Rmu_sc0016657.1_g000009

ATP-dependent RNA helicase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0016657.1
Physical Location & Seq
Forward (+)
50248 .. 51495
1248 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0016657.1_g000009.1.cds

Sequence Viewer

Length: 1248 bp
atggcttattatcccataagtcctcgccactctaagatgctcctaacagtcatcaaaatgttgaataaggagaaaagttataaacgacctaatttagtactagcatatgcagttgcttcagctgcagctttgagtttgtcaaatatttttgttagtcagtttgaagacagttgcacagaaaaccatgacttaattgatggaaattccagtgctccagttcacggtgaagttatagacaagcaagagagagtaatcaaagagaagaaagtgagagcgtcttgtgaaaattttagtagtcatagcagtgatgccctttccagagcttatgttttgcggctctatgaactttccaagagccgattgcatttctgcaaggacaatgctctacacccagaaaccatgcatgaaatatccgagctgagagagcagctactcaaacttgtcttttatcatagtggtgtgtctggcggtgaattttcatggatccatggtagtcaggaagatgttgagcatgattggagggctgatgttatccctctttctttggatgaggaaggcctcttgtgccgggccatctgtgctggttgggcagatagagttgccaagcgcattaaaggaagtaaaaatcaatatcaaacctgcttgagtaatgagaatgtcttcctcgaccgccagtcatctgtttctaaaattgctcctgaatatttggtgtacagtgagttgatacagaaaaagaaaccatacatgcacggtgttacttgtatcgaaccagaatggcttgttgactgtggtcgggtcttatgcaagcttccaaagggcagtgcaccttactatgactgtgtaagtgacaaggtactatacaatgtcactccaacctttggtcctcatttgtggaagcttccggaacattgtttgcctattgataagactgagtttaaaggtgcagtgcaagcttttgcttttgctttgttggacggcaaggttctgcgttgcctgagacctgtgcgtgcattcatggcagaacatcctcgtactgttttaaagccggtggcagcaaatcgagaacgggttcagaatctcttgttgaagttgggggagaagaagatacacagccgtgctatgttgagagaagtgtggagtaaaaatcccaacgaattgtatctggaaatccggaactggtttagaaagaatttccactataagtttaaggatatttgggtcgaaatgcttcgcgaagccatttactaa

Protein Analysis

415

Amino Acids

47.78

Weight (kDa)

8.83

Isoelectric Point (pI)

