ATP-dependent RNA helicase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Helicase_C | PF00271 | 510 - 599 | 2.3e-09 | Helicase conserved C-terminal domain |
| WHD_HA2 | PF04408 | 645 - 673 | 3.2e-07 | Helicase associated domain (HA2), winged-helix |
| OB_NTP_bind | PF07717 | 841 - 914 | 3.4e-17 | Oligonucleotide/oligosaccharide-binding (OB)-fold |
| DHX37_C | PF23362 | 988 - 1065 | 1e-14 | DEAH helicase DHX37 C-terminal domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 857 |
| Acc36I | ACCTGC | 1 cut(s) | 3014 |
| AccB1I | GGYRCC | 1 cut(s) | 438 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2849 |
| AccBSI | CCGCTC | 1 cut(s) | 649 |
| AccI | GTMKAC | 1 cut(s) | 1677 |
| AccII | CGCG | 2 cut(s) | 360, 1773 |
| AccIII | TCCGGA | 2 cut(s) | 3130, 3138 |
| AciI | CCGC | 7 cut(s) | 247, 360, 435, 478, 649, 2626, 2795 |
| AclWI | GGATC | 5 cut(s) | 836, 1947, 2196, 2450, 2671 |
| AcoI | YGGCCR | 2 cut(s) | 1389, 1635 |
| AcsI | RAATTY | 5 cut(s) | 951, 1889, 2239, 2432, 3180 |
| AcuI | CTGAAG | 4 cut(s) | 1104, 1388, 1389, 1401 |
| AfaI | GTAC | 4 cut(s) | 1444, 1740, 2666, 2702 |
| AfeI | AGCGCT | 1 cut(s) | 2768 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 535, 974, 1844, 1913, 2849 |
| AflIII | ACRYGT | 2 cut(s) | 51, 60 |
| AgeI | ACCGGT | 1 cut(s) | 1879 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3024 |
| AhlI | ACTAGT | 1 cut(s) | 532 |
| AjiI | CACGTC | 1 cut(s) | 63 |
| AjnI | CCWGG | 3 cut(s) | 591, 1513, 1657 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2398, 2430 |
| Alw21I | GWGCWC | 4 cut(s) | 95, 662, 795, 2777 |
| Alw26I | GTCTC | 6 cut(s) | 28, 69, 359, 659, 2600, 3011 |
| Alw44I | GTGCAC | 3 cut(s) | 91, 658, 2773 |
| AlwI | GGATC | 5 cut(s) | 836, 1947, 2196, 2450, 2671 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 494, 1351, 2123 |
| Ama87I | CYCGRG | 1 cut(s) | 2085 |
| Aor13HI | TCCGGA | 2 cut(s) | 3130, 3138 |
| Aor51HI | AGCGCT | 1 cut(s) | 2768 |
| AoxI | GGCC | 8 cut(s) | 526, 1371, 1389, 1635, 1796, 1998, 2589, 3011 |
| ApaLI | GTGCAC | 3 cut(s) | 91, 658, 2773 |
| ApoI | RAATTY | 5 cut(s) | 951, 1889, 2239, 2432, 3180 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2144, 2176 |
| AseI | ATTAAT | 1 cut(s) | 924 |
| AsiGI | ACCGGT | 1 cut(s) | 1879 |
| Asp700I | GAANNNNTTC | 6 cut(s) | 682, 1399, 1611, 2241, 2693, 3036 |
| AspLEI | GCGC | 2 cut(s) | 2769, 2918 |
| AspS9I | GGNCC | 2 cut(s) | 640, 1796 |
