Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000599

Physical Location & Seq

Genomic Coordinates Reverse (-)

85630550 .. 85633589

Gene Structure 3040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG627100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2538 bp

ATGTCATGGCAAAAATTATATGAAGATCAGCAGAAGAAATTGCGTCAAGGACTATCAATAGTTCGTGAGAAAAGGATTTTTCCATTGAAGCTTGTGCTCATGAGTGCTACCAATCCTACCATACCAGTGGAAGACTTTAGAAAGATGTTTCCAGATCCCCCACAAGTTATAAATGTTTCGTCCAGACAATTTAAAGTAAGCACTCAGTTCTCAGTGACAACTGAAGGTCATTATATTAATGAAGCATACAAAAAAGTCTTGGAAATTCATAAGACGCTGCCTCATGGAGGCATACTTGTCTTTCTCACTGGGTATCGGGAAATAGAGGAATTGTGTCAAAAGCTACGCAGACATTCAAGGAAACTTATTAAAACATCAAATGGAAGTTGTGCCACTGAAGGTCGTGAAATAAACTCTGTTGAGGAAATAAATATGAAGAAAGAAATGGAAGCATTTGACAGTAATGGTAATTCAGCCTTCCATCAAACTGATGGATTTAGCTATAATGATGAAGATCATTGTGAGATAGACAAGTATGAGTTGGATTCTATATATGATGCAGAAATAGAGAGTGAGCTAGAAACTATTGGTGATGATAGGGATTCATTATGCGAAGATAAGCCAGAAGTTGATGGTAATGTTGCACAAGCTTTAGGAGAGAATCTGACCATTGCATCACTGAAGGCCTCTTTTGAAGCTTTGGCCAGAAAATCTTCTTCAGACTCTACTTCAGCTTGCAGAGAACCTATCTCATGTACTCTGGACTCTTGCTCTAACCAATCCAATCATAGTTGTAGCTTGGGGACAAAAGGTGGGGTTGAATACCCTGGGAAGCTAGGTTCACTGCGTGTTCTTCCTCTTTATTCCATGCTACCTGCAGCAGCTCAGCGTCATGTATTTGAAAAAGTCAAGGAGGGGGAACGACTTGTTGTTGTGGCGACTAATGTGGCTGAAACCTCTTTAACTATACCTGGGATAAAGTATGTAGTCGACACTGGAAAAGTGAAAGTGAAGGACTACAATTTCTCAAATGGCATGGAAACATATAAAGTACAGTGGATTAGTAAGGCATCAGCTATTCAACGCGAAGGAAAAGCTGGAAGAACAGGGCCTGGCCACTGTTTCCGCTTGTATTCTTCTTCAGTATATGACAATGAGTTTCTTGACTGTTCCGAAGCTGAAATATCCAAAGTCCCTGTTGATGGTGTTCTCCTTCTTATGAAGGCTATGAAAATACCGGTATCCAAATTTCAGTTTCCTACTCCTCCAAATGGTGATACTATTGATGAAGCAGAGGATCGTTTGAAGCTCCTCAAAGCACTTGATAGCAATGGAGAGGTGACACCTTTAGGGAAGGCCATGGCTTATTACCCCATAAGTCCTCCCCAATCTAAGATGCTCCTTACGGTCATTGAAATCCTGAATGTGAAGCAAAGTTATTCCCGAGCTAATTTAGTGCAAGCATATGCAGTTGCAGCAGCTGCAGCTTTGAGTGTGTCTAATCCTTTTGACAGTCAATTTGAAGATAGTCACATAAAAAACTTTGACTCAAGTCAGAATGGAAGTTATAGTGCTCCAGTTAACAGCGAGTATATGGATCAGCAAGAGATACTGATTAGCAGGAAGAAACTGAAAGTGTCTTCTGAAAATTTTCATAGTAGCAGCAGTGATGCTCTGTCAAGAGCTTATGCTTTGCGAGGCTATGAACTTTCCAAGAGCCAAATGGGTTTCTGCAAGGAAAATGCTCTACACCTGGAAACCATGGAGGAAATATCCAAGCTGAGAAAGCAGCTCCTCAAACTTGTCTTTAATCCAAATGGTGTTTCTGGAGGTGTGAAGGAATTTTTGTGGATCTATGGTAGTCAGAAAGATGTTGAAACTGTTTGGAGGGATGATGAGAAGCTACTCTCAGTCAATGAGGAAGAGCTCTTACGCCAAGCTATCTGTGCTGGTTGGATAGATAGGGTTGCCAAACGCATTGAAGGAAGTGCATATCAGGCCTGCATGGTCAAAGAGACTGTGTTCCTCCACTGGCAGTCACCTGTTTCTAAAATTGCTCCTGAGTTTTTGGTGTACAGTGAGTTGATCCAGACAAAGAAACCTTTCATGTACGGCATTACTTGTGTCAGTCCAGATTGGCTCGTCAAGTATGGTCTGCTTGCTATGTATGATCAGCGCTTGTGCACTTTTTCAAAAGAAACTCCGCCTTACTATGACCGTCAAACTGACAAACTATTATACAGTGTCACTCCAACCTTTGGTCGTGTTCAACGGTGGGAGCTTCCACAACATTCTTTGCCAATTAGTAATTTTGATCATACAGGCGCAGTTCAAGCTTTTGCTTTTGCTTTGCTCGATGGCAAGGTTTTGCATTGCCATCGACCTCTGTGTGAGTCCATGGCAGAACGTCCTCACACTGTTTTAAGGCCAGAGGCAGCAGGTCGAGAACGGGTTCATAATCTCTTTGGTGAAGCTGGGGAAGAAAAAGATAGTCAGCCGTGCTATGTTGATAGAGGTGTGGAAGGAAAATCCCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

845

Amino Acids

94.85

Weight (kDa)

6.0

Isoelectric Point (pI)

44.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	281 - 370	1.9e-09	Helicase conserved C-terminal domain
WHD_HA2	PF04408	431 - 459	2.4e-07	Helicase associated domain (HA2), winged-helix
OB_NTP_bind	PF07717	644 - 717	1.1e-17	Oligonucleotide/oligosaccharide-binding (OB)-fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33390 AT1G33390
fragaria_vesca	FvH4_3g40090 FvH4_3g40090 FvH4_3g40090 FvH4_6g48600
malus_domestica	MD04G1241500.v1.1 MD05G1017800.v1.1
prunus_persica	Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1
pyrus_communis	pycom04g21310 pycom05g01000 pycom05g01050 pycom11g20470
rosa_chinensis	RchiOBHm_Chr2g0168421 RchiOBHm_Chr2g0168431 RchiOBHm_Chr2g0168441 RchiOBHm_Chr2g0168451 RchiOBHm_Chr2g0168461 RchiOBHm_Chr4g0407811 RchiOBHm_Chr7g0220161 RchiOBHm_Chr7g0220171 RchiOBHm_Chr7g0220481
rosa_laevigata	RLG00000002253 RLG00000008696 RLG00000021781
rosa_multiflora	Rmu_co8232135.1_g000001 Rmu_sc0000966.1_g000007 Rmu_sc0003573.1_g000032 Rmu_sc0006361.1_g000012 Rmu_sc0006361.1_g000013 Rmu_sc0012607.1_g000001 Rmu_sc0016657.1_g000009
