Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000599

Physical Location & Seq

Genomic Coordinates Reverse (-)

16041818 .. 16042591

Gene Structure 774 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0190000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGGGTCATCACTGTGGGTTACTAGCAATCATGACAAAGGGGAAAACCTTCCAGCAATTTCGACACTCTCGTTCATGGTGTTTGCTCTGCTCTGGTTCTTGTGGATTTGGAAAAAACCGAACAGGAACCTTACACCTCCATTGCCACCAGGCCCTCGTGGTCTGCCACTACTTGGATATCTTCCATTTCTTGGTGCAAACCTCCACCTAGAATTGACAGACATGGCAAGGGTTTATGGCCCAATTTACAAACTTCAACTTGGTACCAAGTTGTGCATGGTGGTGAGCTCACCTGAGCTTGTGAAACAAGTGGTTCGTGACCATGACACAACATTTTCCAACCGTGATCCTACAGTTGCTGCTCTAATTGCCTCATATGGAGCAACCGACATCGCGTTTGGATCCTATGGTTCAGATTGGATGAAGATGCGCAAGGTGTTTGTGGGTCTGATGCTAAGCAAAACCAACCTTGATGATTGTTATGCTCTGAGAAAAGAGGAGGTGCACAAGTCGATCAGTCAGATATATCATGACAAAATTGGAACCCCAACTGATTTGGGCCAGTTTACATTTTCCACAGCAACCAACACAATCATGCGTATGCTATGGGGTGCCACTCCACAAGGAGAGAAGGGGAGTGACTATGGGGAACAGTATAGAAAAGTGGTGGCAGAAATGATTGATCTACTTGGGAAACCAAACATCTCGGACTATTTTCCTGCGCTTGCAAGGTTTGACATACAAGGAATTGAGAGGCAAGCAAAGAAGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

257

Amino Acids

28.81

Weight (kDa)

8.92

Isoelectric Point (pI)

