ATP-dependent RNA helicase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DEAD | PF00270 | 307 - 485 | 3.3e-07 | DEAD/DEAH box helicase |
| Helicase_C | PF00271 | 730 - 819 | 7.1e-10 | Helicase conserved C-terminal domain |
| WHD_HA2 | PF04408 | 881 - 908 | 4.2e-09 | Helicase associated domain (HA2), winged-helix |
| HA2_C | PF21010 | 910 - 1006 | 7.1e-08 | Helicase associated domain (HA2), ratchet-like |
| OB_NTP_bind | PF07717 | 1092 - 1181 | 7.4e-20 | Oligonucleotide/oligosaccharide-binding (OB)-fold |
| DHX37_C | PF23362 | 1249 - 1325 | 1.8e-14 | DEAH helicase DHX37 C-terminal domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1712 |
| AatII | GACGTC | 1 cut(s) | 3484 |
| Acc36I | ACCTGC | 1 cut(s) | 3794 |
| AccB1I | GGYRCC | 2 cut(s) | 80, 3559 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 3632, 4023 |
| AccBSI | CCGCTC | 2 cut(s) | 1291, 2444 |
| AccI | GTMKAC | 3 cut(s) | 2115, 3085, 3456 |
| AccII | CGCG | 2 cut(s) | 1347, 3816 |
| AccIII | TCCGGA | 1 cut(s) | 2789 |
| AclWI | GGATC | 3 cut(s) | 903, 1487, 3662 |
| AcoI | YGGCCR | 4 cut(s) | 2283, 2461, 3724, 3831 |
| AcsI | RAATTY | 4 cut(s) | 1199, 1765, 2987, 3065 |
| AcuI | CTGAAG | 4 cut(s) | 251, 1217, 2019, 3366 |
| AcvI | CACGTG | 2 cut(s) | 1331, 1625 |
| AcyI | GRCGYC | 2 cut(s) | 624, 3481 |
| AfaI | GTAC | 6 cut(s) | 390, 1047, 1342, 1670, 2400, 2805 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 63, 147, 222, 1628, 2147, 2549, 2621, 3632, 4023 |
| AflIII | ACRYGT | 3 cut(s) | 1330, 3217, 3814 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3480 |
| AhlI | ACTAGT | 1 cut(s) | 3503 |
| AjnI | CCWGG | 5 cut(s) | 528, 2182, 2317, 2458, 3726 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1008, 1040 |
| AleI | CACNNNNGTG | 1 cut(s) | 2291 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 1384, 1416, 2354, 2386 |
| Alw21I | GWGCWC | 2 cut(s) | 3273, 3551 |
| Alw26I | GTCTC | 3 cut(s) | 767, 965, 3546 |
| Alw44I | GTGCAC | 1 cut(s) | 3547 |
| AlwI | GGATC | 3 cut(s) | 903, 1487, 3662 |
| AlwNI | CAGNNNCTG | 7 cut(s) | 314, 1757, 2111, 2828, 2831, 3443, 3733 |
| Aor13HI | TCCGGA | 1 cut(s) | 2789 |
| ApaLI | GTGCAC | 1 cut(s) | 3547 |
| ApoI | RAATTY | 4 cut(s) | 1199, 1765, 2987, 3065 |
| AseI | ATTAAT | 1 cut(s) | 1797 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1324, 2065, 2975 |
| AspLEI | GCGC | 1 cut(s) | 124 |
| AspS9I | GGNCC | 7 cut(s) | 760, 1831, 2456, 2539, 2706, 3635, 3769 |
| AsuHPI | GGTGA | 4 cut(s) | 749, 811, 1193, 1964 |
| AvaII | GGWCC | 3 cut(s) | 760, 2539, 3635 |
| AxyI | CCTNAGG | 2 cut(s) | 483, 870 |
| BaeGI | GKGCMC | 2 cut(s) | 83, 3551 |
| BalI | TGGCCA | 3 cut(s) | 2285, 2463, 3833 |