rosa_roxburghii	Rroxscaffold_2G00083000 Rroxscaffold_2G00083010 Rroxscaffold_3G00239750 Rroxscaffold_5G00352370
rosa_rugosa	Rorug02G0533800 Rorug02G0533800 Rorug04G0081400 Rorug07G0189900 Rorug07G0190000
rosa_samantha	Rh2AG603500 Rh2AG603700 Rh2BG616600 Rh2BG616700 Rh2BG616800 Rh2CG584500 Rh2CG584600 Rh2CG584700 Rh2DG627100 Rh2DG627200 Rh4AG146500 Rh4BG144000 Rh4CG153000 Rh4DG140500 Rh7AG332900 Rh7BG324300 Rh7BG324400 Rh7BG324500 Rh7CG350400 Rh7DG329000
rosa_wichuraiana	Rw0G022710 Rw2G050050 Rw4G011990 Rw7G028060 Rw7G028070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	170
Acc36I	ACCTGC	2 cut(s)	883, 2429
AccB7I	CCANNNNNTGG	1 cut(s)	2258
AccI	GTMKAC	1 cut(s)	990
AccII	CGCG	1 cut(s)	1086
AciI	CCGC	2 cut(s)	1126, 2204
AclWI	GGATC	5 cut(s)	149, 1305, 1605, 1859, 2080
AcoI	YGGCCR	2 cut(s)	702, 1114
AcsI	RAATTY	4 cut(s)	264, 1247, 1648, 1841
AcuI	CTGAAG	6 cut(s)	243, 417, 701, 702, 714, 1125
AdeI	CACNNNGTG	1 cut(s)	848
AfaI	GTAC	4 cut(s)	757, 1053, 2075, 2111
AfeI	AGCGCT	1 cut(s)	2177
AfiI	CCNNNNNNNGG	4 cut(s)	287, 1202, 1271, 2258
AgeI	ACCGGT	1 cut(s)	1237
AjnI	CCWGG	4 cut(s)	826, 970, 1111, 1752
AjuI	GAANNNNNNNTTGG	2 cut(s)	1807, 1839
AloI	GAACNNNNNNTCC	2 cut(s)	823, 855
Alw21I	GWGCWC	4 cut(s)	99, 1576, 1929, 2186
Alw26I	GTCTC	1 cut(s)	2009
Alw44I	GTGCAC	1 cut(s)	2182
AlwI	GGATC	5 cut(s)	149, 1305, 1605, 1859, 2080
AlwNI	CAGNNNCTG	2 cut(s)	1112, 1481
Ama87I	CYCGRG	1 cut(s)	1443
Aor51HI	AGCGCT	1 cut(s)	2177
AoxI	GGCC	7 cut(s)	684, 702, 1109, 1114, 1356, 1998, 2426
ApaLI	GTGCAC	1 cut(s)	2182
ApoI	RAATTY	4 cut(s)	264, 1247, 1648, 1841
ArsI	GACNNNNNNTTYG	2 cut(s)	1502, 1534
AseI	ATTAAT	1 cut(s)	237
AsiGI	ACCGGT	1 cut(s)	1237
Asp700I	GAANNNNTTC	4 cut(s)	712, 1650, 2102, 2451
AspLEI	GCGC	2 cut(s)	2178, 2327
AspS9I	GGNCC	1 cut(s)	1109
AsuHPI	GGTGA	5 cut(s)	602, 1286, 1351, 2031, 2480
AvaI	CYCGRG	1 cut(s)	1443
BaeGI	GKGCMC	1 cut(s)	2186
BalI	TGGCCA	2 cut(s)	704, 1116
BanII	GRGCYC	1 cut(s)	1929
BarI	GAAGNNNNNNTAC	2 cut(s)	1914, 1946
BbsI	GAAGAC	2 cut(s)	138, 1632
Bbv12I	GWGCWC	4 cut(s)	99, 1576, 1929, 2186