| AsuC2I | CCSGG | 1 cut(s) | 2345 |
| AsuHPI | GGTGA | 8 cut(s) | 551, 593, 608, 1289, 1636, 1928, 1993, 2622 |
| AsuNHI | GCTAGC | 1 cut(s) | 2101 |
| AvaI | CYCGRG | 1 cut(s) | 2085 |
| AvaII | GGWCC | 1 cut(s) | 640 |
| AxyI | CCTNAGG | 1 cut(s) | 398 |
| BaeGI | GKGCMC | 4 cut(s) | 95, 443, 662, 2777 |
| BalI | TGGCCA | 1 cut(s) | 1391 |
| BanI | GGYRCC | 1 cut(s) | 438 |
| BauI | CACGAG | 1 cut(s) | 264 |
| BbsI | GAAGAC | 2 cut(s) | 825, 2223 |
| Bbv12I | GWGCWC | 4 cut(s) | 95, 662, 795, 2777 |
| BccI | CCATC | 6 cut(s) | 301, 1172, 1176, 1313, 1838, 2936 |
| BceAI | ACGGC | 1 cut(s) | 2719 |
| BciT130I | CCWGG | 3 cut(s) | 593, 1515, 1659 |
| BciVI | GTATCC | 2 cut(s) | 1894, 3138 |
| BclI | TGATCA | 2 cut(s) | 2761, 2905 |
| BcnI | CCSGG | 1 cut(s) | 2345 |
| BcoDI | GTCTC | 6 cut(s) | 28, 69, 359, 659, 2600, 3011 |
| BcuI | ACTAGT | 1 cut(s) | 532 |
| BfaI | CTAG | 3 cut(s) | 533, 1523, 2102 |
| BfmI | CTRYAG | 2 cut(s) | 1563, 2124 |
| BfoI | RGCGCY | 1 cut(s) | 2770 |
| BfuAI | ACCTGC | 1 cut(s) | 3014 |
| BfuI | GTATCC | 2 cut(s) | 1894, 3138 |
| BlpI | GCTNAGC | 2 cut(s) | 504, 1572 |
| Bme1390I | CCNGG | 4 cut(s) | 593, 1515, 1659, 2345 |
| Bme18I | GGWCC | 1 cut(s) | 640 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3024 |
| BmeT110I | CYCGRG | 1 cut(s) | 2085 |
| BmgBI | CACGTC | 1 cut(s) | 63 |
| BmgT120I | GGNCC | 2 cut(s) | 640, 1796 |
| BmiI | GGNNCC | 1 cut(s) | 440 |
| BmrFI | CCNGG | 4 cut(s) | 593, 1515, 1659, 2345 |
| BmrI | ACTGGG | 1 cut(s) | 1005 |
| BmsI | GCATC | 8 cut(s) | 268, 432, 1234, 1370, 1766, 2028, 2251, 3183 |
| BmtI | GCTAGC | 1 cut(s) | 2105 |
| BmuI | ACTGGG | 1 cut(s) | 1005 |
| BpiI | GAAGAC | 2 cut(s) | 825, 2223 |
| BpmI | CTGGAG | 1 cut(s) | 2439 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 504, 1572 |
| BpuMI | CCSGG | 1 cut(s) | 2345 |
| BsaAI | YACGTR | 1 cut(s) | 54 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1200 |
| BsaJI | CCNNGG | 6 cut(s) | 592, 1513, 1658, 2001, 2352, 2982 |
| BsaWI | WCCGGW | 3 cut(s) | 1879, 3130, 3138 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 535, 974, 1844, 1913, 2849 |
| Bse118I | RCCGGY | 1 cut(s) | 1879 |
| Bse1I | ACTGG | 5 cut(s) | 373, 812, 1000, 1687, 2627 |
| Bse21I | CCTNAGG | 1 cut(s) | 398 |
| Bse3DI | GCAATG | 4 cut(s) | 483, 1356, 1978, 2956 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1200 |
| BseAI | TCCGGA | 2 cut(s) | 3130, 3138 |
