Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000599

Physical Location & Seq

Genomic Coordinates Reverse (-)

31994762 .. 31995211

Gene Structure 450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG324300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGCATGAAATATCCGAGCTGAGAGAGCAGCTACTCAAACTTGTCTTTTATCATAGTGGTGTCTCTGGTGGTGAATTTTCATGCATCCATGGTAGTCAGGAAGATGTTGAACATGATTGGAGGGCTGATGTTATCCCTCTTTCTTTGGATGAGGAAGGCCTCTTGTGCTTGGCCATCTGTGCTGGTTGGGCAGATAGAGTTGCCAAGCGCATTAAGGGAAGTAAAAATCAGTATCAAACCTGCTTGAGTAATGAGAATGTCTTCCTCGACCGCCAGTCATCTGTTTCTAAAATTGCTCCTGAATATTTGGTGTACAGTGAGTTGATACAGAGAAAGAAACCATACATGTATGATACGGTGTTACTTGTATCGAACCAGAATGGCTTGTTGACTGTGGTCGGGTCTTATGCAAGCTTCCAAAGGGCAGTGCACCTTACTATGACAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

149

Amino Acids

16.83

Weight (kDa)

5.69

Isoelectric Point (pI)

41.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OB_NTP_bind	PF07717	56 - 120	2.2e-13	Oligonucleotide/oligosaccharide-binding (OB)-fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33390 AT1G33390
fragaria_vesca	FvH4_3g40090 FvH4_3g40090 FvH4_3g40090 FvH4_6g48600
malus_domestica	MD04G1241500.v1.1 MD05G1017800.v1.1
prunus_persica	Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1
pyrus_communis	pycom04g21310 pycom05g01000 pycom05g01050 pycom11g20470
rosa_chinensis	RchiOBHm_Chr2g0168421 RchiOBHm_Chr2g0168431 RchiOBHm_Chr2g0168441 RchiOBHm_Chr2g0168451 RchiOBHm_Chr2g0168461 RchiOBHm_Chr4g0407811 RchiOBHm_Chr7g0220161 RchiOBHm_Chr7g0220171 RchiOBHm_Chr7g0220481
rosa_laevigata	RLG00000002253 RLG00000008696 RLG00000021781
rosa_multiflora	Rmu_co8232135.1_g000001 Rmu_sc0000966.1_g000007 Rmu_sc0003573.1_g000032 Rmu_sc0006361.1_g000012 Rmu_sc0006361.1_g000013 Rmu_sc0012607.1_g000001 Rmu_sc0016657.1_g000009
rosa_roxburghii	Rroxscaffold_2G00083000 Rroxscaffold_2G00083010 Rroxscaffold_3G00239750 Rroxscaffold_5G00352370
rosa_rugosa	Rorug02G0533800 Rorug02G0533800 Rorug04G0081400 Rorug07G0189900 Rorug07G0190000
rosa_samantha	Rh2AG603500 Rh2AG603700 Rh2BG616600 Rh2BG616700 Rh2BG616800 Rh2CG584500 Rh2CG584600 Rh2CG584700 Rh2DG627100 Rh2DG627200 Rh4AG146500 Rh4BG144000 Rh4CG153000 Rh4DG140500 Rh7AG332900 Rh7BG324300 Rh7BG324400 Rh7BG324500 Rh7CG350400 Rh7DG329000
rosa_wichuraiana	Rw0G022710 Rw2G050050 Rw4G011990 Rw7G028060 Rw7G028070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	248
AciI	CCGC	1 cut(s)	271
AcoI	YGGCCR	1 cut(s)	171
AcsI	RAATTY	1 cut(s)	74
AfaI	GTAC	1 cut(s)	314
AflIII	ACRYGT	1 cut(s)	345
AgsI	TTSAA	1 cut(s)	110
AhdI	GACNNNNNGTC	1 cut(s)	274
