Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000599

Physical Location & Seq

Genomic Coordinates Forward (+)

38978321 .. 38982390

Gene Structure 4070 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19706

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1467 bp

ATGGTACAAAAGAACACGTCTACTTGTTCGGACTCCTCTACAATGCTACTTTGTGGCACAAGGCCTCCTGATATTCATAACAACTCTTTACCAGAAGATGGAACTTCTAGCATGGATCATAACTGGAGTGAAAGCATAAACTTCATGGATAAAGTAGAAGAGAGTCCTGATTCAAGTTACAGCTCAAAGCTTCCTGCACCAAGTATTCTGAAAGATCCGAAAAATAGGCGGCATGTATCAAGACCTCCTGAAGTGGTAAAGGCAAGGAGTGATATTCCTATTATAATGATGGAGCAAGAGATAATGGAGGCCATAAATGAAAATTCCACTGTTATTATACGCGGAGAGACTGGATGTGGTAAAACAACCCAAGTTCCACAGGTGTTTCTTTATGAAGTTGGCATTGGTTCAAGTGTGTCTCCTCTTGGAAGTGGTATCCTTGGTGTTACTCAACCCCGTCGCATTGCAGTCTATGCTACTGCTAGTCGTGTGGCATATGAGCTTGGTGTACGCGTGGGTGAGGAGGTTGGGTATCAAGTTAGATATGACAAAAAGATAGGCAAAAGTTGCTCCATCAACTTCATGACGGATGGAATATTGCTACGAGAACTCCAGGGTGATTTTTGGTTGAAGAGATACTCTGTTATAATTCTTGATGAGGTGCATGAGCGGAACTTGAGCACAGATACACTCATTGGAATGCTTTCACGTGTTATCATTTGTCGTCAGAAAGAGTATGAACGTCAGCAGGAGTTTTTGCAGCAGTACTCACATTTAGGAATATCTATAGATCGGGAGAAACTTGTTTTTCCACTGAAGCTTGTGCTTATGAGTGCTACCATGCCAGTGGAAGACTTCATTTCTTATAGGAAGCTGTTTCCTGACCCCCCACAAGAGATAAATGTTTTGTCTAGACAATTTAAAGTAGACATTCAGTTCTCAACGACAACTAAAGCTGATTATACTAAGGAAGCATGTAAAAAGGTCTTGGAAATTCACAAGAATATGCCACAAGGAGGCATACTTGTGTTTGTCACTGGGTACTGGGAAGTGGAGGTATTGTGTAAACAGCTACGTAGAGCTTCAAGGGAACTGACTATGAAAATAAAAAAAGGGTGTTGTGTGATGGAAGGTTCTGTAATAAACTCTGTTGGAGAGATAAATATGAAGGAGAACAGCGAAGCATTTCATTCAGCCAACCATCAGAATGATGTATTTAGTTACACTGATGAAGATCAGTGCGAGGTAGATGACGAGTTTGGTTCTTCATATGATACAGAAACAGAGAGTGAGCTGGAAATTATTGGTGACGATGGGGATTCATTGTGTCAAGATACCCCAGAAGTCTATGGTGAGGTTGCACAGATTTTAGGAGAGAACGTGAGCATTGCATCACTGAAAGCCTCTTTTGAATCATTGGCTGGAAAATCTTCTTCAGATTCTACTTGCAAAGAACCTATTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

488

Amino Acids

54.61

Weight (kDa)

4.96

Isoelectric Point (pI)