BccI	CCATC	6 cut(s)	485, 489, 626, 1196, 2351, 2385
BceAI	ACGGC	2 cut(s)	2128, 2482
BcgI	CGANNNNNNTGC	2 cut(s)	2360, 2394
BciT130I	CCWGG	4 cut(s)	828, 972, 1113, 1754
BciVI	GTATCC	1 cut(s)	1252
BclI	TGATCA	2 cut(s)	2170, 2314
BcoDI	GTCTC	1 cut(s)	2009
BfaI	CTAG	2 cut(s)	578, 836
BfmI	CTRYAG	2 cut(s)	876, 1482
BfoI	RGCGCY	1 cut(s)	2179
BfuAI	ACCTGC	2 cut(s)	883, 2429
BfuI	GTATCC	1 cut(s)	1252
BlpI	GCTNAGC	1 cut(s)	885
Bme1390I	CCNGG	4 cut(s)	828, 972, 1113, 1754
BmeT110I	CYCGRG	1 cut(s)	1443
BmgT120I	GGNCC	1 cut(s)	1109
BmrFI	CCNGG	4 cut(s)	828, 972, 1113, 1754
BmrI	ACTGGG	1 cut(s)	318
BmsI	GCATC	5 cut(s)	547, 683, 1079, 1386, 1660
BmuI	ACTGGG	1 cut(s)	318
BoxI	GACNNNNGTC	1 cut(s)	1551
BpiI	GAAGAC	2 cut(s)	138, 1632
BpmI	CTGGAG	2 cut(s)	1560, 1848
Bpu1102I	GCTNAGC	1 cut(s)	885
BpuEI	CTTGAG	1 cut(s)	1534
BsaBI	GATNNNNATC	1 cut(s)	513
BsaJI	CCNNGG	6 cut(s)	826, 827, 971, 1359, 1761, 2397
BsaWI	WCCGGW	1 cut(s)	1237
Bsc4I	CCNNNNNNNGG	4 cut(s)	287, 1202, 1271, 2258
Bse118I	RCCGGY	1 cut(s)	1237
Bse1I	ACTGG	5 cut(s)	125, 313, 1000, 1577, 2036
Bse3DI	GCAATG	3 cut(s)	669, 1336, 2371
Bse8I	GATNNNNATC	1 cut(s)	513
BseBI	CCWGG	4 cut(s)	828, 972, 1113, 1754
BseDI	CCNNGG	6 cut(s)	826, 827, 971, 1359, 1761, 2397
BseGI	GGATG	1 cut(s)	1897
BseJI	GATNNNNATC	1 cut(s)	513
BseLI	CCNNNNNNNGG	4 cut(s)	287, 1202, 1271, 2258
BseMI	GCAATG	3 cut(s)	669, 1336, 2371
BseMII	CTCAG	6 cut(s)	218, 225, 899, 1772, 1923, 2052
BseNI	ACTGG	5 cut(s)	125, 313, 1000, 1577, 2036
BseRI	GAGGAG	3 cut(s)	1254, 1301, 1784
BseSI	GKGCMC	1 cut(s)	2186
BseYI	CCCAGC	1 cut(s)	2474
Bsh1236I	CGCG	1 cut(s)	1086
BshFI	GGCC	7 cut(s)	686, 704, 1111, 1116, 1358, 2000, 2428
BshTI	ACCGGT	1 cut(s)	1237
BsiHKAI	GWGCWC	4 cut(s)	99, 1576, 1929, 2186
BsiHKCI	CYCGRG	1 cut(s)	1443
BsiSI	CCGG	1 cut(s)	1238
BslFI	GGGAC	2 cut(s)	817, 1178
BslI	CCNNNNNNNGG	4 cut(s)	287, 1202, 1271, 2258
BsmAI	GTCTC	1 cut(s)	2009
BsmFI	GGGAC	2 cut(s)	817, 1178
BsnI	GGCC	7 cut(s)	686, 704, 1111, 1116, 1358, 2000, 2428
BsoBI	CYCGRG	1 cut(s)	1443
Bsp1286I	GDGCHC	4 cut(s)	99, 1576, 1929, 2186