| BanI | GGYRCC | 2 cut(s) | 80, 3559 |
| BanII | GRGCYC | 3 cut(s) | 3059, 3273, 4002 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 3258, 3290 |
| BbrPI | CACGTG | 2 cut(s) | 1331, 1625 |
| BbsI | GAAGAC | 6 cut(s) | 327, 575, 1121, 1467, 2692, 3684 |
| Bbv12I | GWGCWC | 2 cut(s) | 3273, 3551 |
| BbvCI | CCTCAGC | 1 cut(s) | 1773 |
| BccI | CCATC | 9 cut(s) | 14, 907, 1202, 1205, 1842, 1943, 2543, 2615, 2900 |
| BceAI | ACGGC | 3 cut(s) | 371, 1065, 3739 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 25, 59 |
| BciT130I | CCWGG | 5 cut(s) | 530, 2184, 2319, 2460, 3728 |
| BciVI | GTATCC | 2 cut(s) | 1546, 2602 |
| BclI | TGATCA | 1 cut(s) | 1405 |
| BcoDI | GTCTC | 3 cut(s) | 767, 965, 3546 |
| BcuI | ACTAGT | 1 cut(s) | 3503 |
| BfaI | CTAG | 9 cut(s) | 468, 1032, 2142, 2699, 2742, 2807, 2933, 3504, 3920 |
| BfmI | CTRYAG | 3 cut(s) | 329, 2112, 2487 |
| BfoI | RGCGCY | 1 cut(s) | 125 |
| BfuAI | ACCTGC | 1 cut(s) | 3794 |
| BfuI | GTATCC | 2 cut(s) | 1546, 2602 |
| BlpI | GCTNAGC | 1 cut(s) | 1104 |
| BmcAI | AGTACT | 2 cut(s) | 1670, 2805 |
| Bme1390I | CCNGG | 5 cut(s) | 530, 2184, 2319, 2460, 3728 |
| Bme18I | GGWCC | 3 cut(s) | 760, 2539, 3635 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3480 |
| BmgT120I | GGNCC | 7 cut(s) | 760, 1831, 2456, 2539, 2706, 3635, 3769 |
| BmiI | GGNNCC | 5 cut(s) | 82, 2457, 2541, 3561, 3771 |
| BmrFI | CCNGG | 5 cut(s) | 530, 2184, 2319, 2460, 3728 |
| BmrI | ACTGGG | 2 cut(s) | 1659, 3053 |
| BmsI | GCATC | 5 cut(s) | 1732, 1888, 2426, 2736, 2998 |
| BmuI | ACTGGG | 2 cut(s) | 1659, 3053 |
| BpiI | GAAGAC | 6 cut(s) | 327, 575, 1121, 1467, 2692, 3684 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 3393, 3425 |
| BpmI | CTGGAG | 2 cut(s) | 2601, 3119 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1773 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1104 |
| BpuEI | CTTGAG | 2 cut(s) | 140, 2359 |
| BsaAI | YACGTR | 2 cut(s) | 1331, 1625 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1866 |
| BsaHI | GRCGYC | 2 cut(s) | 624, 3481 |
| BsaI | GGTCTC | 1 cut(s) | 3546 |
| BsaJI | CCNNGG | 4 cut(s) | 2318, 2631, 2709, 3235 |
| BsaWI | WCCGGW | 1 cut(s) | 2789 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 3095, 3125 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 63, 147, 222, 1628, 2147, 2549, 2621, 3632, 4023 |
| Bse1I | ACTGG | 8 cut(s) | 979, 1502, 1654, 1746, 1935, 2347, 3059, 3929 |
| Bse21I | CCTNAGG | 2 cut(s) | 483, 870 |
| Bse3DI | GCAATG | 2 cut(s) | 2189, 2220 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1866 |
| BseAI | TCCGGA | 1 cut(s) | 2789 |
| BseBI | CCWGG | 5 cut(s) | 530, 2184, 2319, 2460, 3728 |