42.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	99 - 282	2.1e-07	DEAD/DEAH box helicase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33390 AT1G33390
fragaria_vesca	FvH4_3g40090 FvH4_3g40090 FvH4_3g40090 FvH4_6g48600
malus_domestica	MD04G1241500.v1.1 MD05G1017800.v1.1
prunus_persica	Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1
pyrus_communis	pycom04g21310 pycom05g01000 pycom05g01050 pycom11g20470
rosa_chinensis	RchiOBHm_Chr2g0168421 RchiOBHm_Chr2g0168431 RchiOBHm_Chr2g0168441 RchiOBHm_Chr2g0168451 RchiOBHm_Chr2g0168461 RchiOBHm_Chr4g0407811 RchiOBHm_Chr7g0220161 RchiOBHm_Chr7g0220171 RchiOBHm_Chr7g0220481
rosa_laevigata	RLG00000002253 RLG00000008696 RLG00000021781
rosa_multiflora	Rmu_co8232135.1_g000001 Rmu_sc0000966.1_g000007 Rmu_sc0003573.1_g000032 Rmu_sc0006361.1_g000012 Rmu_sc0006361.1_g000013 Rmu_sc0012607.1_g000001 Rmu_sc0016657.1_g000009
rosa_roxburghii	Rroxscaffold_2G00083000 Rroxscaffold_2G00083010 Rroxscaffold_3G00239750 Rroxscaffold_5G00352370
rosa_rugosa	Rorug02G0533800 Rorug02G0533800 Rorug04G0081400 Rorug07G0189900 Rorug07G0190000
rosa_samantha	Rh2AG603500 Rh2AG603700 Rh2BG616600 Rh2BG616700 Rh2BG616800 Rh2CG584500 Rh2CG584600 Rh2CG584700 Rh2DG627100 Rh2DG627200 Rh4AG146500 Rh4BG144000 Rh4CG153000 Rh4DG140500 Rh7AG332900 Rh7BG324300 Rh7BG324400 Rh7BG324500 Rh7CG350400 Rh7DG329000
rosa_wichuraiana	Rw0G022710 Rw2G050050 Rw4G011990 Rw7G028060 Rw7G028070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	284, 647
AccB7I	CCANNNNNTGG	1 cut(s)	98
AccBSI	CCGCTC	1 cut(s)	670
AccI	GTMKAC	2 cut(s)	20, 927
AccII	CGCG	2 cut(s)	342, 513
AciI	CCGC	3 cut(s)	229, 342, 670
AclWI	GGATC	2 cut(s)	123, 209
AcsI	RAATTY	2 cut(s)	322, 993
AcuI	CTGAAG	3 cut(s)	270, 836, 1419
AcvI	CACGTG	1 cut(s)	710
AfaI	GTAC	4 cut(s)	6, 510, 767, 1043
AfiI	CCNNNNNNNGG	2 cut(s)	98, 1016
AflIII	ACRYGT	3 cut(s)	15, 511, 709
AgsI	TTSAA	5 cut(s)	174, 411, 631, 1086, 1412
AjiI	CACGTC	1 cut(s)	18
AjnI	CCWGG	1 cut(s)	612
AjuI	GAANNNNNNNTTGG	2 cut(s)	387, 419
AluBI	AGCT	9 cut(s)	183, 190, 502, 820, 874, 956, 1072, 1082, 1294
AluI	AGCT	9 cut(s)	183, 190, 502, 820, 874, 956, 1072, 1082, 1294
Alw21I	GWGCWC	1 cut(s)	683
Alw26I	GTCTC	2 cut(s)	341, 423
AlwI	GGATC	2 cut(s)	123, 209
AoxI	GGCC	2 cut(s)	62, 309
ApeKI	GCWGC	1 cut(s)	760
ApoI	RAATTY	2 cut(s)	322, 993
Asp700I	GAANNNNTTC	3 cut(s)	703, 1185, 1429
AsuHPI	GGTGA	4 cut(s)	530, 629, 1319, 1364
BbrPI	CACGTG	1 cut(s)	710
BbsI	GAAGAC	1 cut(s)	858
Bbv12I	GWGCWC	1 cut(s)	683