Bsp1407I	TGTACA	1 cut(s)	2073
Bsp143I	GATC	9 cut(s)	25, 154, 514, 1297, 1597, 1851, 2085, 2170, 2314
Bsp1720I	GCTNAGC	1 cut(s)	885
Bsp19I	CCATGG	3 cut(s)	1359, 1761, 2397
BspACI	CCGC	2 cut(s)	1126, 2204
BspANI	GGCC	7 cut(s)	686, 704, 1111, 1116, 1358, 2000, 2428
BspCNI	CTCAG	6 cut(s)	217, 224, 898, 1773, 1922, 2053
BspFNI	CGCG	1 cut(s)	1086
BspHI	TCATGA	1 cut(s)	99
BspMAI	CTGCAG	2 cut(s)	880, 1486
BspMI	ACCTGC	2 cut(s)	883, 2429
BspPI	GGATC	5 cut(s)	149, 1305, 1605, 1859, 2080
BspQI	GCTCTTC	1 cut(s)	1917
BsrDI	GCAATG	3 cut(s)	669, 1336, 2371
BsrFI	RCCGGY	1 cut(s)	1237
BsrGI	TGTACA	1 cut(s)	2073
BsrI	ACTGG	5 cut(s)	125, 313, 1000, 1577, 2036
BssAI	RCCGGY	1 cut(s)	1237
BssECI	CCNNGG	6 cut(s)	826, 827, 971, 1359, 1761, 2397
BssMI	GATC	9 cut(s)	25, 154, 514, 1297, 1597, 1851, 2085, 2170, 2314
BssT1I	CCWWGG	3 cut(s)	1359, 1761, 2397
Bst2UI	CCWGG	4 cut(s)	828, 972, 1113, 1754
Bst6I	CTCTTC	1 cut(s)	1917
BstAPI	GCANNNNNTGC	1 cut(s)	1481
BstAUI	TGTACA	1 cut(s)	2073
BstC8I	GCNNGC	4 cut(s)	736, 1461, 2002, 2160
BstDEI	CTNAG	7 cut(s)	204, 211, 885, 1392, 1781, 1909, 2061
BstDSI	CCRYGG	3 cut(s)	1359, 1761, 2397
BstENI	CCTNNNNNAGG	1 cut(s)	285
BstF5I	GGATG	1 cut(s)	1897
BstFNI	CGCG	1 cut(s)	1086
BstH2I	RGCGCY	1 cut(s)	2179
BstHHI	GCGC	2 cut(s)	2178, 2327
BstKTI	GATC	9 cut(s)	28, 157, 517, 1300, 1600, 1854, 2088, 2173, 2317
BstMAI	GTCTC	1 cut(s)	2009
BstMBI	GATC	9 cut(s)	25, 154, 514, 1297, 1597, 1851, 2085, 2170, 2314
BstMWI	GCNNNNNNNGC	7 cut(s)	1475, 1481, 1484, 1786, 1946, 1997, 2333
BstNI	CCWGG	4 cut(s)	828, 972, 1113, 1754
BstPAI	GACNNNNGTC	1 cut(s)	1551
BstSCI	CCNGG	4 cut(s)	826, 970, 1111, 1752
BstSFI	CTRYAG	2 cut(s)	876, 1482
BstSLI	GKGCMC	1 cut(s)	2186
BstUI	CGCG	1 cut(s)	1086
BstV2I	GAAGAC	2 cut(s)	138, 1632
BstX2I	RGATCY	2 cut(s)	154, 1851
BstXI	CCANNNNNNTGG	1 cut(s)	127
BstYI	RGATCY	2 cut(s)	154, 1851
BsuI	GTATCC	1 cut(s)	1252
BsuRI	GGCC	7 cut(s)	686, 704, 1111, 1116, 1358, 2000, 2428
BtgI	CCRYGG	3 cut(s)	1359, 1761, 2397
BtsCI	GGATG	1 cut(s)	1897
BtsI	GCAGTG	2 cut(s)	842, 1672
BveI	ACCTGC	2 cut(s)	883, 2429
Cac8I	GCNNGC	4 cut(s)	736, 1461, 2002, 2160
CaiI	CAGNNNCTG	2 cut(s)	1112, 1481
CciI	TCATGA	1 cut(s)	99
CfoI	GCGC	2 cut(s)	2178, 2327
Cfr10I	RCCGGY	1 cut(s)	1237
Cfr13I	GGNCC	1 cut(s)	1109
CseI	GACGC	3 cut(s)	32, 283, 878
Csp6I	GTAC	4 cut(s)	756, 1052, 2074, 2110
CspAI	ACCGGT	1 cut(s)	1237
CviQI	GTAC	4 cut(s)	756, 1052, 2074, 2110
DdeI	CTNAG	7 cut(s)	204, 211, 885, 1392, 1781, 1909, 2061
DpnI	GATC	9 cut(s)	27, 156, 516, 1299, 1599, 1853, 2087, 2172, 2316
DpnII	GATC	9 cut(s)	25, 154, 514, 1297, 1597, 1851, 2085, 2170, 2314
DraI	TTTAAA	1 cut(s)	193
DraIII	CACNNNGTG	1 cut(s)	848
EaeI	YGGCCR	2 cut(s)	702, 1114
Eam1104I	CTCTTC	1 cut(s)	1917
EarI	CTCTTC	1 cut(s)	1917
EciI	GGCGGA	1 cut(s)	2193
Ecl136II	GAGCTC	1 cut(s)	1927
Eco130I	CCWWGG	3 cut(s)	1359, 1761, 2397
Eco147I	AGGCCT	2 cut(s)	686, 2000
Eco24I	GRGCYC	1 cut(s)	1929
Eco47III	AGCGCT	1 cut(s)	2177
Eco53kI	GAGCTC	1 cut(s)	1927
Eco57I	CTGAAG	6 cut(s)	243, 417, 701, 702, 714, 1125
Eco88I	CYCGRG	1 cut(s)	1443
EcoICRI	GAGCTC	1 cut(s)	1927
EcoNI	CCTNNNNNAGG	1 cut(s)	285
EcoO109I	RGGNCCY	1 cut(s)	1109
EcoRII	CCWGG	4 cut(s)	826, 970, 1111, 1752
EcoT14I	CCWWGG	3 cut(s)	1359, 1761, 2397
EcoT38I	GRGCYC	1 cut(s)	1929
ErhI	CCWWGG	3 cut(s)	1359, 1761, 2397
FaqI	GGGAC	2 cut(s)	817, 1178
FauNDI	CATATG	1 cut(s)	1465
FbaI	TGATCA	2 cut(s)	2170, 2314
FblI	GTMKAC	1 cut(s)	990
FokI	GGATG	1 cut(s)	1904
FriOI	GRGCYC	1 cut(s)	1929
FspBI	CTAG	2 cut(s)	578, 836
GlaI	GCGC	2 cut(s)	2177, 2326
GsaI	CCCAGC	1 cut(s)	2478
GsuI	CTGGAG	2 cut(s)	1560, 1848
HaeII	RGCGCY	1 cut(s)	2179
HaeIII	GGCC	7 cut(s)	686, 704, 1111, 1116, 1358, 2000, 2428
HapII	CCGG	1 cut(s)	1238
HgaI	GACGC	3 cut(s)	32, 283, 878
HhaI	GCGC	2 cut(s)	2178, 2327
Hin6I	GCGC	2 cut(s)	2176, 2325
HinP1I	GCGC	2 cut(s)	2176, 2325
HincII	GTYRAC	2 cut(s)	991, 1582
HindII	GTYRAC	2 cut(s)	991, 1582
HindIII	AAGCTT	4 cut(s)	89, 648, 696, 2334
HinfI	GANTC	7 cut(s)	545, 602, 661, 722, 764, 1547, 2393
HpaI	GTTAAC	1 cut(s)	1582
HpaII	CCGG	1 cut(s)	1238