41.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000599)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33390 AT1G33390
fragaria_vesca FvH4_3g40090 FvH4_3g40090 FvH4_3g40090 FvH4_6g48600
malus_domestica MD04G1241500.v1.1 MD05G1017800.v1.1
prunus_persica Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1
pyrus_communis pycom04g21310 pycom05g01000 pycom05g01050 pycom11g20470
rosa_chinensis RchiOBHm_Chr2g0168421 RchiOBHm_Chr2g0168431 RchiOBHm_Chr2g0168441 RchiOBHm_Chr2g0168451 RchiOBHm_Chr2g0168461 RchiOBHm_Chr4g0407811 RchiOBHm_Chr7g0220161 RchiOBHm_Chr7g0220171 RchiOBHm_Chr7g0220481
rosa_laevigata RLG00000002253 RLG00000008696 RLG00000021781
rosa_multiflora Rmu_co8232135.1_g000001 Rmu_sc0000966.1_g000007 Rmu_sc0003573.1_g000032 Rmu_sc0006361.1_g000012 Rmu_sc0006361.1_g000013 Rmu_sc0012607.1_g000001 Rmu_sc0016657.1_g000009
rosa_roxburghii Rroxscaffold_2G00083000 Rroxscaffold_2G00083010 Rroxscaffold_3G00239750 Rroxscaffold_5G00352370
rosa_rugosa Rorug02G0533800 Rorug02G0533800 Rorug04G0081400 Rorug07G0189900 Rorug07G0190000
rosa_samantha Rh2AG603500 Rh2AG603700 Rh2BG616600 Rh2BG616700 Rh2BG616800 Rh2CG584500 Rh2CG584600 Rh2CG584700 Rh2DG627100 Rh2DG627200 Rh4AG146500 Rh4BG144000 Rh4CG153000 Rh4DG140500 Rh7AG332900 Rh7BG324300 Rh7BG324400 Rh7BG324500 Rh7CG350400 Rh7DG329000
rosa_wichuraiana Rw0G022710 Rw2G050050 Rw4G011990 Rw7G028060 Rw7G028070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 81
Acc36I ACCTGC 1 cut(s) 647
AccB7I CCANNNNNTGG 1 cut(s) 878
AccII CGCG 1 cut(s) 1233
AccIII TCCGGA 2 cut(s) 901, 1170
AciI CCGC 3 cut(s) 334, 468, 670
AclWI GGATC 2 cut(s) 478, 491
AcsI RAATTY 4 cut(s) 202, 286, 473, 1189
AcuI CTGAAG 1 cut(s) 102
AfaI GTAC 4 cut(s) 99, 713, 855, 1033
AfiI CCNNNNNNNGG 2 cut(s) 221, 878
AgsI TTSAA 3 cut(s) 64, 164, 1087
AhdI GACNNNNNGTC 1 cut(s) 673
AleI CACNNNNGTG 1 cut(s) 1113
AluBI AGCT 8 cut(s) 122, 128, 323, 418, 430, 808, 898, 953
AluI AGCT 8 cut(s) 122, 128, 323, 418, 430, 808, 898, 953
Alw21I GWGCWC 2 cut(s) 214, 826
Alw26I GTCTC 1 cut(s) 991
Alw44I GTGCAC 1 cut(s) 822
AlwI GGATC 2 cut(s) 478, 491
Aor13HI TCCGGA 2 cut(s) 901, 1170
AoxI GGCC 2 cut(s) 556, 570
ApaLI GTGCAC 1 cut(s) 822
ApeKI GCWGC 4 cut(s) 122, 125, 427, 1052
ApoI RAATTY 4 cut(s) 202, 286, 473, 1189
Asp700I GAANNNNTTC 3 cut(s) 659, 1068, 1227
AspLEI GCGC 1 cut(s) 609
AspS9I GGNCC 2 cut(s) 570, 881
AsuC2I CCSGG 1 cut(s) 569
AsuHPI GGTGA 2 cut(s) 236, 482
AvaII GGWCC 1 cut(s) 881
BaeGI GKGCMC 1 cut(s) 826
BamHI GGATCC 1 cut(s) 483
BbsI GAAGAC 2 cut(s) 171, 652
Bbv12I GWGCWC 2 cut(s) 214, 826
BbvI GCAGC 4 cut(s) 109, 137, 439, 1064
BccI CCATC 2 cut(s) 191, 581
BceAI ACGGC 2 cut(s) 991, 1098
BcnI CCSGG 1 cut(s) 569
BcoDI GTCTC 1 cut(s) 991
BfaI CTAG 1 cut(s) 101
