Rmu_sc0003573.1_g000032

ATP-dependent RNA helicase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003573.1
Physical Location & Seq
Forward (+)
152395 .. 159006
6612 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003573.1_g000032.1.cds

Sequence Viewer

Length: 3975 bp
atggaaaattttgaacagcctatggacttgagctctggaggtggcgatagcaatgcaatcgtcttgccaaataagagaaagaggaaaaggaagggtgctactcaggagggtaagatacttggcacaagaaaaacaccaaagatgaccaaatcccaggaaaggaagttgcaaaagttggaggaggagaaggaaaaagcccttttgctatccaagagcattgatgccttagggaaatataagcttccggagggtgcatattctcttttgcaatcatcaaaagatattggccaggttgaatcaaaaaaggaaaaacgtaggaaggctgtactattctccaaagctggattagaagttccctataccaaccaaccattaaaaaagaaagacggtatggatgcttgtagtgaaagtgaacctgagtcggaaagaactcaaccaaggcaggatcttgacaaaagtggtcaagtacaaccgatggtgatacaaaaggaaatccaaaagaccacatctgtatttttgaactcctcgcaggggctagtctatagcagaggacatgctacaaatggtggtcctgctgatggctcactgtctaaaaatgttatttgcaacgtgtctttgccagaaaacatagcttctagtgtgaatgatgaccatgaaagaacagaggcaatggatagagtaaaagggagcccaaaggtgacttcaagcaggacaggtgaattttctgattttgctgctccaaggtctttgatctctccaactatagtccacgtatcaaggccaattgaagttgaaaacacaaggaaggatcttccaatagtaatgatggaacaggagataatggaggctgttaatgaccattccactgttattatatgtggagaaacagggtgtggtaaaaccactcaggttcctcagtttctttttgaagctggctttggttcaagtcactcttgtcatcgaagcggtattattggtgtcactcaacctcgtcgtgttgcagtccttgcaactgctaagcgagttgcatatgagcttggtctgcatttaggtaaagaggttggctttcaagttaggtttgacaaaaaatttggcgacagttcctccatcaagttcatgacagatggaatattactacgcgagcttcagagtgattttttgttaaagcgatactctataataattcttgatgaagctcatgagcggagcttgagcacggacatacttattggaatgctttctcgtgtaattagtactcgccaggaaatctatgttaagcagcaaagggctgtgctttcaggaaaaactatagatcctggacaacaagtttttccattaaagcttgtgctgatgagtgccaccttgcaagtggaagacttcatttctggtagaaagttgtttcgtgatgtcccgccagttatagaagttcccactagacaatttccagtaaccactcacttctcaaaaagaactgggacggactatgttggccaagcatatcaaaaagtcttggcaattcacaagaggctcccccgtgggggcatacttgtctttgtcactgggcagaaggaagtagagttcttgtgtcaaaaactacgtagagcttcaacagaactggtcatgaaaacatctggagggaaaattgggtgtaatgccactgatgcttctaataaagatgttgaactactagatatgaacgagattaatgaagcatttgaggttaaagaaaatttagccgaccatcaaattgacaggtttagctctgttgatgaagttctgggtaatatatatgaggatgaattggatgcttcgtatgattcagacacagacagtgaagtggaaattattgatgatgatgggggtttattgttacacaatccccccgaaattgatggtgttggtgcagatgttttaggagagacggggagcattgcttcactgaaagctgcttttgaagctttggccggtaaaactgaactgtactctagttctgatgggaaacagccaatttcagttactgtagatgcttactttaataaatcccatcctagtcttgggaaaaagagtgaggttgatattgataattccccaggtggcttgcatgttctccctctttatgccatgttgcctgcggcttctcagcttcgcgtatttgaagaagtcaaggaaggagatcgactagttgttgtagccacaaatgtggctgagacctctttaaccatacctggggtaaagtatgtcgtcgatactggcagagtaaaagtgaaaaactacaattcctcaaatggtatggaaacatataacataaagtggataagtaaggcatcagctgctcaacgtaaaggaagagctggaagaacgggacctgggcactgttatcgtctttattcttctgcagtatataataatgaatttcccgacttttctccggctgaaatattgaaagtccctattgatggcgttgtccttctcatgaaatctatgaatattgaaaaggtatccaattttccatttccaactccacctgatgttgctgctttgggtgaagcagaacgttgcttgaatgcccttgaagcacttgacagcaatggcagattaacacctttagggaaggccatggctcgttaccccatgagtcctcgccactccaggatgctccttacggttattcaaatcatgtacaatgagaaaagttattcccgcagtaaattaattctagcatatgcagttgcagcagcggctgctttgagtttgtcaaatccttttgtgaggcggtttgaaaatgactcaaataaccatgacttggatcaggatgaaaatctcagcgcttctgtgaacaataaggtgttagagaagcaagaaaagttaagaaggaagaaactaaaagaaactgtaaaggtgtttcgtgaaaaatttgctaatcctgtcagtgatgctctgtctgtagcttatgctttgcagtgctatgaactttctaggagcccactaaagttctgcaatgataatgccctacacccaaaaacgatggaggaaatgtccaagctgagaaagcaactgctccaacttgtatttagtcaatgtggtgtatctggcagtgagaaggatttttcatgcatttttggaagtttggaagatgttgaacatgtttggagggcttcccatgataagagtcctctttcactgtatgaggaagacctcttaggccaagctatctgtgctggttgggcagatagggtggcgaaacgtattagaggaacctcagggtcatctgaagtagatagaaaagttcatgcagtgcggtatcaagcttgcatggttgaagagactgtgttcctccaccgttggtcatctgtttctaatgctgccccagagtttttggtgtacactgagctaatacagacaagacgtccatacatgcatggtgttactagtgtaaaaccagaatggcttgtaaagtatgctccgtctttatgcactttctctgcagcttcatccgatgccaagcagtattatgagcctgtgactgaccaagtgttacatgatgtcattccagcctttggtcctcatctatggaagcttcccccacatagtttgcctattactaactatgtctctcgagtggcagtttttgcttatgctttgcttgaaggccaggttttgccatgcttgagatgtgctcgtgagtttatgaaggcacctccagctagtattttacggccagaggcagaagggcaaagacgggctggaaatttgttagctaagttaaacataaaaaagatagacagctgtgctatgttaagagagatctggaaggagaatcctaatgaattgcattcagaaatccaggattggtttaaggagagtttccgcaagaatttggcagctctatggtcagacatgcttagggaagttcttttagagccgcaagaacggttttcaaagagagagatcagaagaattgaagttaaaagataa

Protein Analysis

1324

Amino Acids

147.47

Weight (kDa)

8.4

Isoelectric Point (pI)

48.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000599)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33390 AT1G33390
fragaria_vesca FvH4_3g40090 FvH4_3g40090 FvH4_3g40090 FvH4_6g48600
malus_domestica MD04G1241500.v1.1 MD05G1017800.v1.1