| BseBI | CCWGG | 3 cut(s) | 593, 1515, 1659 |
| BseDI | CCNNGG | 6 cut(s) | 592, 1513, 1658, 2001, 2352, 2982 |
| BseGI | GGATG | 3 cut(s) | 17, 377, 2488 |
| BseJI | GATNNNNATC | 1 cut(s) | 1200 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 535, 974, 1844, 1913, 2849 |
| BseMI | GCAATG | 4 cut(s) | 483, 1356, 1978, 2956 |
| BseMII | CTCAG | 8 cut(s) | 209, 412, 905, 912, 1586, 2363, 2514, 2643 |
| BseNI | ACTGG | 5 cut(s) | 373, 812, 1000, 1687, 2627 |
| BseRI | GAGGAG | 4 cut(s) | 557, 1896, 1943, 2375 |
| BseSI | GKGCMC | 4 cut(s) | 95, 443, 662, 2777 |
| BseYI | CCCAGC | 2 cut(s) | 186, 3058 |
| BsgI | GTGCAG | 2 cut(s) | 36, 198 |
| Bsh1236I | CGCG | 2 cut(s) | 360, 1773 |
| BshFI | GGCC | 8 cut(s) | 528, 1373, 1391, 1637, 1798, 2000, 2591, 3013 |
| BshNI | GGYRCC | 1 cut(s) | 438 |
| BshTI | ACCGGT | 1 cut(s) | 1879 |
| BsiHKAI | GWGCWC | 4 cut(s) | 95, 662, 795, 2777 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2085 |
| BsiSI | CCGG | 5 cut(s) | 9, 1880, 2345, 3131, 3139 |
| BslFI | GGGAC | 2 cut(s) | 1504, 1820 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 535, 974, 1844, 1913, 2849 |
| BsmAI | GTCTC | 6 cut(s) | 28, 69, 359, 659, 2600, 3011 |
| BsmBI | CGTCTC | 2 cut(s) | 69, 659 |
| BsmFI | GGGAC | 2 cut(s) | 1504, 1820 |
| BsmI | GAATGC | 3 cut(s) | 10, 340, 684 |
| BsnI | GGCC | 8 cut(s) | 528, 1373, 1391, 1637, 1798, 2000, 2591, 3013 |
| BsoBI | CYCGRG | 1 cut(s) | 2085 |
| Bsp1286I | GDGCHC | 5 cut(s) | 95, 443, 662, 795, 2777 |
| Bsp13I | TCCGGA | 2 cut(s) | 3130, 3138 |
| Bsp1407I | TGTACA | 1 cut(s) | 2664 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 504, 1572 |
| Bsp19I | CCATGG | 3 cut(s) | 2001, 2352, 2982 |
| BspACI | CCGC | 7 cut(s) | 247, 360, 435, 478, 649, 2626, 2795 |
| BspANI | GGCC | 8 cut(s) | 528, 1373, 1391, 1637, 1798, 2000, 2591, 3013 |
| BspCNI | CTCAG | 8 cut(s) | 210, 411, 904, 911, 1585, 2364, 2513, 2644 |
| BspEI | TCCGGA | 2 cut(s) | 3130, 3138 |
| BspFNI | CGCG | 2 cut(s) | 360, 1773 |
| BspHI | TCATGA | 1 cut(s) | 795 |
| BspLI | GGNNCC | 1 cut(s) | 440 |
| BspMAI | CTGCAG | 2 cut(s) | 1567, 2128 |
| BspMI | ACCTGC | 1 cut(s) | 3014 |
| BspOI | GCTAGC | 1 cut(s) | 2105 |
| BspPI | GGATC | 5 cut(s) | 836, 1947, 2196, 2450, 2671 |
| BspQI | GCTCTTC | 1 cut(s) | 1774 |
| BspT107I | GGYRCC | 1 cut(s) | 438 |
| BsrBI | CCGCTC | 1 cut(s) | 649 |
| BsrDI | GCAATG | 4 cut(s) | 483, 1356, 1978, 2956 |