28.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	49 - 256	5.2e-25	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33390 AT1G33390
fragaria_vesca	FvH4_3g40090 FvH4_3g40090 FvH4_3g40090 FvH4_6g48600
malus_domestica	MD04G1241500.v1.1 MD05G1017800.v1.1
prunus_persica	Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1
pyrus_communis	pycom04g21310 pycom05g01000 pycom05g01050 pycom11g20470
rosa_chinensis	RchiOBHm_Chr2g0168421 RchiOBHm_Chr2g0168431 RchiOBHm_Chr2g0168441 RchiOBHm_Chr2g0168451 RchiOBHm_Chr2g0168461 RchiOBHm_Chr4g0407811 RchiOBHm_Chr7g0220161 RchiOBHm_Chr7g0220171 RchiOBHm_Chr7g0220481
rosa_laevigata	RLG00000002253 RLG00000008696 RLG00000021781
rosa_multiflora	Rmu_co8232135.1_g000001 Rmu_sc0000966.1_g000007 Rmu_sc0003573.1_g000032 Rmu_sc0006361.1_g000012 Rmu_sc0006361.1_g000013 Rmu_sc0012607.1_g000001 Rmu_sc0016657.1_g000009
rosa_roxburghii	Rroxscaffold_2G00083000 Rroxscaffold_2G00083010 Rroxscaffold_3G00239750 Rroxscaffold_5G00352370
rosa_rugosa	Rorug02G0533800 Rorug02G0533800 Rorug04G0081400 Rorug07G0189900 Rorug07G0190000
rosa_samantha	Rh2AG603500 Rh2AG603700 Rh2BG616600 Rh2BG616700 Rh2BG616800 Rh2CG584500 Rh2CG584600 Rh2CG584700 Rh2DG627100 Rh2DG627200 Rh4AG146500 Rh4BG144000 Rh4CG153000 Rh4DG140500 Rh7AG332900 Rh7BG324300 Rh7BG324400 Rh7BG324500 Rh7CG350400 Rh7DG329000
rosa_wichuraiana	Rw0G022710 Rw2G050050 Rw4G011990 Rw7G028060 Rw7G028070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	431
Acc65I	GGTACC	1 cut(s)	263
AccB1I	GGYRCC	2 cut(s)	263, 611
AccB7I	CCANNNNNTGG	2 cut(s)	173, 191
AccII	CGCG	1 cut(s)	395
AclWI	GGATC	3 cut(s)	341, 396, 409
AfaI	GTAC	1 cut(s)	265
AfiI	CCNNNNNNNGG	2 cut(s)	173, 191
AgsI	TTSAA	1 cut(s)	257
AjnI	CCWGG	1 cut(s)	148
AluBI	AGCT	2 cut(s)	288, 298
AluI	AGCT	2 cut(s)	288, 298
Alw21I	GWGCWC	2 cut(s)	290, 507
Alw44I	GTGCAC	1 cut(s)	503
AlwI	GGATC	3 cut(s)	341, 396, 409
AlwNI	CAGNNNCTG	1 cut(s)	359
AoxI	GGCC	3 cut(s)	151, 238, 559
ApaLI	GTGCAC	1 cut(s)	503
ApeKI	GCWGC	1 cut(s)	359
ArsI	GACNNNNNNTTYG	2 cut(s)	380, 412
Asp700I	GAANNNNTTC	1 cut(s)	48
Asp718I	GGTACC	1 cut(s)	263
AspLEI	GCGC	2 cut(s)	432, 724
AspS9I	GGNCC	3 cut(s)	152, 239, 559
AsuHPI	GGTGA	2 cut(s)	282, 295
BaeGI	GKGCMC	1 cut(s)	507
BamHI	GGATCC	1 cut(s)	401
BanI	GGYRCC	2 cut(s)	263, 611
BanII	GRGCYC	1 cut(s)	290
BauI	CACGAG	1 cut(s)	156
Bbv12I	GWGCWC	2 cut(s)	290, 507
BbvI	GCAGC	1 cut(s)	346
BciT130I	CCWGG	1 cut(s)	150
BfaI	CTAG	2 cut(s)	24, 209
BfmI	CTRYAG	1 cut(s)	351
BisI	GCNGC	1 cut(s)	360
BlpI	GCTNAGC	1 cut(s)	455
BlsI	GCNGC	1 cut(s)	361
Bme1390I	CCNGG	1 cut(s)	150
BmgT120I	GGNCC	3 cut(s)	152, 239, 559
BmiI	GGNNCC	5 cut(s)	128, 265, 403, 544, 613
BmrFI	CCNGG	1 cut(s)	150
BmsI	GCATC	2 cut(s)	417, 441
Bpu10I	CCTNAGC	1 cut(s)	294
Bpu1102I	GCTNAGC	1 cut(s)	455
Bsc4I	CCNNNNNNNGG	2 cut(s)	173, 191
Bse1I	ACTGG	1 cut(s)	562
Bse3DI	GCAATG	1 cut(s)	140