| BseDI | CCNNGG | 4 cut(s) | 2318, 2631, 2709, 3235 |
| BseGI | GGATG | 8 cut(s) | 250, 1894, 1903, 1954, 2554, 2641, 2751, 2911 |
| BseJI | GATNNNNATC | 1 cut(s) | 1866 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 63, 147, 222, 1628, 2147, 2549, 2621, 3632, 4023 |
| BseMI | GCAATG | 2 cut(s) | 2189, 2220 |
| BseNI | ACTGG | 8 cut(s) | 979, 1502, 1654, 1746, 1935, 2347, 3059, 3929 |
| BseRI | GAGGAG | 6 cut(s) | 163, 1027, 2027, 2604, 4042, 4047 |
| BseSI | GKGCMC | 2 cut(s) | 83, 3551 |
| BseYI | CCCAGC | 4 cut(s) | 141, 216, 2999, 3896 |
| BsgI | GTGCAG | 4 cut(s) | 554, 807, 1770, 2454 |
| Bsh1236I | CGCG | 2 cut(s) | 1347, 3816 |
| BshNI | GGYRCC | 2 cut(s) | 80, 3559 |
| BsiHKAI | GWGCWC | 2 cut(s) | 3273, 3551 |
| BsiSI | CCGG | 1 cut(s) | 2790 |
| BslFI | GGGAC | 1 cut(s) | 2525 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 63, 147, 222, 1628, 2147, 2549, 2621, 3632, 4023 |
| BsmAI | GTCTC | 3 cut(s) | 767, 965, 3546 |
| BsmFI | GGGAC | 1 cut(s) | 2525 |
| BsmI | GAATGC | 1 cut(s) | 1326 |
| Bso31I | GGTCTC | 1 cut(s) | 3546 |
| Bsp1286I | GDGCHC | 5 cut(s) | 83, 3059, 3273, 3551, 4002 |
| Bsp13I | TCCGGA | 1 cut(s) | 2789 |
| Bsp143I | GATC | 5 cut(s) | 895, 1405, 1492, 1867, 3667 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1104 |
| Bsp19I | CCATGG | 1 cut(s) | 2709 |
| Bsp68I | TCGCGA | 1 cut(s) | 1347 |
| BspEI | TCCGGA | 1 cut(s) | 2789 |
| BspFNI | CGCG | 2 cut(s) | 1347, 3816 |
| BspHI | TCATGA | 5 cut(s) | 420, 1203, 1285, 1489, 2565 |
| BspLI | GGNNCC | 5 cut(s) | 82, 2457, 2541, 3561, 3771 |
| BspMAI | CTGCAG | 2 cut(s) | 333, 2491 |
| BspMI | ACCTGC | 1 cut(s) | 3794 |
| BspPI | GGATC | 3 cut(s) | 903, 1487, 3662 |
| BspQI | GCTCTTC | 2 cut(s) | 2434, 3261 |
| BspT107I | GGYRCC | 2 cut(s) | 80, 3559 |
| BspTNI | GGTCTC | 1 cut(s) | 3546 |
| BsrBI | CCGCTC | 2 cut(s) | 1291, 2444 |
| BsrDI | GCAATG | 2 cut(s) | 2189, 2220 |
| BsrI | ACTGG | 8 cut(s) | 979, 1502, 1654, 1746, 1935, 2347, 3059, 3929 |
| BssECI | CCNNGG | 4 cut(s) | 2318, 2631, 2709, 3235 |
| BssMI | GATC | 5 cut(s) | 895, 1405, 1492, 1867, 3667 |
| BssNAI | GTATAC | 1 cut(s) | 3457 |
| BssNI | GRCGYC | 2 cut(s) | 624, 3481 |
| BssT1I | CCWWGG | 2 cut(s) | 2631, 2709 |
| Bst1107I | GTATAC | 1 cut(s) | 3457 |
| Bst2UI | CCWGG | 5 cut(s) | 530, 2184, 2319, 2460, 3728 |
| Bst6I | CTCTTC | 5 cut(s) | 330, 1045, 2434, 2777, 3261 |
| BstACI | GRCGYC | 2 cut(s) | 624, 3481 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 1094, 2828, 2831 |
| BstBAI | YACGTR | 2 cut(s) | 1331, 1625 |
| BstC8I | GCNNGC | 8 cut(s) | 54, 406, 1021, 1584, 2223, 3385, 3389, 3814 |
| BstDSI | CCRYGG | 2 cut(s) | 2709, 3235 |