prunus_persica Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1
pyrus_communis pycom04g21310 pycom05g01000 pycom05g01050 pycom11g20470
rosa_chinensis RchiOBHm_Chr2g0168421 RchiOBHm_Chr2g0168431 RchiOBHm_Chr2g0168441 RchiOBHm_Chr2g0168451 RchiOBHm_Chr2g0168461 RchiOBHm_Chr4g0407811 RchiOBHm_Chr7g0220161 RchiOBHm_Chr7g0220171 RchiOBHm_Chr7g0220481
rosa_laevigata RLG00000002253 RLG00000008696 RLG00000021781
rosa_multiflora Rmu_co8232135.1_g000001 Rmu_sc0000966.1_g000007 Rmu_sc0003573.1_g000032 Rmu_sc0006361.1_g000012 Rmu_sc0006361.1_g000013 Rmu_sc0012607.1_g000001 Rmu_sc0016657.1_g000009
rosa_roxburghii Rroxscaffold_2G00083000 Rroxscaffold_2G00083010 Rroxscaffold_3G00239750 Rroxscaffold_5G00352370
rosa_rugosa Rorug02G0533800 Rorug02G0533800 Rorug04G0081400 Rorug07G0189900 Rorug07G0190000
rosa_samantha Rh2AG603500 Rh2AG603700 Rh2BG616600 Rh2BG616700 Rh2BG616800 Rh2CG584500 Rh2CG584600 Rh2CG584700 Rh2DG627100 Rh2DG627200 Rh4AG146500 Rh4BG144000 Rh4CG153000 Rh4DG140500 Rh7AG332900 Rh7BG324300 Rh7BG324400 Rh7BG324500 Rh7CG350400 Rh7DG329000
rosa_wichuraiana Rw0G022710 Rw2G050050 Rw4G011990 Rw7G028060 Rw7G028070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 3409
AccB1I GGYRCC 1 cut(s) 3694
AccB7I CCANNNNNTGG 2 cut(s) 2803, 3557
AccBSI CCGCTC 1 cut(s) 1204
AccII CGCG 2 cut(s) 1140, 2148
AccIII TCCGGA 1 cut(s) 244
AclI AACGTT 1 cut(s) 2554
AclWI GGATC 4 cut(s) 453, 816, 1307, 2814
AcoI YGGCCR 4 cut(s) 286, 1489, 1962, 3716
AcsI RAATTY 8 cut(s) 7, 719, 1088, 1729, 2411, 2912, 3748, 3874
AcuI CTGAAG 2 cut(s) 1130, 3291
AcyI GRCGYC 1 cut(s) 3406
AfaI GTAC 6 cut(s) 327, 468, 1255, 1982, 2681, 3383
AfeI AGCGCT 1 cut(s) 2827
AflIII ACRYGT 2 cut(s) 609, 3142
AhdI GACNNNNNGTC 1 cut(s) 3405
AhlI ACTAGT 2 cut(s) 2179, 3428
AjuI GAANNNNNNNTTGG 4 cut(s) 685, 717, 921, 953
AleI CACNNNNGTG 1 cut(s) 2198
AloI GAACNNNNNNTCC 4 cut(s) 336, 368, 1562, 1594
Alw21I GWGCWC 3 cut(s) 35, 1217, 3679
Alw26I GTCTC 4 cut(s) 1913, 2201, 3317, 3616
AlwI GGATC 4 cut(s) 453, 816, 1307, 2814
AlwNI CAGNNNCTG 2 cut(s) 2018, 2741
Ama87I CYCGRG 1 cut(s) 3615
Aor13HI TCCGGA 1 cut(s) 244
Aor51HI AGCGCT 1 cut(s) 2827
AoxI GGCC 8 cut(s) 286, 779, 1489, 1962, 2613, 3202, 3649, 3716
ApoI RAATTY 8 cut(s) 7, 719, 1088, 1729, 2411, 2912, 3748, 3874
ArsI GACNNNNNNTTYG 2 cut(s) 1073, 1105