| BsrFI | RCCGGY | 1 cut(s) | 1879 |
| BsrGI | TGTACA | 1 cut(s) | 2664 |
| BsrI | ACTGG | 5 cut(s) | 373, 812, 1000, 1687, 2627 |
| BssAI | RCCGGY | 1 cut(s) | 1879 |
| BssECI | CCNNGG | 6 cut(s) | 592, 1513, 1658, 2001, 2352, 2982 |
| BssSI | CACGAG | 1 cut(s) | 264 |
| BssT1I | CCWWGG | 3 cut(s) | 2001, 2352, 2982 |
| Bst2BI | CACGAG | 1 cut(s) | 264 |
| Bst2UI | CCWGG | 3 cut(s) | 593, 1515, 1659 |
| Bst6I | CTCTTC | 2 cut(s) | 605, 1774 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 494, 2123 |
| BstAUI | TGTACA | 1 cut(s) | 2664 |
| BstBAI | YACGTR | 1 cut(s) | 54 |
| BstC8I | GCNNGC | 4 cut(s) | 1423, 2103, 2593, 2751 |
| BstDSI | CCRYGG | 3 cut(s) | 2001, 2352, 2982 |
| BstEII | GGTNACC | 1 cut(s) | 2628 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 972 |
| BstF5I | GGATG | 3 cut(s) | 17, 377, 2488 |
| BstFNI | CGCG | 2 cut(s) | 360, 1773 |
| BstH2I | RGCGCY | 1 cut(s) | 2770 |
| BstHHI | GCGC | 2 cut(s) | 2769, 2918 |
| BstMAI | GTCTC | 6 cut(s) | 28, 69, 359, 659, 2600, 3011 |
| BstNI | CCWGG | 3 cut(s) | 593, 1515, 1659 |
| BstPI | GGTNACC | 1 cut(s) | 2628 |
| BstSCI | CCNGG | 4 cut(s) | 591, 1513, 1657, 2343 |
| BstSFI | CTRYAG | 2 cut(s) | 1563, 2124 |
| BstSLI | GKGCMC | 4 cut(s) | 95, 443, 662, 2777 |
| BstUI | CGCG | 2 cut(s) | 360, 1773 |
| BstV2I | GAAGAC | 2 cut(s) | 825, 2223 |
| BstX2I | RGATCY | 2 cut(s) | 841, 2442 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 814 |
| BstYI | RGATCY | 2 cut(s) | 841, 2442 |
| Bsu36I | CCTNAGG | 1 cut(s) | 398 |
| BsuI | GTATCC | 2 cut(s) | 1894, 3138 |
| BsuRI | GGCC | 8 cut(s) | 528, 1373, 1391, 1637, 1798, 2000, 2591, 3013 |
| BtgI | CCRYGG | 3 cut(s) | 2001, 2352, 2982 |
| BtrI | CACGTC | 1 cut(s) | 63 |
| BtsCI | GGATG | 3 cut(s) | 17, 377, 2488 |
| BtsI | GCAGTG | 4 cut(s) | 492, 962, 1529, 2263 |
| BveI | ACCTGC | 1 cut(s) | 3014 |
| Cac8I | GCNNGC | 4 cut(s) | 1423, 2103, 2593, 2751 |
| CaiI | CAGNNNCTG | 3 cut(s) | 494, 1351, 2123 |
| CciI | TCATGA | 1 cut(s) | 795 |
| CfoI | GCGC | 2 cut(s) | 2769, 2918 |
| Cfr10I | RCCGGY | 1 cut(s) | 1879 |
| Cfr13I | GGNCC | 2 cut(s) | 640, 1796 |
| CseI | GACGC | 3 cut(s) | 676, 728, 1565 |
| Csp6I | GTAC | 4 cut(s) | 1443, 1739, 2665, 2701 |
| CspAI | ACCGGT | 1 cut(s) | 1879 |
| CviQI | GTAC | 4 cut(s) | 1443, 1739, 2665, 2701 |
| DraI | TTTAAA | 1 cut(s) | 880 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3024 |