HphI	GGTGA	5 cut(s)	602, 1286, 1351, 2031, 2480
Hpy166II	GTNNAC	5 cut(s)	842, 991, 1582, 2074, 2184
Hpy188I	TCNGA	6 cut(s)	666, 721, 1174, 1557, 1645, 1866
Hpy8I	GTNNAC	5 cut(s)	842, 991, 1582, 2074, 2184
HpyCH4IV	ACGT	1 cut(s)	2407
HpyF10VI	GCNNNNNNNGC	7 cut(s)	1475, 1481, 1484, 1786, 1946, 1997, 2333
HpyF3I	CTNAG	7 cut(s)	204, 211, 885, 1392, 1781, 1909, 2061
HpySE526I	ACGT	1 cut(s)	2407
HspAI	GCGC	2 cut(s)	2176, 2325
Ksp22I	TGATCA	2 cut(s)	2170, 2314
KspAI	GTTAAC	1 cut(s)	1582
Kzo9I	GATC	9 cut(s)	25, 154, 514, 1297, 1597, 1851, 2085, 2170, 2314
LguI	GCTCTTC	1 cut(s)	1917
LmnI	GCTCC	6 cut(s)	1314, 1404, 1579, 1797, 2062, 2278
LweI	GCATC	5 cut(s)	547, 683, 1079, 1386, 1660
MaeI	CTAG	2 cut(s)	578, 836
MaeII	ACGT	1 cut(s)	2407
MaeIII	GTNAC	5 cut(s)	214, 1339, 1529, 2037, 2245
MalI	GATC	9 cut(s)	27, 156, 516, 1299, 1599, 1853, 2087, 2172, 2316
MboI	GATC	9 cut(s)	25, 154, 514, 1297, 1597, 1851, 2085, 2170, 2314
MflI	RGATCY	2 cut(s)	154, 1851
MhlI	GDGCHC	4 cut(s)	99, 1576, 1929, 2186
MlsI	TGGCCA	2 cut(s)	704, 1116
MluNI	TGGCCA	2 cut(s)	704, 1116
MlyI	GAGTC	4 cut(s)	716, 758, 1541, 2402
MmeI	TCCRAC	3 cut(s)	522, 1934, 2276
Mox20I	TGGCCA	2 cut(s)	704, 1116
MroXI	GAANNNNTTC	4 cut(s)	712, 1650, 2102, 2451
MscI	TGGCCA	2 cut(s)	704, 1116
MseI	TTAA	7 cut(s)	192, 237, 369, 962, 1581, 1809, 2423
MslI	CAYNNNNRTG	1 cut(s)	125
Msp20I	TGGCCA	2 cut(s)	704, 1116
MspA1I	CMGCKG	1 cut(s)	1481
MspI	CCGG	1 cut(s)	1238
MspR9I	CCNGG	4 cut(s)	828, 972, 1113, 1754
MvaI	CCWGG	4 cut(s)	828, 972, 1113, 1754
MvnI	CGCG	1 cut(s)	1086
MwoI	GCNNNNNNNGC	7 cut(s)	1475, 1481, 1484, 1786, 1946, 1997, 2333
NcoI	CCATGG	3 cut(s)	1359, 1761, 2397
NdeI	CATATG	1 cut(s)	1465
NdeII	GATC	9 cut(s)	25, 154, 514, 1297, 1597, 1851, 2085, 2170, 2314
NmuCI	GTSAC	5 cut(s)	214, 1339, 1529, 2037, 2245
PagI	TCATGA	1 cut(s)	99
PasI	CCCWGGG	1 cut(s)	827
PceI	AGGCCT	2 cut(s)	686, 2000
PciSI	GCTCTTC	1 cut(s)	1917
PdmI	GAANNNNTTC	4 cut(s)	712, 1650, 2102, 2451
PfeI	GAWTC	3 cut(s)	545, 602, 661
PflMI	CCANNNNNTGG	1 cut(s)	2258
PinAI	ACCGGT	1 cut(s)	1237