AluBI	AGCT	3 cut(s)	19, 31, 414
AluI	AGCT	3 cut(s)	19, 31, 414
Alw21I	GWGCWC	1 cut(s)	432
Alw26I	GTCTC	1 cut(s)	67
Alw44I	GTGCAC	1 cut(s)	428
AoxI	GGCC	2 cut(s)	157, 171
ApaLI	GTGCAC	1 cut(s)	428
ApeKI	GCWGC	1 cut(s)	28
ApoI	RAATTY	1 cut(s)	74
Asp700I	GAANNNNTTC	1 cut(s)	260
AspLEI	GCGC	1 cut(s)	210
AsuHPI	GGTGA	1 cut(s)	83
BaeGI	GKGCMC	1 cut(s)	432
BalI	TGGCCA	1 cut(s)	173
BbsI	GAAGAC	1 cut(s)	253
Bbv12I	GWGCWC	1 cut(s)	432
BbvI	GCAGC	1 cut(s)	40
BccI	CCATC	1 cut(s)	182
BcoDI	GTCTC	1 cut(s)	67
BfuAI	ACCTGC	1 cut(s)	248
BisI	GCNGC	1 cut(s)	29
BlsI	GCNGC	1 cut(s)	30
BmeRI	GACNNNNNGTC	1 cut(s)	274
BmsI	GCATC	1 cut(s)	93
BoxI	GACNNNNGTC	1 cut(s)	395
BpiI	GAAGAC	1 cut(s)	253
BpuEI	CTTGAG	1 cut(s)	265
BsaJI	CCNNGG	1 cut(s)	88
Bse1I	ACTGG	1 cut(s)	274
BseDI	CCNNGG	1 cut(s)	88
BseGI	GGATG	2 cut(s)	84, 154
BseMII	CTCAG	1 cut(s)	11
BseNI	ACTGG	1 cut(s)	274
BseSI	GKGCMC	1 cut(s)	432
BseXI	GCAGC	1 cut(s)	40
Bsh1285I	CGRYCG	1 cut(s)	271
BshFI	GGCC	2 cut(s)	159, 173
BsiEI	CGRYCG	1 cut(s)	271
BsiHKAI	GWGCWC	1 cut(s)	432
BsmAI	GTCTC	1 cut(s)	67
BsnI	GGCC	2 cut(s)	159, 173
Bsp1286I	GDGCHC	1 cut(s)	432
Bsp1407I	TGTACA	1 cut(s)	312
Bsp19I	CCATGG	1 cut(s)	88
BspACI	CCGC	1 cut(s)	271
BspANI	GGCC	2 cut(s)	159, 173
BspCNI	CTCAG	1 cut(s)	12
BspMI	ACCTGC	1 cut(s)	248
BsrGI	TGTACA	1 cut(s)	312
BsrI	ACTGG	1 cut(s)	274
BssECI	CCNNGG	1 cut(s)	88
BssT1I	CCWWGG	1 cut(s)	88
Bst4CI	ACNGT	4 cut(s)	317, 358, 394, 445
BstAUI	TGTACA	1 cut(s)	312
BstC8I	GCNNGC	1 cut(s)	412
BstDEI	CTNAG	1 cut(s)	20
BstDSI	CCRYGG	1 cut(s)	88
BstF5I	GGATG	2 cut(s)	84, 154
BstHHI	GCGC	1 cut(s)	210
BstMAI	GTCTC	1 cut(s)	67
BstMCI	CGRYCG	1 cut(s)	271
BstMWI	GCNNNNNNNGC	4 cut(s)	25, 165, 179, 188
BstNSI	RCATGY	1 cut(s)	349
BstPAI	GACNNNNGTC	1 cut(s)	395
BstSLI	GKGCMC	1 cut(s)	432
BstV1I	GCAGC	1 cut(s)	40
BstV2I	GAAGAC	1 cut(s)	253
BsuRI	GGCC	2 cut(s)	159, 173
BtgI	CCRYGG	1 cut(s)	88
BtsCI	GGATG	2 cut(s)	84, 154
BtsI	GCAGTG	1 cut(s)	432
BtsIMutI	CAGTG	3 cut(s)	322, 432, 450
BveI	ACCTGC	1 cut(s)	248
Cac8I	GCNNGC	1 cut(s)	412
CfoI	GCGC	1 cut(s)	210
Csp6I	GTAC	1 cut(s)	313
CviAII	CATG	5 cut(s)	5, 81, 89, 113, 346
CviJI	RGCY	7 cut(s)	19, 31, 125, 159, 173, 384, 414
CviKI_1	RGCY	7 cut(s)	19, 31, 125, 159, 173, 384, 414
CviQI	GTAC	1 cut(s)	313
DdeI	CTNAG	1 cut(s)	20
DriI	GACNNNNNGTC	1 cut(s)	274
EaeI	YGGCCR	1 cut(s)	171
Eam1105I	GACNNNNNGTC	1 cut(s)	274
Eco130I	CCWWGG	1 cut(s)	88
Eco147I	AGGCCT	1 cut(s)	159
EcoT14I	CCWWGG	1 cut(s)	88
EcoT22I	ATGCAT	2 cut(s)	6, 86
ErhI	CCWWGG	1 cut(s)	88
FaeI	CATG	5 cut(s)	8, 84, 92, 116, 349
FatI	CATG	5 cut(s)	4, 80, 88, 112, 345
