Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000599

Physical Location & Seq

Genomic Coordinates Forward (+)

12464815 .. 12466031

Gene Structure 1217 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0081400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGAGGAACAAATTTTGGGCAAACTGCTAGCTAGTGGTCTTTTCATCGCTGCTAGTTATGATTACGATGCTCCTATGGATGAATATGGAATGTTGGGGCAACCTAAATGGGGCCATTTGAAAAGAGAGAGGCATTCAATGCTAGAAGGTGATGGAACAAATGGAAAGCTTCCTTTGAAACCTATTATATACTTCCAAGAGTACCAAGGCAAATGGTTGAGTTCTTGTCTTGATACTTTAAAGATCAACATGGAATTCCTTCAGTGTTGTATATTTCCTCGCTGTACTTTCAGCATGCCAGATGCTGTCTATTGTGCCATGTTTGTGCACACTCTTCATTCCCTTGGGACACCATTTTTTAACACAGTCAACCACATGGATGTTCTTATATGTAGAACCTTACAGTCTATGATATGCTGCTGCACTGAATCTGAAGTTGGTAGATTGGGGAAGTTTCTCTGTGAGACCTTGAAAATTGCTTACTATTGGAAGAGTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

166

Amino Acids

19.04

Weight (kDa)

5.94

Isoelectric Point (pI)