BfmI CTRYAG 1 cut(s) 123
BfuAI ACCTGC 1 cut(s) 647
BisI GCNGC 5 cut(s) 123, 126, 335, 428, 1053
BlsI GCNGC 5 cut(s) 124, 127, 336, 429, 1054
BmcAI AGTACT 1 cut(s) 99
Bme1390I CCNGG 1 cut(s) 569
Bme18I GGWCC 1 cut(s) 881
BmeRI GACNNNNNGTC 1 cut(s) 673
BmgT120I GGNCC 2 cut(s) 570, 881
BmiI GGNNCC 1 cut(s) 485
BmrFI CCNGG 1 cut(s) 569
BmsI GCATC 2 cut(s) 27, 298
BoxI GACNNNNGTC 1 cut(s) 789
BpiI GAAGAC 2 cut(s) 171, 652
BpmI CTGGAG 1 cut(s) 198
BpuEI CTTGAG 1 cut(s) 664
BpuMI CCSGG 1 cut(s) 569
BsaI GGTCTC 1 cut(s) 991
BsaJI CCNNGG 1 cut(s) 487
BsaWI WCCGGW 2 cut(s) 901, 1170
Bsc4I CCNNNNNNNGG 2 cut(s) 221, 878
Bse118I RCCGGY 1 cut(s) 1045
Bse1I ACTGG 4 cut(s) 207, 215, 673, 1181
BseAI TCCGGA 2 cut(s) 901, 1170
BseDI CCNNGG 1 cut(s) 487
BseGI GGATG 2 cut(s) 553, 1024
BseLI CCNNNNNNNGG 2 cut(s) 221, 878
BseMII CTCAG 3 cut(s) 410, 921, 986
BseNI ACTGG 4 cut(s) 207, 215, 673, 1181
BseSI GKGCMC 1 cut(s) 826
BseXI GCAGC 4 cut(s) 109, 137, 439, 1064
BsgI GTGCAG 1 cut(s) 963
Bsh1236I CGCG 1 cut(s) 1233
Bsh1285I CGRYCG 1 cut(s) 670
BshFI GGCC 2 cut(s) 558, 572
BsiEI CGRYCG 1 cut(s) 670
BsiHKAI GWGCWC 2 cut(s) 214, 826
BsiSI CCGG 4 cut(s) 568, 902, 1046, 1171
BslI CCNNNNNNNGG 2 cut(s) 221, 878
BsmAI GTCTC 1 cut(s) 991
BsmI GAATGC 1 cut(s) 1010
BsnI GGCC 2 cut(s) 558, 572
Bso31I GGTCTC 1 cut(s) 991
Bsp1286I GDGCHC 2 cut(s) 214, 826
Bsp13I TCCGGA 2 cut(s) 901, 1170
Bsp1407I TGTACA 1 cut(s) 711
Bsp143I GATC 1 cut(s) 483
Bsp19I CCATGG 1 cut(s) 487
Bsp68I TCGCGA 1 cut(s) 1233
BspACI CCGC 3 cut(s) 334, 468, 670
BspANI GGCC 2 cut(s) 558, 572
BspCNI CTCAG 3 cut(s) 411, 922, 987
BspEI TCCGGA 2 cut(s) 901, 1170
BspFNI CGCG 1 cut(s) 1233
BspLI GGNNCC 1 cut(s) 485
BspMAI CTGCAG 1 cut(s) 127
BspMI ACCTGC 1 cut(s) 647
BspPI GGATC 2 cut(s) 478, 491
BspTNI GGTCTC 1 cut(s) 991
BsrFI RCCGGY 1 cut(s) 1045
BsrGI TGTACA 1 cut(s) 711
BsrI ACTGG 4 cut(s) 207, 215, 673, 1181
BssAI RCCGGY 1 cut(s) 1045
BssECI CCNNGG 1 cut(s) 487
BssMI GATC 1 cut(s) 483
BssT1I CCWWGG 1 cut(s) 487
Bst4CI ACNGT 8 cut(s) 49, 170, 224, 716, 752, 788, 839, 1036
BstAUI TGTACA 1 cut(s) 711
BstC8I GCNNGC 3 cut(s) 806, 951, 1008
BstDEI CTNAG 4 cut(s) 33, 419, 930, 995
BstDSI CCRYGG 1 cut(s) 487
BstF5I GGATG 2 cut(s) 553, 1024
BstFNI CGCG 1 cut(s) 1233
BstHHI GCGC 1 cut(s) 609
BstKTI GATC 1 cut(s) 486
BstMAI GTCTC 1 cut(s) 991
BstMBI GATC 1 cut(s) 483
BstMCI CGRYCG 1 cut(s) 670
BstMWI GCNNNNNNNGC 7 cut(s) 122, 424, 564, 578, 587, 950, 1016
BstNSI RCATGY 1 cut(s) 748
BstPAI GACNNNNGTC 1 cut(s) 789
BstSCI CCNGG 1 cut(s) 567
BstSFI CTRYAG 1 cut(s) 123
BstSLI GKGCMC 1 cut(s) 826
BstUI CGCG 1 cut(s) 1233
BstV1I GCAGC 4 cut(s) 109, 137, 439, 1064
BstV2I GAAGAC 2 cut(s) 171, 652
BstX2I RGATCY 1 cut(s) 483
BstYI RGATCY 1 cut(s) 483
BsuRI GGCC 2 cut(s) 558, 572