| EaeI | YGGCCR | 2 cut(s) | 1389, 1635 |
| Eam1104I | CTCTTC | 2 cut(s) | 605, 1774 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3024 |
| EarI | CTCTTC | 2 cut(s) | 605, 1774 |
| EciI | GGCGGA | 1 cut(s) | 2784 |
| Eco130I | CCWWGG | 3 cut(s) | 2001, 2352, 2982 |
| Eco147I | AGGCCT | 2 cut(s) | 1373, 2591 |
| Eco47I | GGWCC | 1 cut(s) | 640 |
| Eco47III | AGCGCT | 1 cut(s) | 2768 |
| Eco57I | CTGAAG | 4 cut(s) | 1104, 1388, 1389, 1401 |
| Eco81I | CCTNAGG | 1 cut(s) | 398 |
| Eco88I | CYCGRG | 1 cut(s) | 2085 |
| Eco91I | GGTNACC | 1 cut(s) | 2628 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 972 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1796 |
| EcoO65I | GGTNACC | 1 cut(s) | 2628 |
| EcoRII | CCWGG | 3 cut(s) | 591, 1513, 1657 |
| EcoT14I | CCWWGG | 3 cut(s) | 2001, 2352, 2982 |
| ErhI | CCWWGG | 3 cut(s) | 2001, 2352, 2982 |
| Esp3I | CGTCTC | 2 cut(s) | 69, 659 |
| FaqI | GGGAC | 2 cut(s) | 1504, 1820 |
| FauI | CCCGC | 2 cut(s) | 428, 485 |
| FauNDI | CATATG | 2 cut(s) | 517, 2107 |
| FbaI | TGATCA | 2 cut(s) | 2761, 2905 |
| FblI | GTMKAC | 1 cut(s) | 1677 |
| FokI | GGATG | 3 cut(s) | 24, 384, 2495 |
| FspBI | CTAG | 3 cut(s) | 533, 1523, 2102 |
| GlaI | GCGC | 2 cut(s) | 2768, 2917 |
| GsaI | CCCAGC | 2 cut(s) | 190, 3062 |
| GsuI | CTGGAG | 1 cut(s) | 2439 |
| HaeII | RGCGCY | 1 cut(s) | 2770 |
| HaeIII | GGCC | 8 cut(s) | 528, 1373, 1391, 1637, 1798, 2000, 2591, 3013 |
| HapII | CCGG | 5 cut(s) | 9, 1880, 2345, 3131, 3139 |
| HgaI | GACGC | 3 cut(s) | 676, 728, 1565 |
| HhaI | GCGC | 2 cut(s) | 2769, 2918 |
| Hin6I | GCGC | 2 cut(s) | 2767, 2916 |
| HinP1I | GCGC | 2 cut(s) | 2767, 2916 |
| HincII | GTYRAC | 1 cut(s) | 1678 |
| HindII | GTYRAC | 1 cut(s) | 1678 |
| HindIII | AAGCTT | 5 cut(s) | 785, 1335, 1383, 2492, 2925 |
| HinfI | GANTC | 8 cut(s) | 166, 233, 1232, 1289, 1348, 1409, 1451, 2978 |
| HpaII | CCGG | 5 cut(s) | 9, 1880, 2345, 3131, 3139 |
| HphI | GGTGA | 8 cut(s) | 551, 593, 608, 1289, 1636, 1928, 1993, 2622 |
| Hpy166II | GTNNAC | 6 cut(s) | 93, 660, 1529, 1678, 2665, 2775 |
| Hpy188I | TCNGA | 9 cut(s) | 34, 228, 677, 708, 1353, 1408, 1816, 2236, 2457 |
| Hpy8I | GTNNAC | 6 cut(s) | 93, 660, 1529, 1678, 2665, 2775 |
| HpyCH4IV | ACGT | 3 cut(s) | 53, 62, 2992 |
| HpySE526I | ACGT | 3 cut(s) | 53, 62, 2992 |
| HspAI | GCGC | 2 cut(s) | 2767, 2916 |
| Kpn2I | TCCGGA | 2 cut(s) | 3130, 3138 |
| Ksp22I | TGATCA | 2 cut(s) | 2761, 2905 |