| BstF5I | GGATG | 8 cut(s) | 250, 1894, 1903, 1954, 2554, 2641, 2751, 2911 |
| BstFNI | CGCG | 2 cut(s) | 1347, 3816 |
| BstH2I | RGCGCY | 1 cut(s) | 125 |
| BstHHI | GCGC | 1 cut(s) | 124 |
| BstKTI | GATC | 5 cut(s) | 898, 1408, 1495, 1870, 3670 |
| BstMAI | GTCTC | 3 cut(s) | 767, 965, 3546 |
| BstMBI | GATC | 5 cut(s) | 895, 1405, 1492, 1867, 3667 |
| BstNI | CCWGG | 5 cut(s) | 530, 2184, 2319, 2460, 3728 |
| BstNSI | RCATGY | 5 cut(s) | 2198, 3221, 3391, 3493, 3665 |
| BstSCI | CCNGG | 5 cut(s) | 528, 2182, 2317, 2458, 3726 |
| BstSFI | CTRYAG | 3 cut(s) | 329, 2112, 2487 |
| BstSLI | GKGCMC | 2 cut(s) | 83, 3551 |
| BstUI | CGCG | 2 cut(s) | 1347, 3816 |
| BstV2I | GAAGAC | 6 cut(s) | 327, 575, 1121, 1467, 2692, 3684 |
| BstX2I | RGATCY | 1 cut(s) | 895 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2293 |
| BstYI | RGATCY | 1 cut(s) | 895 |
| BstZ17I | GTATAC | 1 cut(s) | 3457 |
| Bsu36I | CCTNAGG | 2 cut(s) | 483, 870 |
| BsuI | GTATCC | 2 cut(s) | 1546, 2602 |
| BtgI | CCRYGG | 2 cut(s) | 2709, 3235 |
| BtgZI | GCGATG | 1 cut(s) | 3021 |
| BtsCI | GGATG | 8 cut(s) | 250, 1894, 1903, 1954, 2554, 2641, 2751, 2911 |
| BtsI | GCAGTG | 1 cut(s) | 3041 |
| BtuMI | TCGCGA | 1 cut(s) | 1347 |
| BveI | ACCTGC | 1 cut(s) | 3794 |
| Cac8I | GCNNGC | 8 cut(s) | 54, 406, 1021, 1584, 2223, 3385, 3389, 3814 |
| CaiI | CAGNNNCTG | 7 cut(s) | 314, 1757, 2111, 2828, 2831, 3443, 3733 |
| CciI | TCATGA | 5 cut(s) | 420, 1203, 1285, 1489, 2565 |
| CfoI | GCGC | 1 cut(s) | 124 |
| Cfr13I | GGNCC | 7 cut(s) | 760, 1831, 2456, 2539, 2706, 3635, 3769 |
| CseI | GACGC | 2 cut(s) | 613, 2016 |
| CsiI | ACCWGGT | 1 cut(s) | 528 |
| Csp6I | GTAC | 6 cut(s) | 389, 1046, 1341, 1669, 2399, 2804 |
| CviQI | GTAC | 6 cut(s) | 389, 1046, 1341, 1669, 2399, 2804 |
| DpnI | GATC | 5 cut(s) | 897, 1407, 1494, 1869, 3669 |
| DpnII | GATC | 5 cut(s) | 895, 1405, 1492, 1867, 3667 |
| DraI | TTTAAA | 1 cut(s) | 2073 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3480 |
| EaeI | YGGCCR | 4 cut(s) | 2283, 2461, 3724, 3831 |
| Eam1104I | CTCTTC | 5 cut(s) | 330, 1045, 2434, 2777, 3261 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3480 |
| EarI | CTCTTC | 5 cut(s) | 330, 1045, 2434, 2777, 3261 |
| EciI | GGCGGA | 2 cut(s) | 648, 3932 |
| Ecl136II | GAGCTC | 1 cut(s) | 3271 |
| Eco130I | CCWWGG | 2 cut(s) | 2631, 2709 |
| Eco147I | AGGCCT | 2 cut(s) | 287, 832 |
| Eco24I | GRGCYC | 3 cut(s) | 3059, 3273, 4002 |
| Eco31I | GGTCTC | 1 cut(s) | 3546 |
| Eco32I | GATATC | 2 cut(s) | 1972, 3377 |
| Eco47I | GGWCC | 3 cut(s) | 760, 2539, 3635 |
| Eco53kI | GAGCTC | 1 cut(s) | 3271 |
| Eco57I | CTGAAG | 4 cut(s) | 251, 1217, 2019, 3366 |