BtgI CCRYGG 1 cut(s) 487
BtsCI GGATG 2 cut(s) 553, 1024
BtsI GCAGTG 3 cut(s) 310, 826, 951
BtsIMutI CAGTG 5 cut(s) 214, 310, 721, 826, 951
BtuMI TCGCGA 1 cut(s) 1233
BveI ACCTGC 1 cut(s) 647
Cac8I GCNNGC 3 cut(s) 806, 951, 1008
CfoI GCGC 1 cut(s) 609
Cfr10I RCCGGY 1 cut(s) 1045
Cfr13I GGNCC 2 cut(s) 570, 881
CseI GACGC 1 cut(s) 264
Csp6I GTAC 4 cut(s) 98, 712, 854, 1032
CviAII CATG 8 cut(s) 185, 400, 404, 480, 488, 512, 745, 1015
CviQI GTAC 4 cut(s) 98, 712, 854, 1032
DdeI CTNAG 4 cut(s) 33, 419, 930, 995
DpnI GATC 1 cut(s) 485
DpnII GATC 1 cut(s) 483
DraI TTTAAA 2 cut(s) 937, 1041
DriI GACNNNNNGTC 1 cut(s) 673
Eam1105I GACNNNNNGTC 1 cut(s) 673
Eco130I CCWWGG 1 cut(s) 487
Eco147I AGGCCT 1 cut(s) 558
Eco31I GGTCTC 1 cut(s) 991
Eco47I GGWCC 1 cut(s) 881
Eco57I CTGAAG 1 cut(s) 102
EcoT14I CCWWGG 1 cut(s) 487
EcoT22I ATGCAT 1 cut(s) 405
ErhI CCWWGG 1 cut(s) 487
FaeI CATG 8 cut(s) 188, 403, 407, 483, 491, 515, 748, 1018
FatI CATG 8 cut(s) 184, 399, 403, 479, 487, 511, 744, 1014
FauNDI CATATG 1 cut(s) 106
Fnu4HI GCNGC 5 cut(s) 123, 126, 335, 428, 1053
FokI GGATG 2 cut(s) 560, 1011
Fsp4HI GCNGC 5 cut(s) 123, 126, 335, 428, 1053
FspBI CTAG 1 cut(s) 101
GlaI GCGC 1 cut(s) 608
GluI GCNGC 5 cut(s) 123, 126, 335, 428, 1053
GsuI CTGGAG 1 cut(s) 198
HaeIII GGCC 2 cut(s) 558, 572
HapII CCGG 4 cut(s) 568, 902, 1046, 1171
HgaI GACGC 1 cut(s) 264
HhaI GCGC 1 cut(s) 609
Hin1II CATG 8 cut(s) 188, 403, 407, 483, 491, 515, 748, 1018
Hin6I GCGC 1 cut(s) 607
HinP1I GCGC 1 cut(s) 607
HincII GTYRAC 1 cut(s) 784
HindII GTYRAC 1 cut(s) 784
HindIII AAGCTT 3 cut(s) 806, 896, 951
HinfI GANTC 1 cut(s) 1075
HpaII CCGG 4 cut(s) 568, 902, 1046, 1171
HphI GGTGA 2 cut(s) 236, 482
Hpy166II GTNNAC 4 cut(s) 220, 712, 784, 824
Hpy188I TCNGA 2 cut(s) 415, 1074
Hpy188III TCNNGA 8 cut(s) 318, 497, 698, 902, 1061, 1163, 1171, 1232
Hpy8I GTNNAC 4 cut(s) 220, 712, 784, 824
HpyAV CCTTC 1 cut(s) 548
HpyCH4III ACNGT 8 cut(s) 49, 170, 224, 716, 752, 788, 839, 1036
HpyF10VI GCNNNNNNNGC 7 cut(s) 122, 424, 564, 578, 587, 950, 1016
HpyF3I CTNAG 4 cut(s) 33, 419, 930, 995
Hsp92II CATG 8 cut(s) 188, 403, 407, 483, 491, 515, 748, 1018
HspAI GCGC 1 cut(s) 607
Kpn2I TCCGGA 2 cut(s) 901, 1170
Kzo9I GATC 1 cut(s) 483
LmnI GCTCC 3 cut(s) 45, 217, 700
Lsp1109I GCAGC 4 cut(s) 109, 137, 439, 1064
LweI GCATC 2 cut(s) 27, 298
MaeI CTAG 1 cut(s) 101
MaeIII GTNAC 3 cut(s) 754, 845, 865
MalI GATC 1 cut(s) 485
MboI GATC 1 cut(s) 483
MboII GAAGA 6 cut(s) 176, 274, 512, 652, 1111, 1114
MflI RGATCY 1 cut(s) 483
MhlI GDGCHC 2 cut(s) 214, 826
MluCI AATT 8 cut(s) 91, 192, 202, 286, 473, 690, 1154, 1189
MmeI TCCRAC 2 cut(s) 896, 951
MnlI CCTC 8 cut(s) 33, 513, 544, 546, 569, 674, 894, 1038
Mph1103I ATGCAT 1 cut(s) 405
MroI TCCGGA 2 cut(s) 901, 1170