BbvI	GCAGC	1 cut(s)	772
BccI	CCATC	7 cut(s)	92, 283, 581, 584, 1120, 1209, 1307
BciT130I	CCWGG	1 cut(s)	614
BciVI	GTATCC	1 cut(s)	446
BcoDI	GTCTC	2 cut(s)	341, 423
BfaI	CTAG	3 cut(s)	108, 483, 912
BfmI	CTRYAG	1 cut(s)	786
BfuI	GTATCC	1 cut(s)	446
BisI	GCNGC	2 cut(s)	230, 761
BlsI	GCNGC	2 cut(s)	231, 762
BmcAI	AGTACT	1 cut(s)	767
Bme1390I	CCNGG	1 cut(s)	614
BmgBI	CACGTC	1 cut(s)	18
BmrFI	CCNGG	1 cut(s)	614
BmrI	ACTGGG	2 cut(s)	1047, 1054
BmsI	GCATC	1 cut(s)	1400
BmuI	ACTGGG	2 cut(s)	1047, 1054
BpiI	GAAGAC	1 cut(s)	858
BpmI	CTGGAG	2 cut(s)	145, 596
BpuEI	CTTGAG	1 cut(s)	697
BsaAI	YACGTR	2 cut(s)	710, 1076
BsaBI	GATNNNNATC	1 cut(s)	1233
BsaJI	CCNNGG	2 cut(s)	439, 613
Bsc4I	CCNNNNNNNGG	2 cut(s)	98, 1016
Bse1I	ACTGG	5 cut(s)	128, 355, 845, 1042, 1049
Bse3DI	GCAATG	2 cut(s)	462, 1386
Bse8I	GATNNNNATC	1 cut(s)	1233
BseBI	CCWGG	1 cut(s)	614
BseDI	CCNNGG	2 cut(s)	439, 613
BseGI	GGATG	2 cut(s)	359, 595
BseJI	GATNNNNATC	1 cut(s)	1233
BseLI	CCNNNNNNNGG	2 cut(s)	98, 1016
BseMI	GCAATG	2 cut(s)	462, 1386
BseNI	ACTGG	5 cut(s)	128, 355, 845, 1042, 1049
BseRI	GAGGAG	3 cut(s)	25, 411, 536
BseXI	GCAGC	1 cut(s)	772
BsgI	GTGCAG	1 cut(s)	180
Bsh1236I	CGCG	2 cut(s)	342, 513
BshFI	GGCC	2 cut(s)	64, 311
BsiHKAI	GWGCWC	1 cut(s)	683
BslI	CCNNNNNNNGG	2 cut(s)	98, 1016
BsmAI	GTCTC	2 cut(s)	341, 423
BsmI	GAATGC	1 cut(s)	705
BsnI	GGCC	2 cut(s)	64, 311
Bsp1286I	GDGCHC	1 cut(s)	683
Bsp143I	GATC	4 cut(s)	115, 214, 790, 1234
BspACI	CCGC	3 cut(s)	229, 342, 670
BspANI	GGCC	2 cut(s)	64, 311
BspFNI	CGCG	2 cut(s)	342, 513
BspHI	TCATGA	2 cut(s)	582, 1463
BspPI	GGATC	2 cut(s)	123, 209
BsrBI	CCGCTC	1 cut(s)	670
BsrDI	GCAATG	2 cut(s)	462, 1386
BsrI	ACTGG	5 cut(s)	128, 355, 845, 1042, 1049
BssECI	CCNNGG	2 cut(s)	439, 613
BssMI	GATC	4 cut(s)	115, 214, 790, 1234
BssT1I	CCWWGG	1 cut(s)	439
Bst2UI	CCWGG	1 cut(s)	614
Bst4CI	ACNGT	1 cut(s)	331
Bst6I	CTCTTC	2 cut(s)	153, 626
BstAPI	GCANNNNNTGC	2 cut(s)	473, 567
BstBAI	YACGTR	2 cut(s)	710, 1076
BstDEI	CTNAG	1 cut(s)	966
BstF5I	GGATG	2 cut(s)	359, 595
BstFNI	CGCG	2 cut(s)	342, 513
BstKTI	GATC	4 cut(s)	118, 217, 793, 1237
BstMAI	GTCTC	2 cut(s)	341, 423
BstMBI	GATC	4 cut(s)	115, 214, 790, 1234
BstMWI	GCNNNNNNNGC	2 cut(s)	473, 567
BstNI	CCWGG	1 cut(s)	614
BstNSI	RCATGY	2 cut(s)	236, 978
BstSCI	CCNGG	1 cut(s)	612
BstSFI	CTRYAG	1 cut(s)	786
BstSNI	TACGTA	1 cut(s)	1076
BstUI	CGCG	2 cut(s)	342, 513
BstV1I	GCAGC	1 cut(s)	772
BstV2I	GAAGAC	1 cut(s)	858
BstX2I	RGATCY	1 cut(s)	214
BstXI	CCANNNNNNTGG	1 cut(s)	847