| Eco72I | CACGTG | 2 cut(s) | 1331, 1625 |
| Eco81I | CCTNAGG | 2 cut(s) | 483, 870 |
| EcoICRI | GAGCTC | 1 cut(s) | 3271 |
| EcoO109I | RGGNCCY | 2 cut(s) | 2456, 2539 |
| EcoRI | GAATTC | 1 cut(s) | 3065 |
| EcoRII | CCWGG | 5 cut(s) | 528, 2182, 2317, 2458, 3726 |
| EcoRV | GATATC | 2 cut(s) | 1972, 3377 |
| EcoT14I | CCWWGG | 2 cut(s) | 2631, 2709 |
| EcoT38I | GRGCYC | 3 cut(s) | 3059, 3273, 4002 |
| ErhI | CCWWGG | 2 cut(s) | 2631, 2709 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1365, 1397, 3469, 3501 |
| FaqI | GGGAC | 1 cut(s) | 2525 |
| FauI | CCCGC | 3 cut(s) | 17, 501, 2437 |
| FauNDI | CATATG | 3 cut(s) | 1117, 1906, 2392 |
| FbaI | TGATCA | 1 cut(s) | 1405 |
| FblI | GTMKAC | 3 cut(s) | 2115, 3085, 3456 |
| FokI | GGATG | 8 cut(s) | 257, 1901, 1910, 1961, 2561, 2648, 2758, 2918 |
| FriOI | GRGCYC | 3 cut(s) | 3059, 3273, 4002 |
| FspBI | CTAG | 9 cut(s) | 468, 1032, 2142, 2699, 2742, 2807, 2933, 3504, 3920 |
| GlaI | GCGC | 1 cut(s) | 123 |
| GsaI | CCCAGC | 4 cut(s) | 145, 220, 3003, 3900 |
| GsuI | CTGGAG | 2 cut(s) | 2601, 3119 |
| HaeII | RGCGCY | 1 cut(s) | 125 |
| HapII | CCGG | 1 cut(s) | 2790 |
| HgaI | GACGC | 2 cut(s) | 613, 2016 |
| HhaI | GCGC | 1 cut(s) | 124 |
| Hin1I | GRCGYC | 2 cut(s) | 624, 3481 |
| Hin6I | GCGC | 1 cut(s) | 122 |
| HinP1I | GCGC | 1 cut(s) | 122 |
| HindIII | AAGCTT | 3 cut(s) | 414, 1481, 2049 |
| HpaII | CCGG | 1 cut(s) | 2790 |
| HphI | GGTGA | 4 cut(s) | 749, 811, 1193, 1964 |
| Hpy166II | GTNNAC | 6 cut(s) | 479, 1928, 2116, 3086, 3457, 3549 |
| Hpy8I | GTNNAC | 6 cut(s) | 479, 1928, 2116, 3086, 3457, 3549 |
| HpyCH4IV | ACGT | 7 cut(s) | 376, 1330, 1624, 2269, 2431, 3481, 3981 |
| HpySE526I | ACGT | 7 cut(s) | 376, 1330, 1624, 2269, 2431, 3481, 3981 |
| Hsp92I | GRCGYC | 2 cut(s) | 624, 3481 |
| HspAI | GCGC | 1 cut(s) | 122 |
| Kpn2I | TCCGGA | 1 cut(s) | 2789 |
| Ksp22I | TGATCA | 1 cut(s) | 1405 |
| Kzo9I | GATC | 5 cut(s) | 895, 1405, 1492, 1867, 3667 |
| LguI | GCTCTTC | 2 cut(s) | 2434, 3261 |
| LmnI | GCTCC | 8 cut(s) | 916, 1040, 1196, 1293, 2754, 2792, 3276, 3649 |
| LweI | GCATC | 5 cut(s) | 1732, 1888, 2426, 2736, 2998 |
| MabI | ACCWGGT | 1 cut(s) | 528 |
| MaeI | CTAG | 9 cut(s) | 468, 1032, 2142, 2699, 2742, 2807, 2933, 3504, 3920 |
| MaeII | ACGT | 7 cut(s) | 376, 1330, 1624, 2269, 2431, 3481, 3981 |
| MaeIII | GTNAC | 7 cut(s) | 455, 1066, 1645, 2028, 2468, 2498, 3499 |
| MalI | GATC | 5 cut(s) | 897, 1407, 1494, 1869, 3669 |
| MbiI | CCGCTC | 2 cut(s) | 1291, 2444 |
| MboI | GATC | 5 cut(s) | 895, 1405, 1492, 1867, 3667 |
| MfeI | CAATTG | 1 cut(s) | 3672 |
| MflI | RGATCY | 1 cut(s) | 895 |
| MhlI | GDGCHC | 5 cut(s) | 83, 3059, 3273, 3551, 4002 |