AseI ATTAAT 2 cut(s) 1704, 2711
Asp700I GAANNNNTTC 1 cut(s) 1237
AspLEI GCGC 1 cut(s) 2828
AspS9I GGNCC 3 cut(s) 569, 2363, 3560
AsuHPI GGTGA 4 cut(s) 490, 709, 728, 2555
AvaI CYCGRG 1 cut(s) 3615
AvaII GGWCC 3 cut(s) 569, 2363, 3560
AxyI CCTNAGG 2 cut(s) 226, 3259
BaeGI GKGCMC 1 cut(s) 2373
BalI TGGCCA 2 cut(s) 288, 1491
BanI GGYRCC 1 cut(s) 3694
BanII GRGCYC 3 cut(s) 35, 692, 2984
BauI CACGAG 2 cut(s) 1242, 3678
BbsI GAAGAC 2 cut(s) 1380, 3198
Bbv12I GWGCWC 3 cut(s) 35, 1217, 3679
BceAI ACGGC 1 cut(s) 3731
BcgI CGANNNNNNTGC 6 cut(s) 35, 40, 69, 74, 2360, 2394
BciVI GTATCC 1 cut(s) 2509
BcoDI GTCTC 4 cut(s) 1913, 2201, 3317, 3616
BcuI ACTAGT 2 cut(s) 2179, 3428
BfmI CTRYAG 7 cut(s) 541, 762, 1308, 2019, 2394, 2943, 3483
BfoI RGCGCY 1 cut(s) 2829
BfuI GTATCC 1 cut(s) 2509
BglII AGATCT 1 cut(s) 3804
BlpI GCTNAGC 1 cut(s) 1017
BmcAI AGTACT 1 cut(s) 1255
Bme18I GGWCC 3 cut(s) 569, 2363, 3560
BmeRI GACNNNNNGTC 1 cut(s) 3405
BmeT110I CYCGRG 1 cut(s) 3615
BmgT120I GGNCC 3 cut(s) 569, 2363, 3560
BmiI GGNNCC 7 cut(s) 689, 912, 1529, 2364, 2981, 3256, 3696
BmrI ACTGGG 2 cut(s) 1482, 1569
BmsI GCATC 9 cut(s) 211, 385, 1651, 1795, 2014, 2333, 2643, 2923, 3487
BmuI ACTGGG 2 cut(s) 1482, 1569
BpiI GAAGAC 2 cut(s) 1380, 3198
BplI GAGNNNNNCTC 2 cut(s) 3661, 3693
BpmI CTGGAG 4 cut(s) 57, 1653, 2632, 3684
Bpu10I CCTNAGC 1 cut(s) 3902
Bpu1102I GCTNAGC 1 cut(s) 1017
BpuEI CTTGAG 3 cut(s) 49, 1231, 3688
BsaAI YACGTR 2 cut(s) 772, 1598
BsaBI GATNNNNATC 1 cut(s) 2817
BsaHI GRCGYC 1 cut(s) 3406
BsaI GGTCTC 1 cut(s) 2201
BsaJI CCNNGG 8 cut(s) 153, 437, 740, 1534, 2089, 2225, 2366, 2616
BsaWI WCCGGW 1 cut(s) 244
BsaXI ACNNNNNCTCC 4 cut(s) 1088, 1118, 3020, 3050
Bse118I RCCGGY 1 cut(s) 1964
Bse1I ACTGG 6 cut(s) 1415, 1445, 1477, 1564, 1620, 2254
Bse21I CCTNAGG 2 cut(s) 226, 3259
Bse3DI GCAATG 5 cut(s) 58, 675, 1929, 2593, 3004
Bse8I GATNNNNATC 1 cut(s) 2817
BseAI TCCGGA 1 cut(s) 244
BseDI CCNNGG 8 cut(s) 153, 437, 740, 1534, 2089, 2225, 2366, 2616
BseGI GGATG 7 cut(s) 400, 1801, 1810, 2044, 2658, 2818, 3491
BseJI GATNNNNATC 1 cut(s) 2817
BseMI GCAATG 5 cut(s) 58, 675, 1929, 2593, 3004
BseNI ACTGG 6 cut(s) 1415, 1445, 1477, 1564, 1620, 2254
BseRI GAGGAG 3 cut(s) 194, 197, 514
BseSI GKGCMC 1 cut(s) 2373
BsgI GTGCAG 1 cut(s) 1923
Bsh1236I CGCG 2 cut(s) 1140, 2148