| LguI | GCTCTTC | 1 cut(s) | 1774 |
| LmnI | GCTCC | 8 cut(s) | 310, 651, 1956, 2046, 2388, 2653, 2869, 3141 |
| LweI | GCATC | 8 cut(s) | 268, 432, 1234, 1370, 1766, 2028, 2251, 3183 |
| MaeI | CTAG | 3 cut(s) | 533, 1523, 2102 |
| MaeII | ACGT | 3 cut(s) | 53, 62, 2992 |
| MaeIII | GTNAC | 6 cut(s) | 466, 490, 1624, 1981, 2628, 2836 |
| MbiI | CCGCTC | 1 cut(s) | 649 |
| MfeI | CAATTG | 1 cut(s) | 1065 |
| MflI | RGATCY | 2 cut(s) | 841, 2442 |
| MhlI | GDGCHC | 5 cut(s) | 95, 443, 662, 795, 2777 |
| MlsI | TGGCCA | 1 cut(s) | 1391 |
| MluNI | TGGCCA | 1 cut(s) | 1391 |
| MlyI | GAGTC | 3 cut(s) | 175, 1403, 2987 |
| MmeI | TCCRAC | 4 cut(s) | 529, 1209, 2525, 2867 |
| Mox20I | TGGCCA | 1 cut(s) | 1391 |
| MroI | TCCGGA | 2 cut(s) | 3130, 3138 |
| MroXI | GAANNNNTTC | 6 cut(s) | 682, 1399, 1611, 2241, 2693, 3036 |
| MscI | TGGCCA | 1 cut(s) | 1391 |
| MseI | TTAA | 8 cut(s) | 879, 924, 1056, 1649, 2172, 2400, 3008, 3150 |
| MslI | CAYNNNNRTG | 2 cut(s) | 302, 812 |
| Msp20I | TGGCCA | 1 cut(s) | 1391 |
| MspA1I | CMGCKG | 3 cut(s) | 20, 480, 2123 |
| MspI | CCGG | 5 cut(s) | 9, 1880, 2345, 3131, 3139 |
| MspR9I | CCNGG | 4 cut(s) | 593, 1515, 1659, 2345 |
| MunI | CAATTG | 1 cut(s) | 1065 |
| Mva1269I | GAATGC | 3 cut(s) | 10, 340, 684 |
| MvaI | CCWGG | 3 cut(s) | 593, 1515, 1659 |
| MvnI | CGCG | 2 cut(s) | 360, 1773 |
| NciI | CCSGG | 1 cut(s) | 2345 |
| NcoI | CCATGG | 3 cut(s) | 2001, 2352, 2982 |
| NdeI | CATATG | 2 cut(s) | 517, 2107 |
| NheI | GCTAGC | 1 cut(s) | 2101 |
| NlaIV | GGNNCC | 1 cut(s) | 440 |
| NmuCI | GTSAC | 5 cut(s) | 490, 1624, 1981, 2628, 2836 |
| PagI | TCATGA | 1 cut(s) | 795 |
| PceI | AGGCCT | 2 cut(s) | 1373, 2591 |
| PciSI | GCTCTTC | 1 cut(s) | 1774 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 59 |
| PctI | GAATGC | 3 cut(s) | 10, 340, 684 |
| PdmI | GAANNNNTTC | 6 cut(s) | 682, 1399, 1611, 2241, 2693, 3036 |
| PfeI | GAWTC | 5 cut(s) | 233, 1232, 1289, 1348, 1451 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2849 |
| PinAI | ACCGGT | 1 cut(s) | 1879 |
| PleI | GAGTC | 3 cut(s) | 174, 1403, 2986 |
| PpsI | GAGTC | 3 cut(s) | 174, 1403, 2986 |
| Ppu21I | YACGTR | 1 cut(s) | 54 |
| PshBI | ATTAAT | 1 cut(s) | 924 |
| PsiI | TTATAA | 1 cut(s) | 857 |
| Psp6I | CCWGG | 3 cut(s) | 591, 1513, 1657 |
| PspEI | GGTNACC | 1 cut(s) | 2628 |
| PspFI | CCCAGC | 2 cut(s) | 186, 3058 |
| PspGI | CCWGG | 3 cut(s) | 591, 1513, 1657 |