35.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tho2	PF11262	65 - 165	1.7e-30	Transcription factor/nuclear export subunit protein 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33390 AT1G33390
fragaria_vesca	FvH4_3g40090 FvH4_3g40090 FvH4_3g40090 FvH4_6g48600
malus_domestica	MD04G1241500.v1.1 MD05G1017800.v1.1
prunus_persica	Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1
pyrus_communis	pycom04g21310 pycom05g01000 pycom05g01050 pycom11g20470
rosa_chinensis	RchiOBHm_Chr2g0168421 RchiOBHm_Chr2g0168431 RchiOBHm_Chr2g0168441 RchiOBHm_Chr2g0168451 RchiOBHm_Chr2g0168461 RchiOBHm_Chr4g0407811 RchiOBHm_Chr7g0220161 RchiOBHm_Chr7g0220171 RchiOBHm_Chr7g0220481
rosa_laevigata	RLG00000002253 RLG00000008696 RLG00000021781
rosa_multiflora	Rmu_co8232135.1_g000001 Rmu_sc0000966.1_g000007 Rmu_sc0003573.1_g000032 Rmu_sc0006361.1_g000012 Rmu_sc0006361.1_g000013 Rmu_sc0012607.1_g000001 Rmu_sc0016657.1_g000009
rosa_roxburghii	Rroxscaffold_2G00083000 Rroxscaffold_2G00083010 Rroxscaffold_3G00239750 Rroxscaffold_5G00352370
rosa_rugosa	Rorug02G0533800 Rorug02G0533800 Rorug04G0081400 Rorug07G0189900 Rorug07G0190000
rosa_samantha	Rh2AG603500 Rh2AG603700 Rh2BG616600 Rh2BG616700 Rh2BG616800 Rh2CG584500 Rh2CG584600 Rh2CG584700 Rh2DG627100 Rh2DG627200 Rh4AG146500 Rh4BG144000 Rh4CG153000 Rh4DG140500 Rh7AG332900 Rh7BG324300 Rh7BG324400 Rh7BG324500 Rh7CG350400 Rh7DG329000
rosa_wichuraiana	Rw0G022710 Rw2G050050 Rw4G011990 Rw7G028060 Rw7G028070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	12, 254
AcuI	CTGAAG	2 cut(s)	245, 453
AfaI	GTAC	2 cut(s)	203, 286
AfiI	CCNNNNNNNGG	1 cut(s)	110
AgsI	TTSAA	4 cut(s)	121, 138, 178, 472
AjuI	GAANNNNNNNTTGG	2 cut(s)	420, 452
AluBI	AGCT	2 cut(s)	32, 169
AluI	AGCT	2 cut(s)	32, 169
Alw21I	GWGCWC	1 cut(s)	330
Alw26I	GTCTC	1 cut(s)	458
Alw44I	GTGCAC	1 cut(s)	326
AlwNI	CAGNNNCTG	1 cut(s)	305
AoxI	GGCC	1 cut(s)	112
ApaLI	GTGCAC	1 cut(s)	326
ApeKI	GCWGC	3 cut(s)	50, 417, 420
ApoI	RAATTY	2 cut(s)	12, 254
Asp700I	GAANNNNTTC	1 cut(s)	258
AspS9I	GGNCC	1 cut(s)	112
AsuHPI	GGTGA	1 cut(s)	161
AsuNHI	GCTAGC	1 cut(s)	28
BaeGI	GKGCMC	1 cut(s)	330
Bbv12I	GWGCWC	1 cut(s)	330
BbvI	GCAGC	3 cut(s)	37, 404, 407
BccI	CCATC	1 cut(s)	146
BcoDI	GTCTC	1 cut(s)	458
BfaI	CTAG	4 cut(s)	29, 33, 54, 143
BisI	GCNGC	3 cut(s)	51, 418, 421
BlsI	GCNGC	3 cut(s)	52, 419, 422
BmgT120I	GGNCC	1 cut(s)	112
BmiI	GGNNCC	1 cut(s)	113
BmsI	GCATC	2 cut(s)	58, 292
BmtI	GCTAGC	1 cut(s)	32
BsaI	GGTCTC	1 cut(s)	458
BsaJI	CCNNGG	2 cut(s)	205, 343
Bsc4I	CCNNNNNNNGG	1 cut(s)	110
BseDI	CCNNGG	2 cut(s)	205, 343
BseGI	GGATG	2 cut(s)	85, 385
BseLI	CCNNNNNNNGG	1 cut(s)	110
BseSI	GKGCMC	1 cut(s)	330
BseXI	GCAGC	3 cut(s)	37, 404, 407
BsgI	GTGCAG	1 cut(s)	406
BshFI	GGCC	1 cut(s)	114
BsiHKAI	GWGCWC	1 cut(s)	330
BslFI	GGGAC	1 cut(s)	361
BslI	CCNNNNNNNGG	1 cut(s)	110
BsmAI	GTCTC	1 cut(s)	458
BsmFI	GGGAC	1 cut(s)	361
BsmI	GAATGC	1 cut(s)	133
BsnI	GGCC	1 cut(s)	114
Bso31I	GGTCTC	1 cut(s)	458
Bsp1286I	GDGCHC	1 cut(s)	330
Bsp143I	GATC	1 cut(s)	243
BspANI	GGCC	1 cut(s)	114
BspLI	GGNNCC	1 cut(s)	113
BspOI	GCTAGC	1 cut(s)	32
BspTNI	GGTCTC	1 cut(s)	458
BssECI	CCNNGG	2 cut(s)	205, 343
BssMI	GATC	1 cut(s)	243
BssT1I	CCWWGG	2 cut(s)	205, 343
Bst4CI	ACNGT	2 cut(s)	367, 405
Bst6I	CTCTTC	2 cut(s)	339, 485
BstAPI	GCANNNNNTGC	1 cut(s)	139
BstC8I	GCNNGC	2 cut(s)	30, 296
BstF5I	GGATG	2 cut(s)	85, 385
BstKTI	GATC	1 cut(s)	246
BstMAI	GTCTC	1 cut(s)	458