BshFI GGCC 8 cut(s) 288, 781, 1491, 1964, 2615, 3204, 3651, 3718
BshNI GGYRCC 1 cut(s) 3694
BsiHKAI GWGCWC 3 cut(s) 35, 1217, 3679
BsiHKCI CYCGRG 1 cut(s) 3615
BsiSI CCGG 3 cut(s) 245, 1965, 2429
BslFI GGGAC 4 cut(s) 1394, 1489, 2376, 2432
BsmAI GTCTC 4 cut(s) 1913, 2201, 3317, 3616
BsmBI CGTCTC 1 cut(s) 1913
BsmFI GGGAC 4 cut(s) 1394, 1489, 2376, 2432
BsmI GAATGC 3 cut(s) 1239, 2569, 3832
BsnI GGCC 8 cut(s) 288, 781, 1491, 1964, 2615, 3204, 3651, 3718
Bso31I GGTCTC 1 cut(s) 2201
BsoBI CYCGRG 1 cut(s) 3615
Bsp1286I GDGCHC 6 cut(s) 35, 692, 1217, 2373, 2984, 3679
Bsp13I TCCGGA 1 cut(s) 244
Bsp1407I TGTACA 2 cut(s) 2679, 3381
Bsp143I GATC 8 cut(s) 445, 750, 808, 1312, 2173, 2806, 3804, 3948
Bsp1720I GCTNAGC 1 cut(s) 1017
Bsp19I CCATGG 1 cut(s) 2616
BspANI GGCC 8 cut(s) 288, 781, 1491, 1964, 2615, 3204, 3651, 3718
BspEI TCCGGA 1 cut(s) 244
BspFNI CGCG 2 cut(s) 1140, 2148
BspHI TCATGA 4 cut(s) 1116, 1198, 1620, 2472
BspLI GGNNCC 7 cut(s) 689, 912, 1529, 2364, 2981, 3256, 3696
BspMAI CTGCAG 2 cut(s) 2398, 3487
BspPI GGATC 4 cut(s) 453, 816, 1307, 2814
BspQI GCTCTTC 1 cut(s) 2341
BspT107I GGYRCC 1 cut(s) 3694
BspTNI GGTCTC 1 cut(s) 2201
BsrBI CCGCTC 1 cut(s) 1204
BsrDI GCAATG 5 cut(s) 58, 675, 1929, 2593, 3004
BsrFI RCCGGY 1 cut(s) 1964
BsrGI TGTACA 2 cut(s) 2679, 3381
BsrI ACTGG 6 cut(s) 1415, 1445, 1477, 1564, 1620, 2254
BssAI RCCGGY 1 cut(s) 1964
BssECI CCNNGG 8 cut(s) 153, 437, 740, 1534, 2089, 2225, 2366, 2616
BssMI GATC 8 cut(s) 445, 750, 808, 1312, 2173, 2806, 3804, 3948
BssNI GRCGYC 1 cut(s) 3406
BssSI CACGAG 2 cut(s) 1242, 3678
BssT1I CCWWGG 3 cut(s) 437, 740, 2616
Bst2BI CACGAG 2 cut(s) 1242, 3678
Bst6I CTCTTC 2 cut(s) 2341, 3315
BstACI GRCGYC 1 cut(s) 3406
BstAPI GCANNNNNTGC 4 cut(s) 1007, 2330, 2741, 3629
BstAUI TGTACA 2 cut(s) 2679, 3381
BstBAI YACGTR 2 cut(s) 772, 1598
BstC8I GCNNGC 5 cut(s) 934, 1142, 2099, 2130, 3310
BstDSI CCRYGG 2 cut(s) 1534, 2616
BstF5I GGATG 7 cut(s) 400, 1801, 1810, 2044, 2658, 2818, 3491
BstFNI CGCG 2 cut(s) 1140, 2148
BstH2I RGCGCY 1 cut(s) 2829
BstHHI GCGC 1 cut(s) 2828
BstKTI GATC 8 cut(s) 448, 753, 811, 1315, 2176, 2809, 3807, 3951
BstMAI GTCTC 4 cut(s) 1913, 2201, 3317, 3616
BstMBI GATC 8 cut(s) 445, 750, 808, 1312, 2173, 2806, 3804, 3948
BstNSI RCATGY 5 cut(s) 557, 2105, 3146, 3418, 3901
BstSFI CTRYAG 7 cut(s) 541, 762, 1308, 2019, 2394, 2943, 3483
