	1 cut(s)	124
FaiI	YATR	6 cut(s)	122, 137, 188, 226, 228, 296
FatI	CATG	1 cut(s)	120
FauNDI	CATATG	1 cut(s)	226
Fnu4HI	GCNGC	4 cut(s)	237, 240, 243, 246
Fsp4HI	GCNGC	4 cut(s)	237, 240, 243, 246
FspBI	CTAG	1 cut(s)	221
GluI	GCNGC	4 cut(s)	237, 240, 243, 246
HaeIII	GGCC	1 cut(s)	119
Hin1II	CATG	1 cut(s)	124
HphI	GGTGA	2 cut(s)	47, 112
Hpy188III	TCNNGA	2 cut(s)	181, 204
HpyAV	CCTTC	1 cut(s)	109
HpyCH4III	ACNGT	2 cut(s)	169, 275
HpyCH4V	TGCA	3 cut(s)	230, 236, 245
HpyF10VI	GCNNNNNNNGC	3 cut(s)	236, 242, 245
HpyF3I	CTNAG	1 cut(s)	153
Hsp92II	CATG	1 cut(s)	124
Kzo9I	GATC	1 cut(s)	58
LmnI	GCTCC	2 cut(s)	75, 165
LpnPI	CCDG	1 cut(s)	194
Lsp1109I	GCAGC	4 cut(s)	229, 248, 251, 257
LweI	GCATC	1 cut(s)	147
MaeI	CTAG	1 cut(s)	221
MaeIII	GTNAC	2 cut(s)	100, 290
MalI	GATC	1 cut(s)	60
MboI	GATC	1 cut(s)	58
MboII	GAAGA	1 cut(s)	296
MluCI	AATT	2 cut(s)	8, 211
MnlI	CCTC	5 cut(s)	36, 49, 83, 91, 153
MspA1I	CMGCKG	1 cut(s)	242
MwoI	GCNNNNNNNGC	3 cut(s)	236, 242, 245
NcoI	CCATGG	1 cut(s)	120
NdeI	CATATG	1 cut(s)	226
NdeII	GATC	1 cut(s)	58
NheI	GCTAGC	1 cut(s)	220
NlaIII	CATG	1 cut(s)	124
NmuCI	GTSAC	2 cut(s)	100, 290
PkrI	GCNGC	4 cut(s)	238, 241, 244, 247
PstI	CTGCAG	1 cut(s)	247
PstNI	CAGNNNCTG	1 cut(s)	242
PvuII	CAGCTG	1 cut(s)	242
SatI	GCNGC	4 cut(s)	237, 240, 243, 246
Sau3AI	GATC	1 cut(s)	58
SetI	ASST	6 cut(s)	72, 102, 109, 211, 244, 250
SfaNI	GCATC	1 cut(s)	147
SfcI	CTRYAG	1 cut(s)	243
SgeI	CNNG	7 cut(s)	95, 133, 156, 193, 216, 218, 233
Sse9I	AATT	2 cut(s)	8, 211
SspMI	CTAG	1 cut(s)	221
StyI	CCWWGG	1 cut(s)	120
TaaI	ACNGT	2 cut(s)	169, 275
TasI	AATT	2 cut(s)	8, 211
TseFI	GTSAC	2 cut(s)	100, 290
TseI	GCWGC	4 cut(s)	236, 239, 242, 245
Tsp45I	GTSAC	2 cut(s)	100, 290
TspDTI	ATGAA	2 cut(s)	63, 203
XapI	RAATTY	1 cut(s)	8
XspI	CTAG	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.