BseBI	CCWGG	1 cut(s)	150
BseGI	GGATG	1 cut(s)	426
BseLI	CCNNNNNNNGG	2 cut(s)	173, 191
BseMI	GCAATG	1 cut(s)	140
BseMII	CTCAG	2 cut(s)	285, 479
BseNI	ACTGG	1 cut(s)	562
BseRI	GAGGAG	1 cut(s)	512
BseSI	GKGCMC	1 cut(s)	507
BseXI	GCAGC	1 cut(s)	346
Bsh1236I	CGCG	1 cut(s)	395
BshFI	GGCC	3 cut(s)	153, 240, 561
BshNI	GGYRCC	2 cut(s)	263, 611
BsiHKAI	GWGCWC	2 cut(s)	290, 507
BslI	CCNNNNNNNGG	2 cut(s)	173, 191
BsnI	GGCC	3 cut(s)	153, 240, 561
Bsp1286I	GDGCHC	2 cut(s)	290, 507
Bsp143I	GATC	4 cut(s)	346, 401, 513, 682
Bsp1720I	GCTNAGC	1 cut(s)	455
BspANI	GGCC	3 cut(s)	153, 240, 561
BspCNI	CTCAG	2 cut(s)	286, 480
BspFNI	CGCG	1 cut(s)	395
BspHI	TCATGA	2 cut(s)	31, 529
BspLI	GGNNCC	5 cut(s)	128, 265, 403, 544, 613
BspPI	GGATC	3 cut(s)	341, 396, 409
BspT107I	GGYRCC	2 cut(s)	263, 611
BsrDI	GCAATG	1 cut(s)	140
BsrI	ACTGG	1 cut(s)	562
BssMI	GATC	4 cut(s)	346, 401, 513, 682
BssSI	CACGAG	1 cut(s)	156
Bst2BI	CACGAG	1 cut(s)	156
Bst2UI	CCWGG	1 cut(s)	150
Bst4CI	ACNGT	4 cut(s)	15, 344, 355, 654
BstC8I	GCNNGC	2 cut(s)	726, 759
BstDEI	CTNAG	3 cut(s)	294, 455, 488
BstF5I	GGATG	1 cut(s)	426
BstFNI	CGCG	1 cut(s)	395
BstHHI	GCGC	2 cut(s)	432, 724
BstKTI	GATC	4 cut(s)	349, 404, 516, 685
BstMBI	GATC	4 cut(s)	346, 401, 513, 682
BstMWI	GCNNNNNNNGC	1 cut(s)	368
BstNI	CCWGG	1 cut(s)	150
BstSCI	CCNGG	1 cut(s)	148
BstSFI	CTRYAG	1 cut(s)	351
BstSLI	GKGCMC	1 cut(s)	507
BstUI	CGCG	1 cut(s)	395
BstV1I	GCAGC	1 cut(s)	346
BstX2I	RGATCY	1 cut(s)	401
BstYI	RGATCY	1 cut(s)	401
BsuRI	GGCC	3 cut(s)	153, 240, 561
BtgZI	GCGATG	1 cut(s)	376
BtsCI	GGATG	1 cut(s)	426
BtsIMutI	CAGTG	1 cut(s)	11
Cac8I	GCNNGC	2 cut(s)	726, 759
CaiI	CAGNNNCTG	1 cut(s)	359
CciI	TCATGA	2 cut(s)	31, 529
CfoI	GCGC	2 cut(s)	432, 724
Cfr13I	GGNCC	3 cut(s)	152, 239, 559
Csp6I	GTAC	1 cut(s)	264
CviAII	CATG	7 cut(s)	32, 76, 223, 277, 323, 530, 595
CviJI	RGCY	5 cut(s)	153, 240, 288, 298, 561
CviKI_1	RGCY	5 cut(s)	153, 240, 288, 298, 561
CviQI	GTAC	1 cut(s)	264
DdeI	CTNAG	3 cut(s)	294, 455, 488
DpnI	GATC	4 cut(s)	348, 403, 515, 684
DpnII	GATC	4 cut(s)	346, 401, 513, 682
Ecl136II	GAGCTC	1 cut(s)	288
Eco24I	GRGCYC	1 cut(s)	290
Eco32I	GATATC	1 cut(s)	179
Eco53kI	GAGCTC	1 cut(s)	288
EcoICRI	GAGCTC	1 cut(s)	288
EcoO109I	RGGNCCY	1 cut(s)	152
EcoRII	CCWGG	1 cut(s)	148
EcoRV	GATATC	1 cut(s)	179
EcoT38I	GRGCYC	1 cut(s)	290
FaeI	CATG	7 cut(s)	35, 79, 226, 280, 326, 533, 598
FatI	CATG	7 cut(s)	31, 75, 222, 276, 322, 529, 594
FauNDI	CATATG	1 cut(s)	376
Fnu4HI	GCNGC	1 cut(s)	360
FokI	GGATG	1 cut(s)	433
FriOI	GRGCYC	1 cut(s)	290
Fsp4HI	GCNGC	1 cut(s)	360
FspBI	CTAG	2 cut(s)	24, 209
FspI	TGCGCA	1 cut(s)	431
GlaI	GCGC	2 cut(s)	431, 723
GluI	GCNGC	1 cut(s)	360
HaeIII	GGCC	3 cut(s)	153, 240, 561
HhaI	GCGC	2 cut(s)	432, 724
Hin1II	CATG	7 cut(s)	35, 79, 226, 280, 326, 533, 598
Hin6I	GCGC	2 cut(s)	430, 722
HinP1I	GCGC	2 cut(s)	430, 722
HphI	GGTGA	2 cut(s)	282, 295