BstSLI GKGCMC 1 cut(s) 2373
BstSNI TACGTA 1 cut(s) 1598
BstUI CGCG 2 cut(s) 1140, 2148
BstV2I GAAGAC 2 cut(s) 1380, 3198
BstX2I RGATCY 4 cut(s) 445, 808, 1312, 3804
BstXI CCANNNNNNTGG 1 cut(s) 2200
BstYI RGATCY 4 cut(s) 445, 808, 1312, 3804
Bsu36I CCTNAGG 2 cut(s) 226, 3259
BsuI GTATCC 1 cut(s) 2509
BsuRI GGCC 8 cut(s) 288, 781, 1491, 1964, 2615, 3204, 3651, 3718
BtgI CCRYGG 2 cut(s) 1534, 2616
BtsCI GGATG 7 cut(s) 400, 1801, 1810, 2044, 2658, 2818, 3491
BtsI GCAGTG 3 cut(s) 2966, 3100, 3300
Cac8I GCNNGC 5 cut(s) 934, 1142, 2099, 2130, 3310
CaiI CAGNNNCTG 2 cut(s) 2018, 2741
CciI TCATGA 4 cut(s) 1116, 1198, 1620, 2472
CfoI GCGC 1 cut(s) 2828
Cfr10I RCCGGY 1 cut(s) 1964
Cfr13I GGNCC 3 cut(s) 569, 2363, 3560
Csp6I GTAC 6 cut(s) 326, 467, 1254, 1981, 2680, 3382
CspCI CAANNNNNGTGG 2 cut(s) 3573, 3608
CviQI GTAC 6 cut(s) 326, 467, 1254, 1981, 2680, 3382
DpnI GATC 8 cut(s) 447, 752, 810, 1314, 2175, 2808, 3806, 3950
DpnII GATC 8 cut(s) 445, 750, 808, 1312, 2173, 2806, 3804, 3948
DriI GACNNNNNGTC 1 cut(s) 3405
EaeI YGGCCR 4 cut(s) 286, 1489, 1962, 3716
Eam1104I CTCTTC 2 cut(s) 2341, 3315
Eam1105I GACNNNNNGTC 1 cut(s) 3405
EarI CTCTTC 2 cut(s) 2341, 3315
Ecl136II GAGCTC 1 cut(s) 33
Eco105I TACGTA 1 cut(s) 1598
Eco130I CCWWGG 3 cut(s) 437, 740, 2616
Eco24I GRGCYC 3 cut(s) 35, 692, 2984
Eco31I GGTCTC 1 cut(s) 2201
Eco47I GGWCC 3 cut(s) 569, 2363, 3560
Eco47III AGCGCT 1 cut(s) 2827
Eco53kI GAGCTC 1 cut(s) 33
Eco57I CTGAAG 2 cut(s) 1130, 3291
Eco81I CCTNAGG 2 cut(s) 226, 3259
Eco88I CYCGRG 1 cut(s) 3615
EcoICRI GAGCTC 1 cut(s) 33
EcoO109I RGGNCCY 1 cut(s) 2363
EcoT14I CCWWGG 3 cut(s) 437, 740, 2616
EcoT22I ATGCAT 2 cut(s) 3116, 3420
EcoT38I GRGCYC 3 cut(s) 35, 692, 2984
ErhI CCWWGG 3 cut(s) 437, 740, 2616
Esp3I CGTCTC 1 cut(s) 1913
FalI AAGNNNNNCTT 2 cut(s) 937, 969
FaqI GGGAC 4 cut(s) 1394, 1489, 2376, 2432
FauI CCCGC 2 cut(s) 1419, 2708
FauNDI CATATG 2 cut(s) 1030, 2722
FokI GGATG 7 cut(s) 407, 1808, 1817, 2031, 2665, 2825, 3478
FriOI GRGCYC 3 cut(s) 35, 692, 2984
GlaI GCGC 1 cut(s) 2827
GsuI CTGGAG 4 cut(s) 57, 1653, 2632, 3684
HaeII RGCGCY 1 cut(s) 2829
HaeIII GGCC 8 cut(s) 288, 781, 1491, 1964, 2615, 3204, 3651, 3718
HapII CCGG 3 cut(s) 245, 1965, 2429
HhaI GCGC 1 cut(s) 2828
Hin1I GRCGYC 1 cut(s) 3406
Hin6I GCGC 1 cut(s) 2826
HinP1I GCGC 1 cut(s) 2826