BstYI	RGATCY	1 cut(s)	214
BsuI	GTATCC	1 cut(s)	446
BsuRI	GGCC	2 cut(s)	64, 311
BtrI	CACGTC	1 cut(s)	18
BtsCI	GGATG	2 cut(s)	359, 595
BtsIMutI	CAGTG	7 cut(s)	327, 812, 852, 1035, 1224, 1244, 1394
CciI	TCATGA	2 cut(s)	582, 1463
Csp6I	GTAC	4 cut(s)	5, 509, 766, 1042
CviAII	CATG	8 cut(s)	112, 145, 233, 583, 665, 841, 975, 1464
CviQI	GTAC	4 cut(s)	5, 509, 766, 1042
DdeI	CTNAG	1 cut(s)	966
DpnI	GATC	4 cut(s)	117, 216, 792, 1236
DpnII	GATC	4 cut(s)	115, 214, 790, 1234
DraI	TTTAAA	1 cut(s)	922
Eam1104I	CTCTTC	2 cut(s)	153, 626
EarI	CTCTTC	2 cut(s)	153, 626
Eco105I	TACGTA	1 cut(s)	1076
Eco130I	CCWWGG	1 cut(s)	439
Eco147I	AGGCCT	1 cut(s)	64
Eco57I	CTGAAG	3 cut(s)	270, 836, 1419
Eco72I	CACGTG	1 cut(s)	710
EcoRII	CCWGG	1 cut(s)	612
EcoT14I	CCWWGG	1 cut(s)	439
ErhI	CCWWGG	1 cut(s)	439
FaeI	CATG	8 cut(s)	115, 148, 236, 586, 668, 844, 978, 1467
FatI	CATG	8 cut(s)	111, 144, 232, 582, 664, 840, 974, 1463
FauNDI	CATATG	2 cut(s)	496, 1270
FblI	GTMKAC	2 cut(s)	20, 927
Fnu4HI	GCNGC	2 cut(s)	230, 761
FokI	GGATG	2 cut(s)	366, 602
Fsp4HI	GCNGC	2 cut(s)	230, 761
FspBI	CTAG	3 cut(s)	108, 483, 912
GluI	GCNGC	2 cut(s)	230, 761
GsuI	CTGGAG	2 cut(s)	145, 596
HaeIII	GGCC	2 cut(s)	64, 311
Hin1II	CATG	8 cut(s)	115, 148, 236, 586, 668, 844, 978, 1467
HindIII	AAGCTT	2 cut(s)	188, 818
HinfI	GANTC	6 cut(s)	32, 163, 170, 1319, 1412, 1439
HphI	GGTGA	4 cut(s)	530, 629, 1319, 1364
Hpy166II	GTNNAC	4 cut(s)	21, 509, 928, 1067
Hpy188I	TCNGA	6 cut(s)	31, 210, 219, 729, 1206, 1438
Hpy8I	GTNNAC	4 cut(s)	21, 509, 928, 1067
Hpy99I	CGWCG	1 cut(s)	462
HpyAV	CCTTC	2 cut(s)	1124, 1162
HpyCH4III	ACNGT	1 cut(s)	331
HpyCH4IV	ACGT	5 cut(s)	17, 709, 742, 1075, 1380
HpyCH4V	TGCA	7 cut(s)	197, 467, 664, 760, 1361, 1391, 1449
HpyF10VI	GCNNNNNNNGC	2 cut(s)	473, 567
HpyF3I	CTNAG	1 cut(s)	966
HpySE526I	ACGT	5 cut(s)	17, 709, 742, 1075, 1380
Hsp92II	CATG	8 cut(s)	115, 148, 236, 586, 668, 844, 978, 1467
Kzo9I	GATC	4 cut(s)	115, 214, 790, 1234
LmnI	GCTCC	2 cut(s)	292, 575
Lsp1109I	GCAGC	1 cut(s)	772
LweI	GCATC	1 cut(s)	1400
MaeI	CTAG	3 cut(s)	108, 483, 912
MaeII	ACGT	5 cut(s)	17, 709, 742, 1075, 1380
MaeIII	GTNAC	5 cut(s)	176, 445, 1033, 1220, 1307
MalI	GATC	4 cut(s)	117, 216, 792, 1236
MbiI	CCGCTC	1 cut(s)	670
MboI	GATC	4 cut(s)	115, 214, 790, 1234
MboII	GAAGA	8 cut(s)	107, 170, 643, 863, 1244, 1257, 1422, 1425
MflI	RGATCY	1 cut(s)	214
MhlI	GDGCHC	1 cut(s)	683
MluCI	AATT	5 cut(s)	322, 648, 917, 993, 1299
MluI	ACGCGT	1 cut(s)	511
MlyI	GAGTC	2 cut(s)	26, 172
MmeI	TCCRAC	1 cut(s)	1132