| MlsI | TGGCCA | 3 cut(s) | 2285, 2463, 3833 |
| MluI | ACGCGT | 1 cut(s) | 3814 |
| MluNI | TGGCCA | 3 cut(s) | 2285, 2463, 3833 |
| MlyI | GAGTC | 5 cut(s) | 368, 581, 2111, 2737, 3767 |
| MmeI | TCCRAC | 5 cut(s) | 144, 219, 1875, 2103, 2633 |
| Mox20I | TGGCCA | 3 cut(s) | 2285, 2463, 3833 |
| MroI | TCCGGA | 1 cut(s) | 2789 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1324, 2065, 2975 |
| MscI | TGGCCA | 3 cut(s) | 2285, 2463, 3833 |
| MslI | CAYNNNNRTG | 1 cut(s) | 2291 |
| Msp20I | TGGCCA | 3 cut(s) | 2285, 2463, 3833 |
| MspA1I | CMGCKG | 2 cut(s) | 145, 2828 |
| MspI | CCGG | 1 cut(s) | 2790 |
| MspR9I | CCNGG | 5 cut(s) | 530, 2184, 2319, 2460, 3728 |
| MunI | CAATTG | 1 cut(s) | 3672 |
| Mva1269I | GAATGC | 1 cut(s) | 1326 |
| MvaI | CCWGG | 5 cut(s) | 530, 2184, 2319, 2460, 3728 |
| MvnI | CGCG | 2 cut(s) | 1347, 3816 |
| NcoI | CCATGG | 1 cut(s) | 2709 |
| NdeI | CATATG | 3 cut(s) | 1117, 1906, 2392 |
| NdeII | GATC | 5 cut(s) | 895, 1405, 1492, 1867, 3667 |
| NlaIV | GGNNCC | 5 cut(s) | 82, 2457, 2541, 3561, 3771 |
| NmeAIII | GCCGAG | 1 cut(s) | 3536 |
| NmuCI | GTSAC | 3 cut(s) | 455, 1645, 2028 |
| NruI | TCGCGA | 1 cut(s) | 1347 |
| NspI | RCATGY | 5 cut(s) | 2198, 3221, 3391, 3493, 3665 |
| OliI | CACNNNNGTG | 1 cut(s) | 2291 |
| PaeI | GCATGC | 1 cut(s) | 3391 |
| PagI | TCATGA | 5 cut(s) | 420, 1203, 1285, 1489, 2565 |
| PceI | AGGCCT | 2 cut(s) | 287, 832 |
| PciI | ACATGT | 1 cut(s) | 3217 |
| PciSI | GCTCTTC | 2 cut(s) | 2434, 3261 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1336 |
| PctI | GAATGC | 1 cut(s) | 1326 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1324, 2065, 2975 |
| PfeI | GAWTC | 7 cut(s) | 1813, 1910, 1955, 2659, 3823, 3892, 4011 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 3632, 4023 |
| PleI | GAGTC | 5 cut(s) | 367, 581, 2111, 2736, 3766 |
| PmaCI | CACGTG | 2 cut(s) | 1331, 1625 |
| PmlI | CACGTG | 2 cut(s) | 1331, 1625 |
| PpsI | GAGTC | 5 cut(s) | 367, 581, 2111, 2736, 3766 |
| Ppu21I | YACGTR | 2 cut(s) | 1331, 1625 |
| PpuMI | RGGWCCY | 1 cut(s) | 2539 |
| PscI | ACATGT | 1 cut(s) | 3217 |
| PshBI | ATTAAT | 1 cut(s) | 1797 |
| PsiI | TTATAA | 1 cut(s) | 1712 |
| Psp124BI | GAGCTC | 1 cut(s) | 3273 |
| Psp5II | RGGWCCY | 1 cut(s) | 2539 |
| Psp6I | CCWGG | 5 cut(s) | 528, 2182, 2317, 2458, 3726 |
| PspCI | CACGTG | 2 cut(s) | 1331, 1625 |
| PspFI | CCCAGC | 4 cut(s) | 141, 216, 2999, 3896 |
| PspGI | CCWGG | 5 cut(s) | 528, 2182, 2317, 2458, 3726 |
| PspN4I | GGNNCC | 5 cut(s) | 82, 2457, 2541, 3561, 3771 |
| PspPI | GGNCC | 7 cut(s) | 760, 1831, 2456, 2539, 2706, 3635, 3769 |
| PspPPI | RGGWCCY | 1 cut(s) | 2539 |
| PstI | CTGCAG | 2 cut(s) | 333, 2491 |