HindIII AAGCTT 5 cut(s) 239, 1340, 1956, 3306, 3575
HinfI GANTC 7 cut(s) 296, 419, 1817, 2635, 2786, 3169, 3817
HpaII CCGG 3 cut(s) 245, 1965, 2429
HphI GGTGA 4 cut(s) 490, 709, 728, 2555
Hpy166II GTNNAC 5 cut(s) 413, 769, 2836, 3382, 3384
Hpy8I GTNNAC 5 cut(s) 413, 769, 2836, 3382, 3384
Hpy99I CGWCG 2 cut(s) 996, 2246
HpyCH4IV ACGT 8 cut(s) 313, 609, 771, 1597, 2338, 2554, 3244, 3406
HpySE526I ACGT 8 cut(s) 313, 609, 771, 1597, 2338, 2554, 3244, 3406
Hsp92I GRCGYC 1 cut(s) 3406
HspAI GCGC 1 cut(s) 2826
Kpn2I TCCGGA 1 cut(s) 244
Kzo9I GATC 8 cut(s) 445, 750, 808, 1312, 2173, 2806, 3804, 3948
LguI GCTCTTC 1 cut(s) 2341
LmnI GCTCC 9 cut(s) 687, 742, 1206, 1533, 1926, 2661, 2979, 3063, 3466
LweI GCATC 9 cut(s) 211, 385, 1651, 1795, 2014, 2333, 2643, 2923, 3487
MaeII ACGT 8 cut(s) 313, 609, 771, 1597, 2338, 2554, 3244, 3406
MalI GATC 8 cut(s) 447, 752, 810, 1314, 2175, 2808, 3806, 3950
MbiI CCGCTC 1 cut(s) 1204
MboI GATC 8 cut(s) 445, 750, 808, 1312, 2173, 2806, 3804, 3948
MfeI CAATTG 1 cut(s) 783
MflI RGATCY 4 cut(s) 445, 808, 1312, 3804
MhlI GDGCHC 6 cut(s) 35, 692, 1217, 2373, 2984, 3679
MlsI TGGCCA 2 cut(s) 288, 1491
MluNI TGGCCA 2 cut(s) 288, 1491
MlyI GAGTC 4 cut(s) 428, 2644, 2780, 3178
MmeI TCCRAC 5 cut(s) 156, 402, 782, 2540, 3085
Mox20I TGGCCA 2 cut(s) 288, 1491
Mph1103I ATGCAT 2 cut(s) 3116, 3420
MroI TCCGGA 1 cut(s) 244
MroXI GAANNNNTTC 1 cut(s) 1237
MscI TGGCCA 2 cut(s) 288, 1491
MslI CAYNNNNRTG 1 cut(s) 2198
Msp20I TGGCCA 2 cut(s) 288, 1491
MspA1I CMGCKG 3 cut(s) 2330, 2738, 3786
MspI CCGG 3 cut(s) 245, 1965, 2429
MunI CAATTG 1 cut(s) 783
Mva1269I GAATGC 3 cut(s) 1239, 2569, 3832
MvnI CGCG 2 cut(s) 1140, 2148
NcoI CCATGG 1 cut(s) 2616
NdeI CATATG 2 cut(s) 1030, 2722
NdeII GATC 8 cut(s) 445, 750, 808, 1312, 2173, 2806, 3804, 3948
NlaIV GGNNCC 7 cut(s) 689, 912, 1529, 2364, 2981, 3256, 3696
NmuCI GTSAC 5 cut(s) 697, 947, 979, 1555, 3520
NsiI ATGCAT 2 cut(s) 3116, 3420
NspI RCATGY 5 cut(s) 557, 2105, 3146, 3418, 3901
OliI CACNNNNGTG 1 cut(s) 2198
PaeR7I CTCGAG 1 cut(s) 3615
PagI TCATGA 4 cut(s) 1116, 1198, 1620, 2472
PciI ACATGT 1 cut(s) 3142
PciSI GCTCTTC 1 cut(s) 2341
PctI GAATGC 3 cut(s) 1239, 2569, 3832
PdmI GAANNNNTTC 1 cut(s) 1237
PfeI GAWTC 3 cut(s) 296, 1817, 3817
PflMI CCANNNNNTGG 2 cut(s) 2803, 3557
PfoI TCCNGGA 3 cut(s) 1315, 2648, 3843