Fnu4HI	GCNGC	1 cut(s)	29
FokI	GGATG	2 cut(s)	71, 161
Fsp4HI	GCNGC	1 cut(s)	29
GlaI	GCGC	1 cut(s)	209
GluI	GCNGC	1 cut(s)	29
HaeIII	GGCC	2 cut(s)	159, 173
HhaI	GCGC	1 cut(s)	210
Hin1II	CATG	5 cut(s)	8, 84, 92, 116, 349
Hin6I	GCGC	1 cut(s)	208
HinP1I	GCGC	1 cut(s)	208
HincII	GTYRAC	1 cut(s)	390
HindII	GTYRAC	1 cut(s)	390
HindIII	AAGCTT	1 cut(s)	412
HphI	GGTGA	1 cut(s)	83
Hpy166II	GTNNAC	3 cut(s)	313, 390, 430
Hpy188I	TCNGA	1 cut(s)	16
Hpy188III	TCNNGA	2 cut(s)	98, 299
Hpy8I	GTNNAC	3 cut(s)	313, 390, 430
HpyAV	CCTTC	1 cut(s)	149
HpyCH4III	ACNGT	4 cut(s)	317, 358, 394, 445
HpyCH4V	TGCA	4 cut(s)	4, 84, 410, 430
HpyF10VI	GCNNNNNNNGC	4 cut(s)	25, 165, 179, 188
HpyF3I	CTNAG	1 cut(s)	20
Hsp92II	CATG	5 cut(s)	8, 84, 92, 116, 349
HspAI	GCGC	1 cut(s)	208
LmnI	GCTCC	1 cut(s)	301
LpnPI	CCDG	7 cut(s)	51, 83, 168, 253, 287, 312, 389
Lsp1109I	GCAGC	1 cut(s)	40
LweI	GCATC	1 cut(s)	93
MaeIII	GTNAC	1 cut(s)	360
MboII	GAAGA	2 cut(s)	113, 253
MhlI	GDGCHC	1 cut(s)	432
MlsI	TGGCCA	1 cut(s)	173
MluCI	AATT	2 cut(s)	74, 291
MluNI	TGGCCA	1 cut(s)	173
MnlI	CCTC	5 cut(s)	114, 145, 147, 170, 275
Mox20I	TGGCCA	1 cut(s)	173
Mph1103I	ATGCAT	2 cut(s)	6, 86
MroXI	GAANNNNTTC	1 cut(s)	260
MscI	TGGCCA	1 cut(s)	173
MseI	TTAA	1 cut(s)	213
MslI	CAYNNNNRTG	1 cut(s)	57
Msp20I	TGGCCA	1 cut(s)	173
MwoI	GCNNNNNNNGC	4 cut(s)	25, 165, 179, 188
NcoI	CCATGG	1 cut(s)	88
NlaIII	CATG	5 cut(s)	8, 84, 92, 116, 349
NsiI	ATGCAT	2 cut(s)	6, 86
NspI	RCATGY	1 cut(s)	349
PceI	AGGCCT	1 cut(s)	159
PciI	ACATGT	1 cut(s)	345
PdmI	GAANNNNTTC	1 cut(s)	260
PkrI	GCNGC	1 cut(s)	30
PscI	ACATGT	1 cut(s)	345
PshAI	GACNNNNGTC	1 cut(s)	395
RsaI	GTAC	1 cut(s)	314
RsaNI	GTAC	1 cut(s)	313
RseI	CAYNNNNRTG	1 cut(s)	57
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	1 cut(s)	29
SduI	GDGCHC	1 cut(s)	432
SetI	ASST	5 cut(s)	21, 33, 242, 416, 435
SfaNI	GCATC	1 cut(s)	93
SmiMI	CAYNNNNRTG	1 cut(s)	57
SmlI	CTYRAG	1 cut(s)	244
SmoI	CTYRAG	1 cut(s)	244
Sse9I	AATT	2 cut(s)	74, 291
SseBI	AGGCCT	1 cut(s)	159
SsiI	CCGC	1 cut(s)	271
SspI	AATATT	1 cut(s)	305
StuI	AGGCCT	1 cut(s)	159
StyI	CCWWGG	1 cut(s)	88
TaaI	ACNGT	4 cut(s)	317, 358, 394, 445
TaqI	TCGA	2 cut(s)	267, 371
TasI	AATT	2 cut(s)	74, 291
TatI	WGTACW	1 cut(s)	312
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TscAI	CASTG	3 cut(s)	322, 432, 450
TseI	GCWGC	1 cut(s)	28
TspDTI	ATGAA	2 cut(s)	21, 69
TspRI	CASTG	3 cut(s)	322, 432, 450
VneI	GTGCAC	1 cut(s)	428
XapI	RAATTY	1 cut(s)	74
XceI	RCATGY	1 cut(s)	349
XmnI	GAANNNNTTC	1 cut(s)	260
Zsp2I	ATGCAT	2 cut(s)	6, 86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.