Hpy166II	GTNNAC	2 cut(s)	505, 567
Hpy188I	TCNGA	5 cut(s)	415, 450, 489, 522, 709
Hpy188III	TCNNGA	3 cut(s)	32, 317, 530
Hpy8I	GTNNAC	2 cut(s)	505, 567
HpyAV	CCTTC	3 cut(s)	59, 625, 760
HpyCH4III	ACNGT	4 cut(s)	15, 344, 355, 654
HpyCH4V	TGCA	4 cut(s)	197, 276, 505, 728
HpyF10VI	GCNNNNNNNGC	1 cut(s)	368
HpyF3I	CTNAG	3 cut(s)	294, 455, 488
Hsp92II	CATG	7 cut(s)	35, 79, 226, 280, 326, 533, 598
HspAI	GCGC	2 cut(s)	430, 722
KpnI	GGTACC	1 cut(s)	267
Kzo9I	GATC	4 cut(s)	346, 401, 513, 682
LmnI	GCTCC	1 cut(s)	380
LpnPI	CCDG	8 cut(s)	66, 79, 109, 135, 162, 306, 575, 732
Lsp1109I	GCAGC	1 cut(s)	346
LweI	GCATC	2 cut(s)	417, 441
MaeI	CTAG	2 cut(s)	24, 209
MaeIII	GTNAC	3 cut(s)	19, 317, 638
MalI	GATC	4 cut(s)	348, 403, 515, 684
MboI	GATC	4 cut(s)	346, 401, 513, 682
MboII	GAAGA	2 cut(s)	173, 436
MflI	RGATCY	1 cut(s)	401
MhlI	GDGCHC	2 cut(s)	290, 507
MluCI	AATT	6 cut(s)	57, 212, 243, 366, 537, 747
MmeI	TCCRAC	1 cut(s)	363
MnlI	CCTC	7 cut(s)	147, 165, 212, 382, 490, 493, 747
MroXI	GAANNNNTTC	1 cut(s)	48
MseI	TTAA	1 cut(s)	772
MslI	CAYNNNNRTG	4 cut(s)	13, 281, 593, 599
MspR9I	CCNGG	1 cut(s)	150
MvaI	CCWGG	1 cut(s)	150
MvnI	CGCG	1 cut(s)	395
MwoI	GCNNNNNNNGC	1 cut(s)	368
NdeI	CATATG	1 cut(s)	376
NdeII	GATC	4 cut(s)	346, 401, 513, 682
NlaIII	CATG	7 cut(s)	35, 79, 226, 280, 326, 533, 598
NlaIV	GGNNCC	5 cut(s)	128, 265, 403, 544, 613
NmuCI	GTSAC	2 cut(s)	317, 638
NsbI	TGCGCA	1 cut(s)	431
PagI	TCATGA	2 cut(s)	31, 529
PcsI	WCGNNNNNNNCGW	1 cut(s)	68
PdmI	GAANNNNTTC	1 cut(s)	48
PflMI	CCANNNNNTGG	2 cut(s)	173, 191
PkrI	GCNGC	1 cut(s)	361
Psp124BI	GAGCTC	1 cut(s)	290
Psp6I	CCWGG	1 cut(s)	148
PspGI	CCWGG	1 cut(s)	148
PspN4I	GGNNCC	5 cut(s)	128, 265, 403, 544, 613
PspPI	GGNCC	3 cut(s)	152, 239, 559
PstNI	CAGNNNCTG	1 cut(s)	359
PsuI	RGATCY	1 cut(s)	401
RsaI	GTAC	1 cut(s)	265
RsaNI	GTAC	1 cut(s)	264
RseI	CAYNNNNRTG	4 cut(s)	13, 281, 593, 599
SacI	GAGCTC	1 cut(s)	290
SaqAI	TTAA	1 cut(s)	772
SatI	GCNGC	1 cut(s)	360
Sau3AI	GATC	4 cut(s)	346, 401, 513, 682
Sau96I	GGNCC	3 cut(s)	152, 239, 559
ScrFI	CCNGG	1 cut(s)	150
SduI	GDGCHC	2 cut(s)	290, 507
SfaNI	GCATC	2 cut(s)	417, 441
SfcI	CTRYAG	1 cut(s)	351
SmiMI	CAYNNNNRTG	4 cut(s)	13, 281, 593, 599
Sse9I	AATT	6 cut(s)	57, 212, 243, 366, 537, 747
SspMI	CTAG	2 cut(s)	24, 209
SstI	GAGCTC	1 cut(s)	290
StyD4I	CCNGG	1 cut(s)	148
TaaI	ACNGT	4 cut(s)	15, 344, 355, 654
TaqI	TCGA	2 cut(s)	62, 512
TasI	AATT	6 cut(s)	57, 212, 243, 366, 537, 747
Tru1I	TTAA	1 cut(s)	772
Tru9I	TTAA	1 cut(s)	772
TscAI	CASTG	1 cut(s)	18
TseFI	GTSAC	2 cut(s)	317, 638
TseI	GCWGC	1 cut(s)	359
Tsp45I	GTSAC	2 cut(s)	317, 638
TspDTI	ATGAA	2 cut(s)	64, 437
TspRI	CASTG	1 cut(s)	18
Van91I	CCANNNNNTGG	2 cut(s)	173, 191
VneI	GTGCAC	1 cut(s)	503
XcmI	CCANNNNNNNNNTGG	1 cut(s)	274
XmnI	GAANNNNTTC	1 cut(s)	48
XspI	CTAG	2 cut(s)	24, 209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.