| PstNI | CAGNNNCTG | 7 cut(s) | 314, 1757, 2111, 2828, 2831, 3443, 3733 |
| PsuI | RGATCY | 1 cut(s) | 895 |
| PvuII | CAGCTG | 1 cut(s) | 2828 |
| RruI | TCGCGA | 1 cut(s) | 1347 |
| RsaI | GTAC | 6 cut(s) | 390, 1047, 1342, 1670, 2400, 2805 |
| RsaNI | GTAC | 6 cut(s) | 389, 1046, 1341, 1669, 2399, 2804 |
| RseI | CAYNNNNRTG | 1 cut(s) | 2291 |
| SacI | GAGCTC | 1 cut(s) | 3273 |
| SapI | GCTCTTC | 2 cut(s) | 2434, 3261 |
| Sau3AI | GATC | 5 cut(s) | 895, 1405, 1492, 1867, 3667 |
| Sau96I | GGNCC | 7 cut(s) | 760, 1831, 2456, 2539, 2706, 3635, 3769 |
| ScaI | AGTACT | 2 cut(s) | 1670, 2805 |
| SchI | GAGTC | 5 cut(s) | 368, 581, 2111, 2737, 3767 |
| ScrFI | CCNGG | 5 cut(s) | 530, 2184, 2319, 2460, 3728 |
| SduI | GDGCHC | 5 cut(s) | 83, 3059, 3273, 3551, 4002 |
| SexAI | ACCWGGT | 1 cut(s) | 528 |
| SfaNI | GCATC | 5 cut(s) | 1732, 1888, 2426, 2736, 2998 |
| SfcI | CTRYAG | 3 cut(s) | 329, 2112, 2487 |
| SinI | GGWCC | 3 cut(s) | 760, 2539, 3635 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 2291 |
| SmlI | CTYRAG | 2 cut(s) | 155, 2374 |
| SmoI | CTYRAG | 2 cut(s) | 155, 2374 |
| SpeI | ACTAGT | 1 cut(s) | 3503 |
| SphI | GCATGC | 1 cut(s) | 3391 |
| SseBI | AGGCCT | 2 cut(s) | 287, 832 |
| SspI | AATATT | 3 cut(s) | 346, 1218, 2581 |
| SspMI | CTAG | 9 cut(s) | 468, 1032, 2142, 2699, 2742, 2807, 2933, 3504, 3920 |
| SstI | GAGCTC | 1 cut(s) | 3273 |
| StuI | AGGCCT | 2 cut(s) | 287, 832 |
| StyD4I | CCNGG | 5 cut(s) | 528, 2182, 2317, 2458, 3726 |
| StyI | CCWWGG | 2 cut(s) | 2631, 2709 |
| TaiI | ACGT | 7 cut(s) | 379, 1333, 1627, 2272, 2434, 3484, 3984 |
| TaqI | TCGA | 4 cut(s) | 539, 2337, 3373, 3756 |
| TaqII | GACCGA | 3 cut(s) | 3528, 3618, 3705 |
| TatI | WGTACW | 3 cut(s) | 1668, 2398, 2803 |
| TauI | GCSGC | 4 cut(s) | 2042, 2228, 3770, 3948 |
| TfiI | GAWTC | 7 cut(s) | 1813, 1910, 1955, 2659, 3823, 3892, 4011 |
| TseFI | GTSAC | 3 cut(s) | 455, 1645, 2028 |
| Tsp45I | GTSAC | 3 cut(s) | 455, 1645, 2028 |
| TspGWI | ACGGA | 4 cut(s) | 773, 1426, 2969, 3007 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 3632, 4023 |
| VneI | GTGCAC | 1 cut(s) | 3547 |
| VpaK11BI | GGWCC | 3 cut(s) | 760, 2539, 3635 |
| VspI | ATTAAT | 1 cut(s) | 1797 |
| XapI | RAATTY | 4 cut(s) | 1199, 1765, 2987, 3065 |
| XceI | RCATGY | 5 cut(s) | 2198, 3221, 3391, 3493, 3665 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1453, 2143 |
| XmiI | GTMKAC | 3 cut(s) | 2115, 3085, 3456 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1324, 2065, 2975 |
| XspI | CTAG | 9 cut(s) | 468, 1032, 2142, 2699, 2742, 2807, 2933, 3504, 3920 |
| ZraI | GACGTC | 1 cut(s) | 3482 |
| ZrmI | AGTACT | 2 cut(s) | 1670, 2805 |