PleI	GAGTC	4 cut(s)	716, 758, 1541, 2401
PpsI	GAGTC	4 cut(s)	716, 758, 1541, 2401
PshAI	GACNNNNGTC	1 cut(s)	1551
PshBI	ATTAAT	1 cut(s)	237
PsiI	TTATAA	1 cut(s)	170
Psp124BI	GAGCTC	1 cut(s)	1929
Psp6I	CCWGG	4 cut(s)	826, 970, 1111, 1752
PspFI	CCCAGC	1 cut(s)	2474
PspGI	CCWGG	4 cut(s)	826, 970, 1111, 1752
PspPI	GGNCC	1 cut(s)	1109
PstI	CTGCAG	2 cut(s)	880, 1486
PstNI	CAGNNNCTG	2 cut(s)	1112, 1481
PsuI	RGATCY	2 cut(s)	154, 1851
PvuII	CAGCTG	1 cut(s)	1481
RsaI	GTAC	4 cut(s)	757, 1053, 2075, 2111
RsaNI	GTAC	4 cut(s)	756, 1052, 2074, 2110
RseI	CAYNNNNRTG	1 cut(s)	125
SacI	GAGCTC	1 cut(s)	1929
SalI	GTCGAC	1 cut(s)	989
SapI	GCTCTTC	1 cut(s)	1917
SaqAI	TTAA	7 cut(s)	192, 237, 369, 962, 1581, 1809, 2423
Sau3AI	GATC	9 cut(s)	25, 154, 514, 1297, 1597, 1851, 2085, 2170, 2314
Sau96I	GGNCC	1 cut(s)	1109
SchI	GAGTC	4 cut(s)	716, 758, 1541, 2402
ScrFI	CCNGG	4 cut(s)	828, 972, 1113, 1754
SduI	GDGCHC	4 cut(s)	99, 1576, 1929, 2186
SfaNI	GCATC	5 cut(s)	547, 683, 1079, 1386, 1660
SfcI	CTRYAG	2 cut(s)	876, 1482
SmiMI	CAYNNNNRTG	1 cut(s)	125
SmlI	CTYRAG	1 cut(s)	1549
SmoI	CTYRAG	1 cut(s)	1549
SseBI	AGGCCT	2 cut(s)	686, 2000
SsiI	CCGC	2 cut(s)	1126, 2204
SspMI	CTAG	2 cut(s)	578, 836
SstI	GAGCTC	1 cut(s)	1929
StuI	AGGCCT	2 cut(s)	686, 2000
StyD4I	CCNGG	4 cut(s)	826, 970, 1111, 1752
StyI	CCWWGG	3 cut(s)	1359, 1761, 2397
TaiI	ACGT	1 cut(s)	2410
TaqI	TCGA	4 cut(s)	990, 2355, 2380, 2443
TatI	WGTACW	3 cut(s)	755, 1051, 2073
TfiI	GAWTC	3 cut(s)	545, 602, 661
Tru1I	TTAA	7 cut(s)	192, 237, 369, 962, 1581, 1809, 2423
Tru9I	TTAA	7 cut(s)	192, 237, 369, 962, 1581, 1809, 2423
TseFI	GTSAC	5 cut(s)	214, 1339, 1529, 2037, 2245
Tsp45I	GTSAC	5 cut(s)	214, 1339, 1529, 2037, 2245
Van91I	CCANNNNNTGG	1 cut(s)	2258
VneI	GTGCAC	1 cut(s)	2182
VspI	ATTAAT	1 cut(s)	237
XagI	CCTNNNNNAGG	1 cut(s)	285
XapI	RAATTY	4 cut(s)	264, 1247, 1648, 1841
XcmI	CCANNNNNNNNNTGG	2 cut(s)	488, 1720
XmiI	GTMKAC	1 cut(s)	990
XmnI	GAANNNNTTC	4 cut(s)	712, 1650, 2102, 2451
XspI	CTAG	2 cut(s)	578, 836

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.