PleI GAGTC 4 cut(s) 427, 2643, 2780, 3177
PpsI GAGTC 4 cut(s) 427, 2643, 2780, 3177
Ppu21I YACGTR 2 cut(s) 772, 1598
PpuMI RGGWCCY 1 cut(s) 2363
PscI ACATGT 1 cut(s) 3142
PshBI ATTAAT 2 cut(s) 1704, 2711
Psp124BI GAGCTC 1 cut(s) 35
Psp1406I AACGTT 1 cut(s) 2554
Psp5II RGGWCCY 1 cut(s) 2363
PspN4I GGNNCC 7 cut(s) 689, 912, 1529, 2364, 2981, 3256, 3696
PspPI GGNCC 3 cut(s) 569, 2363, 3560
PspPPI RGGWCCY 1 cut(s) 2363
PstI CTGCAG 2 cut(s) 2398, 3487
PstNI CAGNNNCTG 2 cut(s) 2018, 2741
PsuI RGATCY 4 cut(s) 445, 808, 1312, 3804
PvuII CAGCTG 2 cut(s) 2330, 3786
RsaI GTAC 6 cut(s) 327, 468, 1255, 1982, 2681, 3383
RsaNI GTAC 6 cut(s) 326, 467, 1254, 1981, 2680, 3382
RseI CAYNNNNRTG 1 cut(s) 2198
SacI GAGCTC 1 cut(s) 35
SapI GCTCTTC 1 cut(s) 2341
Sau3AI GATC 8 cut(s) 445, 750, 808, 1312, 2173, 2806, 3804, 3948
Sau96I GGNCC 3 cut(s) 569, 2363, 3560
ScaI AGTACT 1 cut(s) 1255
SchI GAGTC 4 cut(s) 428, 2644, 2780, 3178
SduI GDGCHC 6 cut(s) 35, 692, 1217, 2373, 2984, 3679
SfaNI GCATC 9 cut(s) 211, 385, 1651, 1795, 2014, 2333, 2643, 2923, 3487
SfcI CTRYAG 7 cut(s) 541, 762, 1308, 2019, 2394, 2943, 3483
Sfr274I CTCGAG 1 cut(s) 3615
SinI GGWCC 3 cut(s) 569, 2363, 3560
SlaI CTCGAG 1 cut(s) 3615
SmiMI CAYNNNNRTG 1 cut(s) 2198
SmlI CTYRAG 4 cut(s) 28, 1210, 3615, 3667
SmoI CTYRAG 4 cut(s) 28, 1210, 3615, 3667
SnaBI TACGTA 1 cut(s) 1598
SpeI ACTAGT 2 cut(s) 2179, 3428
SspI AATATT 3 cut(s) 1131, 2439, 2488
SstI GAGCTC 1 cut(s) 35
StyI CCWWGG 3 cut(s) 437, 740, 2616
TaiI ACGT 8 cut(s) 316, 612, 774, 1600, 2341, 2557, 3247, 3409
TaqI TCGA 4 cut(s) 961, 2176, 2244, 3616
TatI WGTACW 6 cut(s) 325, 466, 1253, 1980, 2679, 3381
TauI GCSGC 3 cut(s) 2135, 2741, 3925
TfiI GAWTC 3 cut(s) 296, 1817, 3817
TseFI GTSAC 5 cut(s) 697, 947, 979, 1555, 3520
Tsp45I GTSAC 5 cut(s) 697, 947, 979, 1555, 3520
TspGWI ACGGA 3 cut(s) 1232, 1493, 3453
Van91I CCANNNNNTGG 2 cut(s) 2803, 3557
VpaK11BI GGWCC 3 cut(s) 569, 2363, 3560
VspI ATTAAT 2 cut(s) 1704, 2711
XapI RAATTY 8 cut(s) 7, 719, 1088, 1729, 2411, 2912, 3748, 3874
XceI RCATGY 5 cut(s) 557, 2105, 3146, 3418, 3901
XcmI CCANNNNNNNNNTGG 2 cut(s) 1366, 2051
XhoI CTCGAG 1 cut(s) 3615
XmnI GAANNNNTTC 1 cut(s) 1237
ZraI GACGTC 1 cut(s) 3407
ZrmI AGTACT 1 cut(s) 1255
Zsp2I ATGCAT 2 cut(s) 3116, 3420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.