MroXI	GAANNNNTTC	3 cut(s)	703, 1185, 1429
MseI	TTAA	1 cut(s)	921
MslI	CAYNNNNRTG	4 cut(s)	698, 845, 1025, 1206
MspR9I	CCNGG	1 cut(s)	614
Mva1269I	GAATGC	1 cut(s)	705
MvaI	CCWGG	1 cut(s)	614
MvnI	CGCG	2 cut(s)	342, 513
MwoI	GCNNNNNNNGC	2 cut(s)	473, 567
NdeI	CATATG	2 cut(s)	496, 1270
NdeII	GATC	4 cut(s)	115, 214, 790, 1234
NlaIII	CATG	8 cut(s)	115, 148, 236, 586, 668, 844, 978, 1467
NmuCI	GTSAC	2 cut(s)	1033, 1307
NspI	RCATGY	2 cut(s)	236, 978
PagI	TCATGA	2 cut(s)	582, 1463
PceI	AGGCCT	1 cut(s)	64
PctI	GAATGC	1 cut(s)	705
PdmI	GAANNNNTTC	3 cut(s)	703, 1185, 1429
PfeI	GAWTC	4 cut(s)	170, 1319, 1412, 1439
PflMI	CCANNNNNTGG	1 cut(s)	98
PkrI	GCNGC	2 cut(s)	231, 762
PleI	GAGTC	2 cut(s)	26, 171
PmaCI	CACGTG	1 cut(s)	710
PmlI	CACGTG	1 cut(s)	710
PpsI	GAGTC	2 cut(s)	26, 171
Ppu21I	YACGTR	2 cut(s)	710, 1076
PsiI	TTATAA	2 cut(s)	284, 647
Psp6I	CCWGG	1 cut(s)	612
PspCI	CACGTG	1 cut(s)	710
PspGI	CCWGG	1 cut(s)	612
PsuI	RGATCY	1 cut(s)	214
RsaI	GTAC	4 cut(s)	6, 510, 767, 1043
RsaNI	GTAC	4 cut(s)	5, 509, 766, 1042
RseI	CAYNNNNRTG	4 cut(s)	698, 845, 1025, 1206
SaqAI	TTAA	1 cut(s)	921
SatI	GCNGC	2 cut(s)	230, 761
Sau3AI	GATC	4 cut(s)	115, 214, 790, 1234
ScaI	AGTACT	1 cut(s)	767
SchI	GAGTC	2 cut(s)	26, 172
ScrFI	CCNGG	1 cut(s)	614
SduI	GDGCHC	1 cut(s)	683
SfaNI	GCATC	1 cut(s)	1400
SfcI	CTRYAG	1 cut(s)	786
SmiMI	CAYNNNNRTG	4 cut(s)	698, 845, 1025, 1206
SmlI	CTYRAG	1 cut(s)	676
SmoI	CTYRAG	1 cut(s)	676
SnaBI	TACGTA	1 cut(s)	1076
Sse9I	AATT	5 cut(s)	322, 648, 917, 993, 1299
SseBI	AGGCCT	1 cut(s)	64
SsiI	CCGC	3 cut(s)	229, 342, 670
SspI	AATATT	1 cut(s)	597
SspMI	CTAG	3 cut(s)	108, 483, 912
StuI	AGGCCT	1 cut(s)	64
StyD4I	CCNGG	1 cut(s)	612
StyI	CCWWGG	1 cut(s)	439
TaaI	ACNGT	1 cut(s)	331
TaiI	ACGT	5 cut(s)	20, 712, 745, 1078, 1383
TasI	AATT	5 cut(s)	322, 648, 917, 993, 1299
TatI	WGTACW	1 cut(s)	765
TauI	GCSGC	1 cut(s)	232
TfiI	GAWTC	4 cut(s)	170, 1319, 1412, 1439
Tru1I	TTAA	1 cut(s)	921
Tru9I	TTAA	1 cut(s)	921
TscAI	CASTG	7 cut(s)	334, 819, 852, 1042, 1231, 1244, 1401
TseFI	GTSAC	2 cut(s)	1033, 1307
TseI	GCWGC	1 cut(s)	760
Tsp45I	GTSAC	2 cut(s)	1033, 1307
TspGWI	ACGGA	1 cut(s)	602
TspRI	CASTG	7 cut(s)	334, 819, 852, 1042, 1231, 1244, 1401
Van91I	CCANNNNNTGG	1 cut(s)	98
XapI	RAATTY	2 cut(s)	322, 993
XbaI	TCTAGA	1 cut(s)	911
XceI	RCATGY	2 cut(s)	236, 978
XmiI	GTMKAC	2 cut(s)	20, 927
XmnI	GAANNNNTTC	3 cut(s)	703, 1185, 1429
XspI	CTAG	3 cut(s)	108, 483, 912
ZrmI	AGTACT	1 cut(s)	767

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.