MroXI GAANNNNTTC 3 cut(s) 659, 1068, 1227
MseI TTAA 5 cut(s) 191, 612, 936, 1040, 1206
MslI CAYNNNNRTG 4 cut(s) 56, 303, 456, 1113
MspA1I CMGCKG 1 cut(s) 122
MspI CCGG 4 cut(s) 568, 902, 1046, 1171
MspR9I CCNGG 1 cut(s) 569
Mva1269I GAATGC 1 cut(s) 1010
MvnI CGCG 1 cut(s) 1233
MwoI GCNNNNNNNGC 7 cut(s) 122, 424, 564, 578, 587, 950, 1016
NciI CCSGG 1 cut(s) 569
NcoI CCATGG 1 cut(s) 487
NdeI CATATG 1 cut(s) 106
NdeII GATC 1 cut(s) 483
NlaIII CATG 8 cut(s) 188, 403, 407, 483, 491, 515, 748, 1018
NlaIV GGNNCC 1 cut(s) 485
NmuCI GTSAC 2 cut(s) 845, 865
NruI TCGCGA 1 cut(s) 1233
NsiI ATGCAT 1 cut(s) 405
NspI RCATGY 1 cut(s) 748
OliI CACNNNNGTG 1 cut(s) 1113
PceI AGGCCT 1 cut(s) 558
PctI GAATGC 1 cut(s) 1010
PdmI GAANNNNTTC 3 cut(s) 659, 1068, 1227
PfeI GAWTC 1 cut(s) 1075
PflMI CCANNNNNTGG 1 cut(s) 878
PkrI GCNGC 5 cut(s) 124, 127, 336, 429, 1054
PshAI GACNNNNGTC 1 cut(s) 789
PsiI TTATAA 1 cut(s) 81
PspN4I GGNNCC 1 cut(s) 485
PspPI GGNCC 2 cut(s) 570, 881
PstI CTGCAG 1 cut(s) 127
PsuI RGATCY 1 cut(s) 483
PvuII CAGCTG 1 cut(s) 122
RruI TCGCGA 1 cut(s) 1233
RsaI GTAC 4 cut(s) 99, 713, 855, 1033
RsaNI GTAC 4 cut(s) 98, 712, 854, 1032
RseI CAYNNNNRTG 4 cut(s) 56, 303, 456, 1113
SaqAI TTAA 5 cut(s) 191, 612, 936, 1040, 1206
SatI GCNGC 5 cut(s) 123, 126, 335, 428, 1053
Sau3AI GATC 1 cut(s) 483
Sau96I GGNCC 2 cut(s) 570, 881
ScaI AGTACT 1 cut(s) 99
ScrFI CCNGG 1 cut(s) 569
SduI GDGCHC 2 cut(s) 214, 826
SfaNI GCATC 2 cut(s) 27, 298
SfcI CTRYAG 1 cut(s) 123
SinI GGWCC 1 cut(s) 881
SmiMI CAYNNNNRTG 4 cut(s) 56, 303, 456, 1113
SmlI CTYRAG 1 cut(s) 643
SmoI CTYRAG 1 cut(s) 643
Sse9I AATT 8 cut(s) 91, 192, 202, 286, 473, 690, 1154, 1189
SseBI AGGCCT 1 cut(s) 558
SsiI CCGC 3 cut(s) 334, 468, 670
SspI AATATT 2 cut(s) 145, 704
SspMI CTAG 1 cut(s) 101
StuI AGGCCT 1 cut(s) 558
StyD4I CCNGG 1 cut(s) 567
StyI CCWWGG 1 cut(s) 487
TaaI ACNGT 8 cut(s) 49, 170, 224, 716, 752, 788, 839, 1036
TaqI TCGA 4 cut(s) 666, 765, 1060, 1221
TasI AATT 8 cut(s) 91, 192, 202, 286, 473, 690, 1154, 1189
TatI WGTACW 2 cut(s) 97, 711
TauI GCSGC 1 cut(s) 337
TfiI GAWTC 1 cut(s) 1075
Tru1I TTAA 5 cut(s) 191, 612, 936, 1040, 1206
Tru9I TTAA 5 cut(s) 191, 612, 936, 1040, 1206
TscAI CASTG 5 cut(s) 214, 310, 721, 826, 951
TseFI GTSAC 2 cut(s) 845, 865
TseI GCWGC 4 cut(s) 122, 125, 427, 1052
Tsp45I GTSAC 2 cut(s) 845, 865
TspDTI ATGAA 4 cut(s) 357, 420, 468, 1003
TspRI CASTG 5 cut(s) 214, 310, 721, 826, 951
Van91I CCANNNNNTGG 1 cut(s) 878
VneI GTGCAC 1 cut(s) 822
VpaK11BI GGWCC 1 cut(s) 881
XapI RAATTY 4 cut(s) 202, 286, 473, 1189
XceI RCATGY 1 cut(s) 748
XmnI GAANNNNTTC 3 cut(s) 659, 1068, 1227
XspI CTAG 1 cut(s) 101
ZrmI AGTACT 1 cut(s) 99
Zsp2I ATGCAT 1 cut(s) 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.