BstMBI	GATC	1 cut(s)	243
BstMWI	GCNNNNNNNGC	1 cut(s)	139
BstNSI	RCATGY	1 cut(s)	298
BstSLI	GKGCMC	1 cut(s)	330
BstV1I	GCAGC	3 cut(s)	37, 404, 407
BsuRI	GGCC	1 cut(s)	114
BtgZI	GCGATG	1 cut(s)	31
BtsCI	GGATG	2 cut(s)	85, 385
BtsIMutI	CAGTG	2 cut(s)	269, 423
Cac8I	GCNNGC	2 cut(s)	30, 296
CaiI	CAGNNNCTG	1 cut(s)	305
Cfr13I	GGNCC	1 cut(s)	112
Csp6I	GTAC	2 cut(s)	202, 285
CviAII	CATG	4 cut(s)	250, 295, 319, 376
CviJI	RGCY	3 cut(s)	32, 114, 169
CviKI_1	RGCY	3 cut(s)	32, 114, 169
CviQI	GTAC	2 cut(s)	202, 285
DpnI	GATC	1 cut(s)	245
DpnII	GATC	1 cut(s)	243
DraI	TTTAAA	1 cut(s)	240
Eam1104I	CTCTTC	2 cut(s)	339, 485
EarI	CTCTTC	2 cut(s)	339, 485
Eco130I	CCWWGG	2 cut(s)	205, 343
Eco31I	GGTCTC	1 cut(s)	458
Eco57I	CTGAAG	2 cut(s)	245, 453
EcoRI	GAATTC	1 cut(s)	254
EcoT14I	CCWWGG	2 cut(s)	205, 343
ErhI	CCWWGG	2 cut(s)	205, 343
FaeI	CATG	4 cut(s)	253, 298, 322, 379
FaqI	GGGAC	1 cut(s)	361
FatI	CATG	4 cut(s)	249, 294, 318, 375
Fnu4HI	GCNGC	3 cut(s)	51, 418, 421
FokI	GGATG	2 cut(s)	92, 392
Fsp4HI	GCNGC	3 cut(s)	51, 418, 421
FspBI	CTAG	4 cut(s)	29, 33, 54, 143
GluI	GCNGC	3 cut(s)	51, 418, 421
HaeIII	GGCC	1 cut(s)	114
Hin1II	CATG	4 cut(s)	253, 298, 322, 379
HincII	GTYRAC	1 cut(s)	370
HindII	GTYRAC	1 cut(s)	370
HindIII	AAGCTT	1 cut(s)	167
HinfI	GANTC	1 cut(s)	428
HphI	GGTGA	1 cut(s)	161
Hpy166II	GTNNAC	2 cut(s)	328, 370
Hpy188I	TCNGA	1 cut(s)	433
Hpy188III	TCNNGA	1 cut(s)	230
Hpy8I	GTNNAC	2 cut(s)	328, 370
HpyAV	CCTTC	2 cut(s)	140, 269
HpyCH4III	ACNGT	2 cut(s)	367, 405
HpyCH4V	TGCA	2 cut(s)	328, 423
HpyF10VI	GCNNNNNNNGC	1 cut(s)	139
Hsp92II	CATG	4 cut(s)	253, 298, 322, 379
Kzo9I	GATC	1 cut(s)	243
LmnI	GCTCC	1 cut(s)	76
LpnPI	CCDG	1 cut(s)	312
Lsp1109I	GCAGC	3 cut(s)	37, 404, 407
LweI	GCATC	2 cut(s)	58, 292
MaeI	CTAG	4 cut(s)	29, 33, 54, 143
MalI	GATC	1 cut(s)	245
MboI	GATC	1 cut(s)	243
MboII	GAAGA	1 cut(s)	326
MhlI	GDGCHC	1 cut(s)	330
MluCI	AATT	3 cut(s)	12, 254, 474
MnlI	CCTC	2 cut(s)	123, 288
MroXI	GAANNNNTTC	1 cut(s)	258
MseI	TTAA	2 cut(s)	239, 360
MslI	CAYNNNNRTG	2 cut(s)	323, 378
Mva1269I	GAATGC	1 cut(s)	133
MwoI	GCNNNNNNNGC	1 cut(s)	139
NdeII	GATC	1 cut(s)	243
NheI	GCTAGC	1 cut(s)	28
NlaIII	CATG	4 cut(s)	253, 298, 322, 379
NlaIV	GGNNCC	1 cut(s)	113
NspI	RCATGY	1 cut(s)	298
PaeI	GCATGC	1 cut(s)	298
PctI	GAATGC	1 cut(s)	133
PdmI	GAANNNNTTC	1 cut(s)	258
PfeI	GAWTC	1 cut(s)	428
PkrI	GCNGC	3 cut(s)	52, 419, 422
PspN4I	GGNNCC	1 cut(s)	113
PspPI	GGNCC	1 cut(s)	112
PstNI	CAGNNNCTG	1 cut(s)	305
RsaI	GTAC	2 cut(s)	203, 286
RsaNI	GTAC	2 cut(s)	202, 285
RseI	CAYNNNNRTG	2 cut(s)	323, 378
SaqAI	TTAA	2 cut(s)	239, 360
SatI	GCNGC	3 cut(s)	51, 418, 421
Sau3AI	GATC	1 cut(s)	243
Sau96I	GGNCC	1 cut(s)	112
SduI	GDGCHC	1 cut(s)	330
SetI	ASST	7 cut(s)	34, 106, 151, 171, 184, 401, 470
SfaNI	GCATC	2 cut(s)	58, 292
SmiMI	CAYNNNNRTG	2 cut(s)	323, 378
SphI	GCATGC	1 cut(s)	298
Sse9I	AATT	3 cut(s)	12, 254, 474
SspMI	CTAG	4 cut(s)	29, 33, 54, 143
StyI	CCWWGG	2 cut(s)	205, 343
TaaI	ACNGT	2 cut(s)	367, 405
TasI	AATT	3 cut(s)	12, 254, 474
TatI	WGTACW	1 cut(s)	284
TfiI	GAWTC	1 cut(s)	428
Tru1I	TTAA	2 cut(s)	239, 360
Tru9I	TTAA	2 cut(s)	239, 360
TscAI	CASTG	2 cut(s)	269, 430
TseI	GCWGC	3 cut(s)	50, 417, 420
TspDTI	ATGAA	3 cut(s)	34, 96, 326
TspRI	CASTG	2 cut(s)	269, 430
VneI	GTGCAC	1 cut(s)	326
XapI	RAATTY	2 cut(s)	12, 254
XceI	RCATGY	1 cut(s)	298
XmnI	GAANNNNTTC	1 cut(s)	258
XspI	CTAG	4 cut(s)	29, 33, 54, 143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.