| PspN4I | GGNNCC | 1 cut(s) | 440 |
| PspPI | GGNCC | 2 cut(s) | 640, 1796 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2505, 2537 |
| PstI | CTGCAG | 2 cut(s) | 1567, 2128 |
| PstNI | CAGNNNCTG | 3 cut(s) | 494, 1351, 2123 |
| PsuI | RGATCY | 2 cut(s) | 841, 2442 |
| PvuII | CAGCTG | 2 cut(s) | 20, 2123 |
| RsaI | GTAC | 4 cut(s) | 1444, 1740, 2666, 2702 |
| RsaNI | GTAC | 4 cut(s) | 1443, 1739, 2665, 2701 |
| RseI | CAYNNNNRTG | 2 cut(s) | 302, 812 |
| SalI | GTCGAC | 1 cut(s) | 1676 |
| SapI | GCTCTTC | 1 cut(s) | 1774 |
| SaqAI | TTAA | 8 cut(s) | 879, 924, 1056, 1649, 2172, 2400, 3008, 3150 |
| Sau96I | GGNCC | 2 cut(s) | 640, 1796 |
| SchI | GAGTC | 3 cut(s) | 175, 1403, 2987 |
| ScrFI | CCNGG | 4 cut(s) | 593, 1515, 1659, 2345 |
| SduI | GDGCHC | 5 cut(s) | 95, 443, 662, 795, 2777 |
| SfaNI | GCATC | 8 cut(s) | 268, 432, 1234, 1370, 1766, 2028, 2251, 3183 |
| SfcI | CTRYAG | 2 cut(s) | 1563, 2124 |
| SinI | GGWCC | 1 cut(s) | 640 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 302, 812 |
| SpeI | ACTAGT | 1 cut(s) | 532 |
| SseBI | AGGCCT | 2 cut(s) | 1373, 2591 |
| SsiI | CCGC | 7 cut(s) | 247, 360, 435, 478, 649, 2626, 2795 |
| SspI | AATATT | 1 cut(s) | 85 |
| SspMI | CTAG | 3 cut(s) | 533, 1523, 2102 |
| StuI | AGGCCT | 2 cut(s) | 1373, 2591 |
| StyD4I | CCNGG | 4 cut(s) | 591, 1513, 1657, 2343 |
| StyI | CCWWGG | 3 cut(s) | 2001, 2352, 2982 |
| TaiI | ACGT | 3 cut(s) | 56, 65, 2995 |
| TaqI | TCGA | 3 cut(s) | 1677, 2940, 3028 |
| TatI | WGTACW | 3 cut(s) | 1442, 1738, 2664 |
| TauI | GCSGC | 1 cut(s) | 250 |
| TfiI | GAWTC | 5 cut(s) | 233, 1232, 1289, 1348, 1451 |
| Tru1I | TTAA | 8 cut(s) | 879, 924, 1056, 1649, 2172, 2400, 3008, 3150 |
| Tru9I | TTAA | 8 cut(s) | 879, 924, 1056, 1649, 2172, 2400, 3008, 3150 |
| TseFI | GTSAC | 5 cut(s) | 490, 1624, 1981, 2628, 2836 |
| Tsp45I | GTSAC | 5 cut(s) | 490, 1624, 1981, 2628, 2836 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2849 |
| VneI | GTGCAC | 3 cut(s) | 91, 658, 2773 |
| VpaK11BI | GGWCC | 1 cut(s) | 640 |
| VspI | ATTAAT | 1 cut(s) | 924 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 972 |
| XapI | RAATTY | 5 cut(s) | 951, 1889, 2239, 2432, 3180 |
| XcmI | CCANNNNNNNNNTGG | 4 cut(s) | 183, 304, 1175, 2311 |
| XmiI | GTMKAC | 1 cut(s) | 1677 |
| XmnI | GAANNNNTTC | 6 cut(s) | 682, 1399, 1611, 2241, 2693, 3036 |
| XspI | CTAG | 3 cut(s) | 533, 1523, 2102 |